BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58210.1
Length=3741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475432 jgi|Araly1|475432|fgenesh2_kg.2__562__AT1G58210.1 4259 0.0
Ahg312011 jgi|Araly1|312011|fgenesh1_pm.C_scaffold_1000791 675 0.0
> Ahg475432 jgi|Araly1|475432|fgenesh2_kg.2__562__AT1G58210.1
Length=3864
Score = 4259 bits (2306), Expect = 0.0
Identities = 2717/2910 (93%), Gaps = 50/2910 (2%)
Strand=Plus/Plus
Query 875 CTTCCTCTGCTTCTTCTTCCTTGGTACAAG-AAAAAAGATGTTGCAGAGAGCAGCGAGCA 933
|||| ||| ||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 962 CTTCTTCTTCTTCTTCTTCCTTAGTAC-AGCAAAAAAGATGTTGCAGAGAGCAGCGAGCA 1020
Query 934 ATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAAC 993
|||| |||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 1021 ATGCGTATTCATGGTGGTGGGCAAGTCATATCCGTACAAAGCAATCCAAATGGCTCGAAC 1080
Query 994 ACAATCTTCAGGGTAGAATATACTCTTAAGATTATAGATGAAGATGGAGACACTTTTGCT 1053
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1081 ACAATCTTCAGGGTAGAATATACACTTAAGATCATAGATGAAGATGGAGACACTTTTGCT 1140
Query 1054 AAAAGAGCTGAGATGTATTACCGTAAAAGACCAGAGATTGTTAATTTCGTGGAGGAAGCT 1113
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1141 AAAAGAGCTGAGATGTATTACCGTAAAAGGCCGGAGATTGTTAATTTCGTGGAGGAAGCT 1200
Query 1114 TTTCGTTCATACCGCGCTTTAGCTGAACGTTATGATCATTTATCTAGAGAGCTTCAAAGC 1173
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTTCGGTCATACCGTGCCTTAGCTGAACGTTATGATCATTTATCTAGAGAGCTTCAAAGC 1260
Query 1174 GCAAACCGTACAATAGCCACAGCTTTCCCTGAACATGTTCAGTTTCCTTTAGAGGATGAT 1233
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1261 GCAAACCGCACAATCGCCACAGCTTTCCCTGAACATGTTCAGTTTCCTTTGGAGGATGAT 1320
Query 1234 AGTGATGAAAATGAAGATTACG-ACGGAAGGCCACGAAAACCGCCTAAGCATCTTCATCT 1292
|||||||||||||||||||| | | |||| || || |||||||||||||||||||||||
Sbjct 1321 AGTGATGAAAATGAAGATTATGAAGGGAA-TCCGCGTAAACCGCCTAAGCATCTTCATCT 1379
Query 1293 TATTCCCAAGGGGATCAACATACCTGAAGTTCCGGATATTCCTAAGAAGAAAGATTTCAG 1352
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 TATTCCCAAGGGAATCAACATACCTGAAGTTCCGGATATTCCAAAGAAGAAAGATTTCAG 1439
Query 1353 GAGTCAGTCTATGATGTTGTCTAGAAAAGGACCAGCTGATCTGAAAAGGA-ATGTATCTT 1411
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 1440 GAGTCAGTCTATGATGTTGTCTAGAAAAGGACCAGCTGGTCTGAAAAGGACA-GTATCTT 1498
Query 1412 CTGCACAAGCGAAA-AGGGAAGCGGCGATTGTGCGTTCGGGTTTGAGTAAAGAAGAAGGT 1470
|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1499 CTGCACAAGC-AAAGAGGGAAGCGGCGATTGTGCGTTCGGGATTGAGTAAAGAAGAGGGT 1557
Query 1471 TTGGAAGAGATTGATAAACTTCAGAAGGGGATCTTGGCGTTGCAGACTGAGAAGGAGTTT 1530
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1558 TTGGAAGAGATTGATAAGCTTCAGAAGGGGATCTTGGCGTTGCAGACCGAGAAAGAGTTT 1617
Query 1531 GTGAGGAGCTCATATGAAGAGTCTTATGAGAGATATTGGGATTTGGAGAATGAAGTGACT 1590
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1618 GTGAGGAGCTCATATGAACAGTCTTATGAGAGGTATTGGGATTTGGAGAATGAAGTGACT 1677
