BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58180.2
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475428 jgi|Araly1|475428|fgenesh2_kg.2__558__AT1G58180.2 1502 0.0
> Ahg475428 jgi|Araly1|475428|fgenesh2_kg.2__558__AT1G58180.2
Length=1089
Score = 1502 bits (813), Expect = 0.0
Identities = 908/954 (95%), Gaps = 6/954 (1%)
Strand=Plus/Plus
Query 199 CAAAAATGGCGTTTACACTAGGTGGAAGAGCTCGTCGTCTAGTCTCTGCAACATCAGTTC 258
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 139 CAAAAATGGCGTTTACACTAGGTCGAAGAGCTCGTCGTCTAGTCTCTGCAACATCGGTTC 198
Query 259 ATCAAAATGGTTGCTTACACAAACTGCAACAAATTGGATCGGATCGGTTTCAGCTTGGTG 318
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 199 ATCAAAATGGTTGTTTACACAAACTGCAACAAACGGGATCGGATCGGTTTCAGCTTGGTG 258
Query 319 AAGCAAAAGCAATAAGATTACTACCCAGGAGAACAAACATGGTTCAAGAATTAGGAATCA 378
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 259 AAGCAAAAGCAATAAGATTATTACCCAGGAGGACGAACATGGTTCAAGAATTAGGAAT-T 317
Query 379 GG-GAAGAATTTATGGATCTAAACAGAGAAACAGAGACAAGTTATGATTTTC-TGGATGA 436
|| |||||||||||||| ||||||||||||||| | |||||||||||||| ||| |||
Sbjct 318 GGAGAAGAATTTATGGAGAGAAACAGAGAAACAGACAGAAGTTATGATTTTCTTGG-TGA 376
Query 437 AATGAGACACAGATTTCTGAAATTCAAGAGACAAAAGTATCTACCGGAGATAGAAAAGTT 496
|||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 377 GATGAGACAGAGATTTATGAGATTCAAGAGACAAAAGTATCTACCCGAGATAGAAAAGTT 436
Query 497 TAAAGCTTTGGCCATAGCTCAATCACCAAAGGTAATGGTGATAGGATGTGCAGATTCAAG 556
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 437 TCAAGCTTTGGCCATAGCTCAATCACCAAAGGTTATGGTGATAGGATGTGCAGATTCAAG 496
Query 557 GGTATGTCCATCTTATGTACTAGGATTTCAACCTGGTGAAGCTTTTACTATCCGAAATGT 616
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 497 GGTGTGTCCATCTTATGTACTAGGATTTCAACCTGGTGAAGCTTTTACTATACGAAATGT 556
Query 617 CGCCAATCTCGTTACCCCGGTTCAGAATGGACCAACAGAAACCAACTCGGCTCTTGAGTT 676
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 557 CGCTAATCTCGTTACCCCGGTCCAGAATGGACCAACAGAAACCAACTCGGCTCTTGAGTT 616
Query 677 TGCGGTCACCACTCTTCAGGTTGAGAACATTATAGTTATGGGTCATAGCAATTGTGGAGG 736
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 617 TGCGGTCACCACTCTTCAGGTTGAGAACATTATAGTAATGGGTCACAGCAATTGTGGAGG 676
Query 737 AATTGCAGCACTTATGAGTCATCAAAACCACCAAGGGCAACACTCTAGTTTAGTAGAAAG 796
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 677 AATTGCAGCACTTATGAGTCATCAAAACCACCAAGGGCAACACTCAAGTTTAGTAGAGAG 736
Query 797 GTGGGTTATGAATGGGAAAGCCGCTAAGTTAAGAACACAATTAGCTTCATCACATTTATC 856
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 737 ATGGGTTATGAATGGGAAAGCCGCTAAGTTAAGAACACAATTAGCTTCGTCACATTTATC 796
Query 857 CTTTGATGAACAATGCAGAAACTGTGAGAAGGAATCTATAAAGGATTCTGTGATGAATTT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 CTTTGATGAACAATGCAGAAACTGTGAGAAGGAATCTATAAAGGATTCTGTGATGAATTT 856
Query 917 GATAACTTATTCATGGATAAGAGATAGAGTAAAGAGAGGTGAAGTCAAGATTCATGGATG 976
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 857 GATAAGTTATTCATGGATAAGAGATAGAGTAAAGACAGGTGAAGTCAAGATTCATGGATG 916
Query 977 TTATTACAATTTGTCAGATTGTAGTCTTGAGAAGTGGAGATTAAGTTCAGACAAG-ACTA 1035
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 917 TTATTACAATTTGTCAGATTGTAGTCTTGAGAAGTGGAGACTAAGTTCAGACAAGGA-TA 975
Query 1036 ACTATGGATTCTATATTTCAGACAGAGAGATATGGAGTTGAGTAAATATTGAACAATCCT 1095
|| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 976 ACAATGGATTCCATATTTCAGACAGAGAAATATGGAGTTGAGTAAATATAGAACAATCTT 1035
Query 1096 CAGTTCTAATATTCAGATGTATCTTTGTACATACGAAATGATATTTACACAATT 1149
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1036 CAGTTCTAATATTCAGATGTATCTTTGTACATATGAAATGATATTTACACAATT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5