BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58122.1
Length=2057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475423 jgi|Araly1|475423|fgenesh2_kg.2__553__AT1G58122.1 3210 0.0
> Ahg475423 jgi|Araly1|475423|fgenesh2_kg.2__553__AT1G58122.1
Length=2044
Score = 3210 bits (1738), Expect = 0.0
Identities = 1969/2073 (95%), Gaps = 45/2073 (2%)
Strand=Plus/Plus
Query 1 ATTGCGAGaaacaaagaaaacttaagcctcaagaaatcaaacccac-aaaaaatc-aatt 58
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 1 ATTGCGAGAAACAAAGAAAGCTTAACCCTCAAGAAATCAAACCCACAAAAAAATCAAATT 60
Query 59 caacaaaacCTCTTTCTGctc-tctctctctTTTTCATTCCCATATGTTGCTTCCTTGAG 117
||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 61 CAATAAAACCTCTTTCTGCTCTTC-CTCTCTTTTTCATTCCCATATGTTGCTTCCTTGAA 119
Query 118 TTTATCTC-T-TC--CC-AAAGAATGGGAAGCAACATCTGAGGATCCATTTGATTACCAT 172
|| ||||| | || || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 TTCATCTCTTCTCTTCCGAAAGAATGGGGAGCAACATCTGAGGATCCATTTGATTACCAT 179
Query 173 AC---A--TATATTAAAAACAAAAACATATATCTTTGTGTGTGCGCGTTAATGATGAAAT 227
|| | |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 ACATAACTTATATTCAAAACAAAAAC--ATATCTTTGTGTGTGCGCGTTAATGATGAAAT 237
Query 228 AGCAGATTGAGAGCAAGAAAGAGGTCATAGCTGATAACCACAATGGAGATTCAGAGGATG 287
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 238 AGCAGATTGAGAGCAAGAAAGAGGTAATAGCTGATAACCGCAATGGAGATTCAGAGGATG 297
Query 288 AGGCAGTTGATGTCTCTTTGGTCTAATTTGAAGAGTAGCCGCGTTTCTCTCACCGGTGGG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGGCAGTTGATGTCTCTTTGGTCTAATTTGAAGAGTAGCCGCGTTTCTCTCACCGGTGGG 357
Query 348 AATCATACAGCCGCAAGGTTCTGCACTCGCTAGGCTCGCctcttctctcgctagc-tttt 406
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 358 AATCATACAGCCGCAAGGTTCTGCACTCGCTAGGCTCGCCTCTTCTCTCGCTCGCTTTTT 417
Query 407 tctttcttctttctcttcttcttacttccttttgattctcttttagctctctattctctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 418 TCTTTCTTCTTTCTCTTCTTCTTACTTCCTTTTGATTCTCTTTTAGCTCTCTATTCTATT 477
Query 467 ctcttctcttctctttttcctatttctttaactttcAACTGTACATTTTCGCGCGCGCTC 526
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 478 CTCTTCTCTTCTCTCTTTCCT-TTTCTTTAACTTTCAACTGTACATTTTCGCGCGCTCTC 536
Query 527 TTTGTCTCAGCTTTTAAGACATAACAAAACAAGATATGGTGTTTGTTACTGTCCAAGACT 586
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 537 TTTGTCTCAGCTTTTAAGACATAAC-AAA-AAGATATGGTGTTTGTTACTGTCCAAGACT 594
Query 587 TTCACTCCATGTGCCAAAAGCATTGTCACTACCTCTTGAAAAAGAGAGACCGCTCGAGCT 646
|||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 595 TTCACTCCATGTGCCAAAAGCATTTTCACTACCTCTTGAAAAAGAGAGACTGCCCGAGCT 654
Query 647 CCTCTACAAGCTCTGCGGATACTTTCCTCAAGGCTTCTCGCTCTGAAGTCTTGAGTCTCT 706
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CCTCTATAAGCTCTGCGGATACTTTCCTCAAGGCTTCTCGCTCTGAAGTCTTGAGTCTCT 714
Query 707 TTATGAGATCAACGCTTTTGGCTTTGTTGTTTCTGTCATTTACTTGGTTAAGTCTCCTGA 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 TTATGAGATCAACGCTTTTGGCTTTGTTGTTTCTGTCATTTACTTGGTTAAGTCTCCTCA 774
Query 767 AATATGGAACTACTGCAACCGCTCCATCTAAGTCGGTTGAATCTGACCTTCCTGAATTAC 826
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AATATGGAACTTCTGCAACCGCTCCATCTAAGTCGGTTGAATCTGACCTTCCTGAATTAC 834
Query 827 TACCTTTGCTCCTCAACGATTTGGAGAAGCAAGGTCTCTTTAAGATGGGTGATAAAGCAC 886
| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 835 TGCCTTTGCTTCTCAACGATTTGGAGAAGGAAGGTCTCTTTAAGATGGGAGATAAAGCAC 894
Query 887 TCTTCCTAAGTGGAGGAGATGATGAGGTCACTGTTTCTTCATACTCTCAAACAGTGATCG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TCTTCCTAAGTGGAGGAGATGATGAGGTCACTGTTTCTTCATACTCTCAAACAGTGATCG 954
Query 947 AAACTGATATGCTTCTTGTATCTGCAAGCGATCAGGAGATGCAGAGCATGGTACCAGATG 1006
||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 955 AAACTGATATGGTTCTTGTATCTGCAAGCAATCAGGAGATGCAGAGCATGGTCCCAGATG 1014