Query 1591 GAGATGCAGAAGAGTGTTTGTAACTTACAAGATGAGTTTGGTCTTGGTGCTTCTATTGAT 1650
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1678 GAGATGCAGAAGAGCGTTTGTAACTTACAAGATGAGTTTGGTCTTGGTGCTTCGATTGAT 1737
Query 1651 GATAGCGATGCTAGGACGTTGATGGCGAGTACCGCTTTGAGTTCTTGTAGGGACACACTT 1710
||||||||||||||||| ||||||||||| || || ||||||||||||| ||||||||||
Sbjct 1738 GATAGCGATGCTAGGACCTTGATGGCGAGCACTGCGTTGAGTTCTTGTAAGGACACACTT 1797
Query 1711 GCTAAGCTTGAGGAGAAACAGAAGATATCTATTGAAGAAGCCGAGATTGAGAAAGGAAGG 1770
|||||||||||||||||||||| || ||| |||||||||| || |||||||||||||||
Sbjct 1798 GCTAAGCTTGAGGAGAAACAGAGGAAATCGGTTGAAGAAGCGGAAATTGAGAAAGGAAGG 1857
Query 1771 ATTACTACTGCGAAAGAAAGGTTTTATGCATTGAGGAACAAGTTTGAGAAACCGGAGAGT 1830
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1858 ATTACTACTGCGAAAGAACGGTTTTATGCATTGAGGAACAAGTTTGAGAAACCGGAAAGT 1917
Query 1831 GATGTTCTTGATGAGGTTATCAGGACAGAC---GAAG-A-AG-AAGA-----A-GATGTG 1878
|||||||||||||||||| | ||||||||| |||| | || |||| | ||||||
Sbjct 1918 GATGTTCTTGATGAGGTTGTTAGGACAGACGAAGAAGAAGAGAAAGAGGCTGATGATGTG 1977
Query 1879 GTTCAAGAATCGAGCTATGAATCTGAGAGAGAAGACTCAAATGAGAATCTTACTGTTGTG 1938
||||||||||||| ||||||||| ||||| ||||| |||| |||||||||||||||||||
Sbjct 1978 GTTCAAGAATCGATCTATGAATCCGAGAGGGAAGATTCAAGTGAGAATCTTACTGTTGTG 2037
Query 1939 AAGCTTGCAGAGAAGATTGATGATCTTGTGCATAGGGTGGTTTCATTGGAGACCAATGCT 1998
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AAACTTGCAGAGAAGATTGATGATCTTGTGCATAGGGTGGTTTCATTGGAGACCAATGCT 2097
Query 1999 TCCTCTCATACTGCATTGGTGAAGACATTAAGATCAGAGACAGATGAGTTACATGAACAT 2058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TCCTCTCATACTGCATTGGTGAAGACATTAAGATCAGAGACAGATGAGTTACATGAACAT 2157
Query 2059 ATCCGTGGTCTAGAGGAGGACAAAGCAGCTCTTGTTTCGGATGCCACAGTTATGAAACAG 2118
|| ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 2158 ATTCGTGGTCTAGAGGAGGACAAAGCGGCTCTTGTTTCGGATTCCACGGTTATGAAACAG 2217
Query 2119 AGGATAACGGTGCTTGAAGACGAGCTGAGAAATGTTAGAAAACTATTCCAGAAAGTAGAA 2178
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2218 AGGATCACGGTGCTTGAAGACGAGCTGAGAAATGTTAGAAAACTATTCCAGAAAGTGGAA 2277
Query 2179 GATCAAAACAAGAATCTACAGAACCAATTCAAGGTAGCTAACAGGACTGTTGATGATTTA 2238
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 2278 GATCAAAACAAGAATCTACAGAGCCAATTCAAGGTAGCTAATAGGACTGTTGATGATTTA 2337
Query 2239 TCTGGCAAGATACAAGATGTGAAGATGGATGAAGATGTTGAAGGAGCTGGAATTTTCCAG 2298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2338 TCTGGTAAGATACAAGATGTGAAGATGGATGAAGATGTTGAAGGAGCTGGAATTTTCCAG 2397
Query 2299 GAATTGCCTGTTGTTTCAGGATCAGAAGATTCTCGAGATGATTTGAAGTCAGTCTCAACG 2358
|||||| | ||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 2398 GAATTGGCAGTTGTTTCAGGATCAGAAGATTCACGCGATGATTTGAAGTCAATCTCAACG 2457
Query 2359 GAGA---AAA----------CG---A-A----GAA-A--GATGTTATTGCAGTTAAGGAG 2394
|||| ||| || | | ||| | ||||| |||| |||||| |||
Sbjct 2458 GAGACGGAAATGAGGAGTAGCGTGGAGAAAACGAAGAAAGATGTGATTGTAGTTAAAGAG 2517
