BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58200.1
Length=2517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475431 jgi|Araly1|475431|fgenesh2_kg.2__561__AT1G58200.2 3500 0.0
> Ahg475431 jgi|Araly1|475431|fgenesh2_kg.2__561__AT1G58200.2
Length=2492
Score = 3500 bits (1895), Expect = 0.0
Identities = 2274/2447 (93%), Gaps = 65/2447 (3%)
Strand=Plus/Plus
Query 95 ttg-AACAAAGAAAGAAACTAAT---C-A-AA-AAGACGAAG-AG--GAAGAAGAAGCTC 144
||| ||||||||||||||||||| | | || |||| |||| || |||||||||||||
Sbjct 84 TTGTAACAAAGAAAGAAACTAATCAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTC 143
Query 145 ACCGTTTCTATCTCTC-ATTTTAACCACTGATCTTCTCCGATTGCGT-CTTGCTTCTCGT 202
|||||||| |||| | ||| || ||||||||||||||||||||| | ||||||||| |
Sbjct 144 ACCGTTTC--TCTC-CGATTCTATCCACTGATCTTCTCCGATTGC-TACTTGCTTCTTTT 199
Query 203 CGTTTGCTTCCGATCTCTCTCTGGATTTTCTCAATTTCGTAC-G-G-A-GTTAATTGTGT 258
|||||||||||||||||||| || |||||||||| ||||| | | | ||||||| |||
Sbjct 200 TGTTTGCTTCCGATCTCTCTC--GA-TTTCTCAATTCCGTACGGAGTAGGTTAATTTTGT 256
Query 259 ATAAAGGAGTTTAGTTGATCATTGTTTTGTACATTTGGGATGATGATGCGTACTGT-TGC 317
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 257 ATAAAGGAGATTAGTTTATCATTGTTTTGTACATTTGGGATGATGATGCGTACTGTCT-C 315
Query 318 TTTACCATTGTCCCATGATCTGAATGTTCATAAGATCCATGAAGCTTCTGGATTCCATAA 377
||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 316 TTTGCCATTGTCTCATGATCTCAATGTTCATAAGATCCATGAAGCTTCTGGATACCATAA 375
Query 378 TAGTGCTGCTGGTAAAAATCGTGTGTATCTGACTCGGACTGGTCTTTCATCATGTGCCAC 437
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 376 TAGTGCAGCTGCTAAAAATCGTGTGTATCTGACTCGGACTGGTCTTTCATCATGTGCTAC 435
Query 438 GAGACAAGACGTTTGGAGTCTTCAGCTACTAGAGAGCTTGAGTGGTTCAATAGTACCTGT 497
||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 436 GAGACAAGACGTTTGGAGTCTTCAGCTTCTAGAGAGCTTTAGTGGTTCAAAAGTACCTGT 495
Query 498 ATCATCTAGGTGTAATGCATTTGTTTGCCGGTCAGCTCTCTCTCCTGGGAATGGAAATGA 557
||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 496 ATCATCTAGGTGTAATGCATTCGTTTGCCGGTCAGCTCTCTTTCCCGGGAATGGAAATGA 555
Query 558 AGGCCCTATTCTTAAATCAACTGCAGTAATATTCACAAGGGTATATGATGCTTTAGGTGG 617
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 556 AGGCCCTATTCTTAAATCAACTGCAGTAATATTCACAAGGGCATATGATGCTTTACGCGG 615
Query 618 AAATCCTCATTTAGTGAAACTAATTCCAGCGGTTGGGATTCTTGCATTTGCTACATGGGG 677
||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 616 AAA---TCATTTAATGAAACTAATTCCAGCAGTTGGGATTCTTGCATTTGCTACATGGGG 672
Query 678 TCTTAGACCCCTTCTGCGCCTTGCCAGAACTACCCTGTTTGAGAAGGGGAATGATGCAAA 737
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 673 TCTTAGACCCCTTCTGCGCCTTGCCAGAGCTACCCTGTTTGAGAAGGGGAATGATGCAAA 732
Query 738 TTCACAGAAGAGTAGCACGCAGTACATTGTTGTGTCATATCTTCAACCTTTGCTGCTTTG 797
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 733 TTCACAGAAGAGTAGCACACAATACATTGTTGTGTCATATCTTCAGCCTTTGCTGCTTTG 792
Query 798 GAGCGGAGCAATCCTTTTATGCAGAACATTGGACCCAATAGTATTGCCTTCAAGTGCCGG 857
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 793 GAGCGGAGCTATCCTTCTATGCAGAACATTGGACCCAATAGTATTGCCTTCAAGTGCCAG 852
