BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58170.1
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475425 jgi|Araly1|475425|fgenesh2_kg.2__555__AT1G58170.1 867 0.0
> Ahg475425 jgi|Araly1|475425|fgenesh2_kg.2__555__AT1G58170.1
Length=631
Score = 867 bits (469), Expect = 0.0
Identities = 586/641 (91%), Gaps = 14/641 (2%)
Strand=Plus/Plus
Query 45 CTCTCCAGTCTCCACTATGGGCAGTTTTCTCTCCTTCTTTCTTATTTCTTCTCGAACACT 104
|||| |||||||||| |||| ||||||||||||||| ||| || ||||||||| ||||||
Sbjct 1 CTCTTCAGTCTCCACCATGGCCAGTTTTCTCTCCTTGTTTATTGTTTCTTCTCTAACACT 60
Query 105 AGCCCTCGTCCTAATTTCCGTCACAGGAGAAACCCTTGAATCTAATTTCTTGCATCACAA 164
||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 61 AGCCCTCGTCCTAATTTCCGTCACA-G-G--A-----GAATCTAATTTCTTGCATCACAA 111
Query 165 GAAAGAGAAACTAACTCATTTCAGAGTATACTGGCACGATATTGTAACCGGCCAAGATTC 224
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 112 GAAAGAGAAACTAACTCATTTCAGAGTTTACTGGCACGATATCGTAACCGGCCAAGATCC 171
Query 225 GTCTTCGGTGTCAATCATGAATCCTCCGAAAAAATACACGGGGGCAACGGGCTTT-GGTC 283
||||| ||| |||||||||||||||||||||| ||||||||| ||||||| ||| ||||
Sbjct 172 ATCTTCAGTGACAATCATGAATCCTCCGAAAAACTACACGGGGCCAACGGG-TTTCGGTC 230
Query 284 TCATGCGTATGATTGATAACCCTTTAACGCTCACACCAAAATTAAGCTCCAAAATGGTGG 343
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 231 GCATGCGTATGATTGATAACCCTTTAACGCTCACCCCAATATTAAGCTCCAAAATGGTGG 290
Query 344 GAAGGGCACAAGGGTTTTATGCAGGCACATCTAAAGAAGAAATAGGATTATTGATGGCTA 403
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 291 GAAGGGCACAAGGGTTTTATGCAGTCACATCTAAAGAAGAGATAGGATTATTGATGGCTA 350
Query 404 TGAATTTTGCGATTCTTGATGGGAAATACAATGGAAGCACGATCACAGTGTTAGGAAGAA 463
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 351 TGAATTTTGCGATTCTTGATGGGAAATACAATGGAAGCACGATTACAGTTTTCGGAAGAA 410
Query 464 ATTCAGTGTTTGATAAGGTGAGGGAGATGCCAGTGATTGGAGGAAGTGGACTTTTCCGAT 523
| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 411 ACTCGGTGTTTGATAAGGTGAGGGAGATGCCAGTGATCGGAGGGAGTGGACTTTTCCGAT 470
Query 524 TTGCTAGGGGTTATGTTCAAGCTAGCACACATGAGTTTAATCTCAAGACAGGGAACGCCA 583
||||||| |||| |||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 471 TTGCTAGAGGTTTTGTTGAAGCAAGAACACATGAGTTTAATCTTAAGACAGGGAACGCCA 530
Query 584 TCGTTGAGTATAATTGTTATCTTTTGCACTACTAATTTGTCATTTCTAGTTTATTA-T-T 641
|||| ||||||||||||||| |||||||||| | ||||||||||||| |||||||| | |
Sbjct 531 TCGTCGAGTATAATTGTTATGTTTTGCACTATTGATTTGTCATTTCTTGTTTATTAGTAT 590
Query 642 -ATTTATTGTAAGGTTTTTCTTCTTCACATAGTGGTGGTGG 681
|||||||||| |||||||| ||| ||||||||||||||||
Sbjct 591 TATTTATTGTATGGTTTTTCATCTCCACATAGTGGTGGTGG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26076075228
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5