Query 2395 AGTGAAGATGGTGAAAGAGCTCAAGAAGAGAAACCAGAGATAAAAGATTCTTTTGCGTTA 2454
|||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 2518 AGTGAAGACAGTGAAAGAGCTCAAGAAGAGAAATCAGAGATGAAAGATTCGTTTGCGTTA 2577
Query 2455 TCAGAAACCGCAAGCACTTGTTTCGGAACAGAAGCTGAAGATCTGGTGACGGAAGACGAG 2514
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2578 TCAGAAACTGCTAGCACTTGTTTCGGAACAGAAGCAGAAGATCTGGTGACGGAAGACGAG 2637
Query 2515 GATGAAGAGACACCAAACTGGAGACATTTGTTACCAGATGGCATGGAGGATAGAGAGAAA 2574
||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 2638 GATGAAGAGACACCAAACTGGAGGCAGTTGTTACCTGATGGCATGGAGGATAGAGAGAAG 2697
Query 2575 GTTCTGTTAGATGAATACACATCAGTACTAAGGGATTATAGAGAAGTAAAGAGAAAGTTA 2634
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2698 GTTCTGTTAGATGAATACACATCAGTGTTAAGGGATTATAGAGAAGTAAAGAGAAAGTTA 2757
Query 2635 GGTGATGTTGAGAAAAAGAACCGGGAAGGATTTTTCGAGCTAGCATTACAGTTGAGAGAA 2694
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 2758 GGTGACGTTGAGAAAAAGAACCGGGAAGGATTCTTCGAGTTAGCATTACAGTTGAGAGAA 2817
Query 2695 CTCAAGAATGCTGTTGCTTACAAAGACGTGGAGATTCAGTCGTTACGCCAAAAACTT-GA 2753
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2818 CTCAAGAATGCTGTTGCTTACAAAGACGCAGAGATTCAGTCGTTACGCCAAAAACTCAGC 2877
Query 2754 -CACCACTGGGAAAGATTCACCACACCAAGGAGAAGGAAATAACCAGTTGGAACATGAAC 2812
| || | ||||||||||| |||||||||| |||| ||||||| ||||||||||||||||
Sbjct 2878 TCGCC-C-GGGAAAGATTCGCCACACCAAGTAGAACGAAATAATCAGTTGGAACATGAAC 2935
Query 2813 AAGGACATCATGAAACTGTGAGCATTTCGCCAACTTCTAACTTTTCGGTTGCCACCACGC 2872
||| ||||||||||| |||||||||||| |||||||| |||||||||||| |||| ||||
Sbjct 2936 AAGTACATCATGAAAGTGTGAGCATTTCACCAACTTCCAACTTTTCGGTTTCCACTACGC 2995
Query 2873 CGCATCATCAAGTAGGAGATGTGAAGAGAACACCTGGAAGAACAAAGTCAACTGAGGTTA 2932
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2996 CGCATCATCAATTGGGAGACATGAAGAGAACACCTGGAAGAACAAAGTCAACTGAGGTTA 3055
Query 2933 GGGTGAAATTTGCAGACGTTGATGACAGCCCGAGAACAAAGATTCCAACTGTGGAAGACA 2992
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3056 GGGTGAAATTTGCAGACGTTGATGACAGCCCAAGAACAAAGATTCCAACTGTGGAAGACA 3115
Query 2993 AAGTGCGTGCAGACATTGACGCGGTGTTGGAAGAGAATCTCGAGTTTTGGTTAAGATTTA 3052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3116 AAGTGCGTGCAGACATTGACGCGGTGTTGGAAGAGAATCTCGAGTTTTGGTTAAGATTTA 3175
Query 3053 GTACATCGGTACATCAGATACAGAAGTACCAGACAACAGTTCAAGATCTGAAATCAGAGC 3112
| ||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct 3176 GCACATCAGTACATCAGATACAGAAGTACCAAACAACGGTTCAGGATCTCAAATCAGAGC 3235
Query 3113 TATCGAAACTGAGAATTGAAAGCAAGCAACAACAGGAATCTCCAAGAAGTAGTAGTAATA 3172
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3236 TATCGAAACTGAGAATCGAAAGCAAGCAACAACATGAATCTCCAAGAAGTAGTAGTAATA 3295
Query 3173 CTGCAGTTGCATCAGAGGCAAAGCCTATCTATAGACACCTCAGAGAGATTCGAACAGAAC 3232
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 3296 CTGCAGTTGCATCAGAGGCCAAGCCTATCTATAGACACCTTAGAGAGATCCGAACAGAAC 3355