Query 858 CCAGGCTATTAAACAGCGTCTTCTGATCTTTGCTCGGTCCATATCAACGGTGTTGGCATT 917
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 853 CCAGGCTGTTAAACAGCGTCTTCTGACCTTTGCTCGGTCCATGTCAACGGTGTTGGCATT 912
Query 918 TTCCTGCTGTTTATCAAGCCTACTTCAGCAGGTGCAGAAATTTTTTATGGAGACAAATAA 977
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TGCTTGCTGTTTATCAAGCCTACTTCAGCAGGTGCAGAAATTTTTTATGGAGACAAATAA 972
Query 978 TCCTGCTGATACCAGAAATATGGGTTTCAGTTTTGCTGGAAAAGCTGTTTACACTGCTGC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TCCTGCTGATACCAGAAATATGGGTTTCAGTTTTGCTGGAAAAGCTGTTTACACTGCTGC 1032
Query 1038 GTGGGTTGCTGCTGCTTCATTGTTTATGGAACTGTTAGGCTTCTCTACCCAAAAATGGCT 1097
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1033 GTGGGTTGCTGCTGCTTCATTGTTTATGGAGCTGTTGGGCTTCTCTACCCAAAAGTGGCT 1092
Query 1098 AACGGCTGGGGGTCTGGGGACAGTACTGCTAACTCTTGCTGGCCGTGAGATACTTACTAA 1157
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1093 AACGGCTGGGGGTCTGGGGACAGTACTGCTAACTCTTGCTGGTCGTGAGATACTTACAAA 1152
Query 1158 CTTTCTTTCAAGCATTATGATTCATGCTACACGGCCCTTTGTTCTGAATGAGTGGATCCA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CTTTCTTTCAAGCATTATGATTCATGCTACACGGCCCTTTGTTCTGAATGAGTGGATCCA 1212
Query 1218 GACCAAGATAGGAGGCTATGAAGTTTCTGGCACAGTAGAGCAAGTCGGTTGGTGGTCACC 1277
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1213 GACCAAGATAGGAGGCTATGAAGTTTCTGGCACAGTAGAGCGTGTCGGTTGGTGGTCACC 1272
Query 1278 TACAATTATCAGAGGTGATGACCGGGAAGCAGTTCATATTCCTAACCACCAGTTCAGTGT 1337
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1273 TACAATTATCAGAGGTGATGACCGTGAAGCAGTTCATATTCCTAACCACCAGTTTAGTGT 1332
Query 1338 GAATATTGTGAGAAATCTCACTCAGAAGACGCATTGGCGCATCAAAACACATCTTGCCAT 1397
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAATATTGTGAGAAATCTAACTCAGAAGACGCATTGGCGCATCAAAACACATCTTGCCAT 1392
Query 1398 CAGTCATCTTGATGTCAGCAAAATTAATAATATCGTGGCTGATATGCGCAAGGTGTTGTC 1457
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1393 CAGTCATCTTGATGTCAGCAAAATTAATAATATCGTAGCTGATATGCGCAAGGTGTTGTC 1452
Query 1458 TAAAAATCCTCAAATCGAGCAGCAAAAAATACACAGAAGAGTCTTTCTGGAGGATATAGA 1517
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1453 TAAAAATCCTCAAATCGAGCAGCAAAAAATACACAGAAGAGTCTTTTTGGAAGATATAGA 1512
Query 1518 TCCAGAGAACCAAGCCCTTAGGATTCTAATATCCTGTTTTGTCAAGACTTCACGTTTTGA 1577
||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1513 TCCAGAGAACCAAGCACTGAGGATCCTAATATCATGTTTTGTAAAGACTTCACGTTTTGA 1572
Query 1578 AGAATACCTGTGCGTTAAGGAAGCAGTGCTCTTGGATCTTCTTACTGTTATTAGGCATCA 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 AGAATACCTGTGCGTTAAGGAAGCAGTGCTCTTGGATCTTCTTACTGTTATTAGGCATCA 1632
Query 1638 CGGGGCACGTCTAGCAACTCCCATTAGAACAGTACAGAGGATGCGTAATGAGGCTGAGGT 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 CGGGGCACGTCTAGCAACTCCCATTAGAACAGTACAGAGGATGCGTAATGAGGCTGAGGT 1692
Query 1698 GGACACTGCAGGATTTTCAGACATCGTTTTCAATCAAGCAGCAATGAACCGCCGATACAT 1757
||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| |||
Sbjct 1693 GGACAGTGCAGGATTTTCAGACATCATTTTCAATCAAGCAGCGATGAACCGTCGATTCAT 1752
Query 1758 GCTGATTGAGCCATCTTATAAAATCAACAGCGATGACAATTCAAAGTCTCCCTCACCCAG 1817