Query 1007 AGACCTTTGATTTCGCCTTTGCGCATTCTCGCCACATTGACTCTGCTGAATTTATAGACA 1066
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1015 AGACCTTTGATTTCGCCTTTGCGCATTCTCGTCACATTGACTCTGCTGAATTTATAGACA 1074
Query 1067 GGACTCTTAAAGTTGGCGGCATCTTCACCGTCCAGCTCAACCTTCAAGATCTTCCTCCAA 1126
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1075 GGACTCTTAAAGTTGGCGGCATCTTTACCGTCCAACTCAACCTTCAAGATCTTCCTCCAA 1134
Query 1127 ATTTCTTGAAACATCCAAACTACGAGATAGTTTACGTAAAGAGCTCTGAGTATACGGTAA 1186
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1135 ATTTCTTGAAACATCCAAACTACGAAATAGTCTACGTAAAGAGCTCTGAGTACACGGTAA 1194
Query 1187 TGACGATGAGGAAAACAGGGGAAACAGAGCAAAAACAGAGCTTAGTCGCCACCGGGAGAA 1246
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1195 TGACGATGAGGAAAACAGGGGAAACAGAGCATAAACAGAGCTTAGTCGCCCCCGGGAGAA 1254
Query 1247 AGCTTCTCGGTATCACAGAAGAAGATGCCAGGGAAAAAGCTTTGAGAAAGCTAGAGGATG 1306
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1255 AGCTTCTCGGTATCACAGAAGAAGAGGCCAGGGAAAAAGCTTTGAGAAAGCTAGAGGATG 1314
Query 1307 TTCTCCTTGAACCACCAAGAGCAGCTTCAAGGAAATCAAGAACATACTTCAAACGGACTC 1366
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1315 TTCTCCTTGAACCACCAAGAGCAGCTTCAAGGAAATCAAGAACTTACTTCAAACGGACAC 1374
Query 1367 GGTACCTCCCAGACCTTATGGGAGACAACTTGGACCTGGAGAGCTACTCGAGGCGGGTAT 1426
|||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1375 GGTACCTCCCGGACCTTATGGGAGACAATTTGGACCTCGAGAGCTACTCAAGGCGGGTAT 1434
Query 1427 TCATCGATGTGGGAAACGGAAAAGGAAGCAGCGGAATGGAATGGTTTGTTGAAAATTACC 1486
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTATCGATGTGGGAAACGGAAAAGGAAGCAGCGGAATGGAATGGTTTGTTGAAAATTACC 1494
Query 1487 CAACAAGGAATCAGAAGTTTGAGATGTACAAGATTGAGACGGTGAACGATGAGATGAGCC 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CAACAAGGAATCAGAAGTTTGAGATGTACAAGATTGAGACGGTGAACGATGAGATGAGCC 1554
Query 1547 TAGAATCTGAGAAAATGGGAATGACGGAGTGGCTGAAAGAGAATGTCAAGGAAGAGGAAT 1606
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1555 TAGAATCTGAGAAAATGGGCATGACGGAGTGGCTGAAAGAGAATGTCAAGGAGGAGGAAT 1614
Query 1607 ACGTGGTGATGAAGGCCGAGGCGGAAATGGTGGAGGAGATGATGAGGAGCAAGTCGATAA 1666
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1615 ACGTGGTGATGAAGGCGGAGGCGGAAGTGGTGGAGGAGATGATGAGGAGCAAGTCGATAA 1674
Query 1667 AAATGGTGGATGAGCTTTTCTTGGAGTGCAAGCCAAAGGGTTTAGGGCTAAGGGGAAGAA 1726
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1675 AAATGGTGGATGAGCTTTTCTTGGAGTGCAAGCCAAAGGGTTTAGGGCTAAGAGGAAGGA 1734
Query 1727 AGATGCAGAGTAAAAGTGGTAGGGCTTATTGGGAGTGTTTGGCTCTTTATGGCAAACTAA 1786
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AGATGCAGAGTAAGAGTGGTAGGGCTTATTGGGAGTGTTTGGCTCTTTATGGCAAACTAA 1794
Query 1787 GAGATGAAGGTGTTGCTGTGCATCAATGGTGGGGTTGAAGTTAAAGAACATGGAGACAGA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 GAGATGAAGGTGTTGCTGTGCATCAATGGTGGGGTTGAAGTTAAAGAACATGGAGACAGA 1854
Query 1847 ACTGAGAGAGAATATCCATCAAACCAGTCTCtttttattatattttctgtttgttttttt 1906
||||||| ||||||| ||||||| ||||||||||||||| |||||| || || |||||
Sbjct 1855 ACTGAGA-AGAATATTCATCAAATCAGTCTCTTTTTATTCTATTTTATGATT-TTTTT-- 1910
Query 1907 tccctctgttgtttctttttgtgaaaggcctctttttgtttttgtgtgttaatttgtaat 1966
||||||||||| || | | ||||||||||||||||||||||||||||
Sbjct 1911 -CCCTCTGTTGT--CT------------C-T-TTTTTGTTTTTGTGTGTTAATTTGTAAT 1953
Query 1967 cat-aagtttgttgttgtgttttaagtattttgtggtgtttaagtttgGGATCTGATGAG 2025
||| || | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1954 CATCAA-TATGTTGTTGTGTTTTATGTATTTTGTGGTGTTTAAGTTTGGGATCTGATGAG 2012
Query 2026 CTTAATTAAA-AGTGTTTCGTGTTTCCTTGTTG 2057
|||||||| | | | |||||||||| |||||||
Sbjct 2013 CTTAATTACATA-TCTTTCGTGTTTTCTTGTTG 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77361287595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5