Query 3233 TACAGCTATGGCTAGAGAACAGTGCGGTTCTTAAAGACGAACTCCAGGGAAGGTATGCGT 3292
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 3356 TACAGCTATGGCTAGAGAACAGCGCGGTTCTTAAAGACGAACTCCAGGGAAGGTATGCAT 3415
Query 3293 CATTAGCTAATATCCAAGAAGAAATCGCAAGAGTCACGGCTCAATCAGGTGGCAATAAAG 3352
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3416 CACTAGCTAATATCCAAGAAGAAATCGCAAGAGTCACGGCTCAATCAGGTGGCAATAAAG 3475
Query 3353 TAAGTGATTCAGAGATTAGTGGTTACCAAGCTGCAAAGTTCCATGGAGAGATACTTAACA 3412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3476 TAAGTGATTCAGAGATTAGTGGTTACCAAGCTGCAAAGTTCCATGGAGAGATACTTAACA 3535
Query 3413 TGAAACAGGAGAACAAAAGGGTCTCGACCGAACTTCACTCGGGTCTTGACCGTGTAAGAG 3472
|||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 3536 TGAAACAGGAAAACAAAAGGGTCTCAACCGAACTTCAATCAGGTCTTGATCGTGTAAGAG 3595
Query 3473 CATTGAAAACCGAAGTGGAGAGGATTCTAAGTAAACTAGAAGAGGATCTTGGGATCTCAA 3532
|||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 3596 CATTAAAAACTGAAGTGGAGAAGATTCTGAGTAAACTAGAAGAGGATCTTGGGATCTCAA 3655
Query 3533 GTGCAACAGAAGCAAGAACAACTCCA-AGCAAGAGCTCATCAAGTGGAAGACCGAGGATT 3591
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 3656 GTGCAACAGAAGCAAGAACAACTC-AGAGCAAGAGCTCATCGAGTGGAAGACCGAGGATT 3714
Query 3592 CCATTACGGTCATTCTTGTTCGGTGTCAAGTTAAAGAAGAATAGACAGCAAAAGCAATCA 3651
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3715 CCATTACGGTCATTCTTGTTCGGTGTCAAGTTAAAGAAGAATAGACAACAGAAGCAATCT 3774
Query 3652 GCATCATCCCTCTTCTCTTGTGTCAGTCCATCTCCAGGTCTGCATAAACAGTCTAGTTAC 3711
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3775 TCATCATCTCTCTTCTCTTGTGTCAGTCCATCTCCAGGTCTGCAAAAACAGTCTAGTTAC 3834
Query 3712 AGTAGGCCACCTGGGAAGCTCCCTGAATAA 3741
| ||| |||||||| |||||||||||||||
Sbjct 3835 AATAGACCACCTGGAAAGCTCCCTGAATAA 3864
Score = 963 bits (521), Expect = 0.0
Identities = 711/799 (89%), Gaps = 27/799 (3%)
Strand=Plus/Plus
Query 9 GACGAGGGCGAAGTCCAAATTCCAGTCTCTCTCAGCATGTCGCTTCACGCCGT-TACCGG 67
||||| | ||| ||| ||||| ||||||||||||||| ||||| |||| || | | ||||
Sbjct 3 GACGACGACGAGGTCAAAATTTCAGTCTCTCTCAGCACGTCGCCTCACACC-TCTGCCGG 61
Query 68 AACCCAATACCTCACCGAGCACTTACTCCAAGACTTTACCAAAACCCAATTCCTCGCCGG 127
|||||||| |||| ||| | |||| |||||| ||||||||| ||||||||||||| || |
Sbjct 62 AACCCAATCCCTCGCCGCGTACTTTCTCCAAAACTTTACCAGAACCCAATTCCTCTCCAG 121
Query 128 GAACCGACGGAACTTTCCCAACACCGTTTCCCTTAGCTGTCATCACTCCAATCAAAACCC 187
||||| |||||||||||| |||||| ||||||||| | |||||||||||||||||||||
Sbjct 122 GAACCAACGGAACTTTCCGAACACCATTTCCCTTATCACTCATCACTCCAATCAAAACCC 181
Query 188 TAAAATCCGTCACATTATCCGATTGGTGGCTAACAAAGAAAGGCAAAGATTTGTGTATTA 247
|||||||| |||||||||||||||||||||||| ||||||| |||||| | | |||| |
Sbjct 182 TAAAATCCATCACATTATCCGATTGGTGGCTAAAAAAGAAAAGCAAAGGTCTAAGTATCA 241
Query 248 AAGGATTCGAATCAAATGGTGCATCTGGAGTAAGACTGTTTTCATCAGGAACAATCTCAA 307
||||||||||||||| |||| ||||||||| ||||| ||||| ||||||||||||||||
Sbjct 242 CAGGATTCGAATCAAACGGTGGATCTGGAGTCAGACTATTTTCTTCAGGAACAATCTCAA 301