|||||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1753 GCTGATTGAGCCTTCCTATAAAATAAACAGCGATGATAACTCAAAGTCTCCCTCACCCAG 1812
Query 1818 CCCAGGGCAAAAGTCACCCAGCCCAGGGCAAAAGAGTGAAGAAAGGGACCTTCAAGAAGA 1877
||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1813 CCCAGGGCAAAAG--A----G---------------TGAAGAAAGGGACCTTCAAGAAGA 1851
Query 1878 ACCATCGGAAACCAAGGCCGAAACAGAAAACAACGGATC-G-GT--GC-CGG-TTTCAAA 1931
||||||||||||||||||||||||||||||||||||||| | || | | | |||||||
Sbjct 1852 ACCATCGGAAACCAAGGCCGAAACAGAAAACAACGGATCAGCGTCAGTGCTGATTTCAAA 1911
Query 1932 TGCCAAAAAGGA-AAACCAGAAAGCGGCTCTTGGTTCCAACTCCAATACAGGCACTAAGG 1990
||||||||| || |||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1912 TGCCAAAAAAGAGAAAC-AGAAAACGGCTCTTGGTTCCAACTCCAGTACAGGCACTAAGG 1970
Query 1991 GTTCATCAACCTCAACATCTGACCAGCCAGTAGCACAAAAGTCAGAAGAAAAGAAGAAAG 2050
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 GTTCACCAACCTCAACATCCGACCAGCCAGTAGCACAAAAGTCAGAAGAAAAGAAGAAAG 2030
Query 2051 AGAGCGTGGGAGATCCACATAAAGCAGAGAAGGATGAAGTTTCTGATGACGAAGCTACAA 2110
|||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2031 AGAGCGTGGGAGATTCAAATAAAGCAGAGAAGGATGAAGTTTATGATGACGAAGGTACAA 2090
Query 2111 TAGAGCAGACACTGAAATCAAAAGCAAAACAAGGGAGCGAGAAAA-A-CAATGGAGAGTC 2168
|||||||||| ||||||||||||||| ||||| || | ||||| | || |||||| ||
Sbjct 2091 CAGAGCAGACATTGAAATCAAAAGCAAGACAAGTGA-CT-GAAAAGAGCAGTGGAGATTC 2148
Query 2169 GAAAGCTCGAGATGGTGGTGGGTCCGGTACTAGTTCTTTACTGGAGGAGAATCTTGTTCT 2228
|||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 2149 GAAAGCTCGAGATGGTGGTGGGTCTGGTACAAGTTCTTTTCTGGAGGAGAACCTTGTTCT 2208
Query 2229 TGGTGTTGCGTTGGATGGCTCAAAACGTACACTCCCGATTGATGAAGAACACAAAGCATC 2288
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2209 GGGTGTTGCATTGGATGGCTCAAAACGTACACTCCCGATTGATGAAGAAGTCAAAGCATC 2268
Query 2289 TGGTGCACTAATGGATTCAGAAGAACTTGGTATTGGATCAGAATGAGTAGACGGAGAAGA 2348
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2269 TGGTGCATTAATGGATTCTGAAGAACTTGGTATAGGATCAGAATGAGTAGACGGAGAAGA 2328
Query 2349 GATATAAAGAAATTTGTGTTCTAAGCAATTTAATGCTTCTGTAGAAAGTAACAAACAGAA 2408
| || ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2329 GGTACAAAAAAATTTGTGTTCCAAGCAATTTAATGCATCTGTAGAAAGTAACAAACAGAA 2388
Query 2409 ACGGAGAAATGAGCGCGACTCTCTGTTAATTTTGT-AAGCATAGAGGTTTGCGCCATTTC 2467
| |||||||||||||||||||| ||||||||| | || | |||||||||||||||||||
Sbjct 2389 ATGGAGAAATGAGCGCGACTCT--GTTAATTTTTTTAATCGTAGAGGTTTGCGCCATTTC 2446
Query 2468 ATCTCTGTAAATAATACTAGCGATTCAAAAACTGAAAAGTAGTTTGT 2514
|||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2447 ATCTCTGTAAATAA-ACTAGCGATTCAAAAACTAAAAAGTAGTTTGT 2492
Score = 99.0 bits (53), Expect = 2e-19
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1 ATTGGCGTATTTTAGATTGATACGTCAAAGCTCCTCCTCGCGCACGTTAGCTAAAGGAAT 60
||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||
Sbjct 21 ATTGGCGTATTTTAGATAGACACGTCAAAGCTCCTCCTCGCGCACGTTAGCTAACGTCAT 80
Query 61 GTCTTGTA 68
||||||||
Sbjct 81 GTCTTGTA 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94882800295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5