Query 308 AGCGACATGAAAGTACAACTCTTGAAGCAATTGATGGGATTACAATTTCTATCAATGGTT 367
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 302 AACGACATGAAAGTACCACTCTTGAAGCAATTGATGGGATTACAATTTCTATCAATGGAT 361
Query 368 TCATCAATCGATCTCGTTGTCTAGAGAATGGTATTTCGATTGAGGTTTGTAATCGTTTTC 427
||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 362 TCATCAATCGATCTCGTAGTCTAGAGAACGGTGTTTCGAATGAGGTTTGTAATCGTTTTC 421
Query 428 GTTTAGGGTTTCCTTATGATTGGGAAGATTACAATgaagaagaagaaga-gaagaagaag 486
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 422 GTTTAGGGTTTCCTTATGATTGGGAAGATTACAATGTAGAAGAAGAAGAAGA-GAAGAAG 480
Query 487 aa-gaaTGTTGATATTTCGTTTGATGATATTCCTGTGAATAGGTATCAGGATCTTTATTC 545
|| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AATGT-TGTTGATATTTCGTTTGATGATATTCCAGTGAATAGGTATCAGGATCTTTATTG 539
Query 546 TCTTGAGGGTTGTTTGAAAGATAAGATTTTGGACGATGTTGTTGGTAGTTTAAGAGATTT 605
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 540 TCTTGAGGGTTGTTTGAAAGATAAGATTTTGGATGATGTTGTTAGTAGTTTAAGAGATTT 599
Query 606 GGTTTGTCAGAAATCTGATAAGGCATGTGAGAAATCAAGAGTTGGtgatgttgatgatga 665
||||||||||| || |||||||| |||||||||||||||| || | | | ||
Sbjct 600 GGTTTGTCAGATATTTGATAAGGAATGTGAGAAATCAAGA-------AT-T-G--G-TG- 646
Query 666 tgatgatgatgatgatgatAAGAGTTTGGTTTCGAGGGTTGTGGGAGTGAAGACTAGAGG 725
| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 647 -G-TGATGATG--G-TGA---GAGTTTGGTTTCGAGGGTTGTGGGAGTGAAGACTAGAGG 698
Query 726 TATGCTTAGAAGGAGAGAAGAGTATGAAGCTTCTATTGGGAAAAGAGTTGCGACCATGTC 785
|||||||||| ||||||||||||||||||||||||| |||||||||| |||||| || ||
Sbjct 699 TATGCTTAGACGGAGAGAAGAGTATGAAGCTTCTATCGGGAAAAGAGATGCGACGATCTC 758
Query 786 TGGGAAAAGAGTTGTGACA 804
|||| |||||| |||||||
Sbjct 759 TGGGGAAAGAGCTGTGACA 777
> Ahg312011 jgi|Araly1|312011|fgenesh1_pm.C_scaffold_1000791
Length=2784
Score = 675 bits (365), Expect = 0.0
Identities = 723/889 (81%), Gaps = 52/889 (6%)
Strand=Plus/Plus
Query 2875 CATCATC-AAGTAGGAGA-TGTGAAGAGAACACCTGGAAGAA-CAAAGTCA-ACTGAGGT 2930
||||| | ||| || ||| | |||||||| || || ||| || ||||| | || | |||
Sbjct 1909 CATCAGCAAAG-AGAAGACT-TGAAGAGAGCATCT-GAACAAGCAAAGGAAGAC-GGGGT 1964
Query 2931 TAGGGTGAAATTTGCAGACGTTGATGACAGCCCGAG-AACAAAGATTCCAACTGTGGAAG 2989
|| |||||||||||||||| || ||||||||| || || ||| ||||||||||||||||
Sbjct 1965 TAAGGTGAAATTTGCAGACATTAATGACAGCCTAAGAAAGAAA-ATTCCAACTGTGGAAG 2023
Query 2990 ACAAAGTGCGTGCAGACATTGACGCGGTGTTGGAAGAGAATCTCGAGTTTTGGTTAAGAT 3049
| |||||||||| ||| |||||||||||| |||| |||||| ||||||| ||||||||||
Sbjct 2024 AAAAAGTGCGTGGAGATATTGACGCGGTGCTGGAGGAGAATATCGAGTTCTGGTTAAGAT 2083
Query 3050 TTAGTACATCGGTACATCAGATACAGAAGTACCAGACAACAGTTCAAGATCTGAAATCAG 3109
|||||||||| || |||||||||||||||||||| ||| ||||||| || ||||||||||
Sbjct 2084 TTAGTACATCTGTTCATCAGATACAGAAGTACCATACATCAGTTCAGGACCTGAAATCAG 2143
Query 3110 AGCTATCGAAACTGAGAATTGAAAGCAAGCAACAACAGG-AATCTCCAAGAAGTAGTAGT 3168
|||||||| | | ||||||||||||||||| | ||| || | | |||| ||||||
Sbjct 2144 AGCTATCG--A---A-AATTGAAAGCAAGCAAC-A-AGGTAA--TGCTGGAAGCAGTAGT 2193
Query 3169 AATACTGCAGTTGCATCAGAGGCAAAGCCTATCTATAGACACCTCAGAGAGATTCGAACA 3228
|| ||| || |||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 2194 AACACTTCACTTGCATCAGAAGCAAAGCCTATATATAGACACCTTAGAGAGATTCGGACA 2253
Query 3229 GAACTACAGCTATGGCTAGAGAACAGTGCGGTTCTTAAAGACGAACTCCAGGGAAGGTAT 3288
|| || ||| ||||||||||||||||||| ||||| | ||||||||| |||| || |||
Sbjct 2254 GAGCTGCAGTTATGGCTAGAGAACAGTGCAGTTCTGAGAGACGAACTTGAGGGTAGATAT 2313
Query 3289 GCGTCA-TTAGCTAATATCCAAGAAGAAATCGCAAGAGTCACGGCTCAATCAGGTGGCAA 3347
|| || || || |||||| |||| ||| | |||| |||||| ||||||| ||||| ||
Sbjct 2314 GCAACACTTTGC-AATATCAAAGATGAAGTTTCAAGGGTCACGTCTCAATCGGGTGG-AA 2371
Query 3348 -TAAAGTAAGTGA-TTCAGAGATTAGTGGTTACCAAGCTGCAAAGTTCCATGGAGAGATA 3405
||||||||| | | ||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 2372 CTAAAGTAAG-CAGTACAGAGATAAGCGGTTACCAGGCTGCAAAGTTCCATGGTGAGATA 2430
Query 3406 CTTAACATGAAACAGGAGAACAAAAGGGTCT-CGACCGAACTTCACTCGGGTCTTGACCG 3464
||||||||||||||||||||||||| ||| | | || |||||||| | || ||||| ||
Sbjct 2431 CTTAACATGAAACAGGAGAACAAAAAGGTGTTCAAC-GAACTTCAAGCAGGCCTTGATCG 2489
Query 3465 TGTAAGAGCATTGA-AAACCGAAGTGGAGAG-GATTCTAAGTAAACTAGAAGAGGATCTT 3522
|| || | || ||| ||| ||||| || || | || || | |||||||||||| |||||
Sbjct 2490 TGCAAAAACACTGAGAAAT-GAAGTAGAAAGAG-TTGTATGCAAACTAGAAGAGAATCTT 2547
Query 3523 GGGATCTC-AA-GTGCAACAGAAGCAAGAACAACTCCAAGCAAGAGC---TCATCA--A- 3574
||||||| || ||| | | | || | || | ||| ||||||| | |||||| |
Sbjct 2548 GGGATCTTGAATGTG-A-C-G--GCTACAAGATCTCTGAGCAAGAACACCTCATCATCAA 2602
Query 3575 GTGGAA-GACCGAGGATTCCATTACGGTCATTCTTGTTCGGTGTCAAGTTAAAGAAGAAT 3633
|||||| | || ||||||||| || ||||||||||||| |||||||||||||||||| ||
Sbjct 2603 GTGGAAAG-CCTAGGATTCCACTAAGGTCATTCTTGTTTGGTGTCAAGTTAAAGAAGTAT 2661
Query 3634 AGACAGCAAAAGCAATCA-GCATCATCCCTCTTCTCTTGTGTCAGTCCATCTCCAGGTCT 3692
| ||| ||| | || || || ||| | ||||||||||||||||||||||||||| |||
Sbjct 2662 AAACAACAACCG-AAGCAAGCCTCAACAATCTTCTCTTGTGTCAGTCCATCTCCAGCTCT 2720
Query 3693 GCATAAACAGTCTAGTTACAGTAGGCC-ACCTGGGAAGCTCCCTGAATA 3740
||| ||||||| ||| |||| | | || ||||| |||| ||||||||||
Sbjct 2721 GCAAAAACAGTGTAGCTACATT-GTCCCACCTGTGAAGGTCCCTGAATA 2768
Score = 540 bits (292), Expect = 3e-152
Identities = 735/938 (78%), Gaps = 73/938 (8%)
Strand=Plus/Plus
Query 912 ATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACA 971
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACA 60
Query 972 AAACAATCCAAATGGCTCGAACACAATCTTC-----A-GG-GTAGAA--T--A-T--ACT 1017
||||||||||||||||||||||||||||| | | || | |||| | | | ||
Sbjct 61 AAACAATCCAAATGGCTCGAACACAATCTCCAAGATATGGAGGAGAAGGTAAAGTACACA 120
Query 1018 CTTAAGATTATAGATGAAGATGGAGACACTTTTGCTAAAAGAGCTGAGATGTATTACCGT 1077
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTAAGATCATAGATGAAGATGGAGACACTTTTGCTAAAAGAGCAGAGATGTATTACCGT 180
Query 1078 AAAAGACCAGAGATTGTTAATTTCGTGGAGGAAGCTTTTCGTTCATACCGCGCTTTAGCT 1137
||||| || |||||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 181 AAAAGGCCTGAGATTGTAAATTTCGTGGAAGAAGCGTTTCGATCATACCGTGCTTTAGCA 240
Query 1138 GAACGTTATGATCATTTATCTAGAGAGCTTCAAAGCGCAAACCGTACAATAGCCACAGCT 1197
||||| ||||||||||| || | ||| |||||||| || || | || || || || |||
Sbjct 241 GAACGCTATGATCATTTGTCCACAGAACTTCAAAGTGCCAATCATATGATCGCTACCGCT 300
Query 1198 TTCCCTGAACATGTT-CAGTTTCCT-TTAGAGGATGATAGTGATGAAAATGAAGATTACG 1255
||||||||||||||| || |||||| || | |||| | ||||| | || ||| |
Sbjct 301 TTCCCTGAACATGTTCCA-TTTCCTCTT-GTTGATG--A-TGATG---ACGACGATGGTG 352
Query 1256 ACGGAAGGCCACGAAAACCGCCTAAGCATCTTCATCTTATTCCCAAGGGGATCAACATAC 1315
| | | ||| | ||||| ||||||||||||||||| ||||||| || | ||||||||
Sbjct 353 A-TG-ATCCCAAG-AAACCACCTAAGCATCTTCATCTCATTCCCACTGGAACCAACATAC 409
Query 1316 CTGAAGTTCCGGATATTCCTAAGAAGAAAGATTTCAGGAGTC-A-GTCT-ATGATGTTGT 1372
| |||| || || |||| |||||||| |||| ||| | | ||| ||| ||||||
Sbjct 410 CACAAGTCCCTGAGGTTCC---CAAGAAAGAGTTCAAGAGCCAATCTCTGATGGTGTTGT 466
Query 1373 CTAGAAAA-GGACCAGCTGATCTGAAAAGGAATGTATCTTCTGCACAAGCGAAAAGGGAA 1431
| | |||| ||||| | || | ||||||| |||||||||
Sbjct 467 CGA-AAAAGGGACCTGATGTTTTGAAAAGTTCGGTATCTTCT------------------ 507
Query 1432 GCGGCGATT-GTGCGTTCGGGTTTGAGTAAAGAAGAAGG-TTTGGAAGAGATTGATAA-A 1488
| || ||| ||| |||| || ||||||||||||| ||| |||| ||||| ||||| |
Sbjct 508 TCTGC-ATTGGTGAGTTCCGGATTGAGTAAAGAAG-AGGCACTGGAGGAGATCGATAAGA 565
Query 1489 CTTCAGAAGGGGATCTTGGCGTTGCAGACTGAGAAGGAGTTTGTGAGGAGCTCATATGAA 1548
|||| ||||| ||||||| | |||||||||||||||||||||||||||| || |||||
Sbjct 566 -TTCACAAGGGTATCTTGGTGCTGCAGACTGAGAAGGAGTTTGTGAGGAGTTCTTATGA- 623
Query 1549 G-AGTCTTATGAGAGATATTGGGATTTGGAGAATGAAGT-GACTGAGATGCAGAAGAGTG 1606
| | |||||||| || |||||| |||| ||||||||||| || || ||||||||||| |
Sbjct 624 GCAATCTTATGAAAGGTATTGGAATTTAGAGAATGAAGTTGAA-GAAATGCAGAAGAGAG 682
Query 1607 TTTGTAACTTACAAGATGAGTTTGGTCTTGGTGCTTCTATTGATGATAGC-GATGCTAGG 1665
|||| | ||||||||||||||||| ||||||| || || ||| || || ||||||
Sbjct 683 TTTGCAGTTTACAAGATGAGTTTGGGGTTGGTGCAGAGATCGAAGAT-GCTGAAGCTAGG 741
Query 1666 ACGTTGATGGCGAGTACCGCTTTGAGTTCTTGTAGGGACACACTTGCTAAGCTTGAGGAG 1725
||| || |||| || || ||| | || || |||| || ||| |||||||||||||||||
Sbjct 742 ACGCTGGTGGCAAGCACTGCTCTAAGCTCCTGTAAAGAGACAATTGCTAAGCTTGAGGAG 801
Query 1726 AAACAGAAGATATCTATT--GAAGAAGCCGAGATTGAGAAAGGAAGGATT-ACTACTGCG 1782
| |||| | ||| | || ||||| || || |||||||| ||||||||| | ||||||
Sbjct 802 ACGCAGAGGCTAT-T-TTCAGAAGATGCAGAAATTGAGAAGGGAAGGATTGA-TACTGC- 857
Query 1783 AA-AGAAAGGTTTTATGCATTGAGGAACAAGTTTGAGA 1819
|| ||| |||||| | ||| ||| || |||||||||||
Sbjct 858 AACAGAGAGGTTTGAAGCACTGAAGACCAAGTTTGAGA 895
Score = 383 bits (207), Expect = 6e-105
Identities = 643/840 (77%), Gaps = 84/840 (10%)
Strand=Plus/Plus
Query 1949 AGAAGATTGATGATCTTGT-GCATAGGGTGGTTTCAT-TGGAGACCAA-TGC-TTCCTCT 2004
||||||| ||||| ||||| | | || |||||||| | |||| | ||| || || |||
Sbjct 1013 AGAAGATAGATGAACTTGTAG-AGAGAGTGGTTTC-TCTGGA-AACAACAGCGTT-GTCT 1068
Query 2005 CATACTGCATTGGTGAAGACATTAAGATCAGAGACAGATGAGTTACATGAACATATCCGT 2064
||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1069 CATACGGCATTGGTAAAGACATTAAGAACAGATACAGATGAGTTACATGAACATATCCGT 1128
Query 2065 GGTCTAGAGGAGGACAAAGCA-GCTCTTGTTTCGGA-TGCCACAGTTATGAA-ACAGAGG 2121
||| |||| || ||||| ||| | |||||| || || | ||| || ||||| | | |||
Sbjct 1129 GGTTTAGAAGAAGACAAGGCATG-TCTTGTATCAGACT-CCATAGACATGAAGAAA-AGG 1185
Query 2122 ATAACGGTGCTTGAAGACGAGCTGAG-AAATGTTAGAAAACTATTCCAGAAAGTAGAAGA 2180
||||||| |||||||| ||||| || ||| |||||||| || ||||||| ||| |||||
Sbjct 1186 ATAACGGCCCTTGAAGATGAGCTAAGCAAA-GTTAGAAACCTGTTCCAGAGAGTGGAAGA 1244
Query 2181 TCAAAACAAGAATCTACAGAACCAATTCAAGGTAGCTAACAGGACTGTTGATGATTTATC 2240
|| ||||||||||| ||||| || || | | |||||| || || | | | || |||||
Sbjct 1245 CCAGAACAAGAATCTTCAGAAGCACTTGACTGAAGCTAATAGCACAGCTAAGGACTTATC 1304
Query 2241 TGGCAAGATACAAGATGTGAAGATGGATGAAGATGTTGAAGGAGCTGGAATTTTCCAGGA 2300
|| ||| |||| || ||||| |||||||||||||| ||||| | ||| ||| || |||
Sbjct 1305 AGGAAAGTTACAGGAAGTGAAAATGGATGAAGATGTCGAAGGTGATGGGATTAACCCGGA 1364
Query 2301 ATTGCCTGTTGTTTCAGGATCAGAAGATTCTCGAGATGATTTGAAGTCAGTCTCAA-CGG 2359
| || ||| ||||| || ||| || | || |||||| | ||| |||||| |||
Sbjct 1365 A--GC-TGTC----CAGGAGGAG--GATCCTAGTGAGGATTTGGATTCAATCTCAAACGG 1415
Query 2360 AGAAAACGAAGAAAGA-TGTTATTGCAG-TTAAGGAG---A--GT-G--AAG-ATGGT-G 2407
| | | || ||||| || | | | |||| ||| | || | || || || |
Sbjct 1416 GGGAGA-GAT-AAAGAGTGC-AGAGGAAATTAAAGAGGCCATTGTAGTCAAACATAGTAG 1472
Query 2408 A-A--A-GAG-C--T-CAAGAAGAGAAACCAGAGATAAAAGATTCTTTTGC-G-TT-ATC 2456
| | | ||| | | || ||||||||| |||||| || ||| |||| || | || |||
Sbjct 1473 AGATCAAGAGTCGGTGCAGGAAGAGAAATCAGAGACAAGAGACTCTTGTGGTGGTTTATC 1532
Query 2457 AGAAACCGCAAGCACTTG-TTTCGGAACAGAAGCTGAAGATCTGGTGACGGAAGACGAGG 2515
|||||| | ||||||||| ||| || || | | || || ||||||| ||||
Sbjct 1533 AGAAACAGAAAGCACTTGCTTT-GG--CA----C--A-GA---GG---CGGAAGATGAGG 1576
Query 2516 ATGAAGAGACACCAAACTGGAGACATTTGTTACC---AGATGGCATGGAGGATAGAGAGA 2572
| || |||| | | |||||| | |||||||| |||||||||||||||||||||||
Sbjct 1577 A-GAGGAGA-A--A--CTGGAGGCGGTTGTTACCCGCAGATGGCATGGAGGATAGAGAGA 1630
Query 2573 AAGTTCTGTTAGATGAATACACATCAGTACTAAGGGATTATAGAGAAGTAAAGAGAAAGT 2632
| ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1631 AGGTTCTATTGGATGAATACACATCAGTACTAAGGGACTATAGAGAAGTGAAGAGAAAGT 1690
Query 2633 T-AGGTGATGTTGAGAAAAAGAACCGGGAAGGATT-TTTCGAGCTAGCATTACAGTTGAG 2690
| || ||| |||||||| |||||||| || || || ||| ||||| ||||| ||||||||
Sbjct 1691 TGAG-TGAAGTTGAGAAGAAGAACCGTGATGGCTTCTTT-GAGCTGGCATTGCAGTTGAG 1748
Query 2691 AGAACTCAAGAATGCTGTTGCTTACAAAGACGTGGAGATT-CAGTCGTTACGCCAAAAAC 2749
||| ||||||||||||||| ||| | |||||||||| ||| || | ||||||||| ||||
Sbjct 1749 AGAGCTCAAGAATGCTGTTTCTTGCGAAGACGTGGA-ATTTCATTTGTTACGCCAGAAAC 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141345826122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5