BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58225.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475434 jgi|Araly1|475434|fgenesh2_kg.2__564__AT1G58225.1 638 0.0
> Ahg475434 jgi|Araly1|475434|fgenesh2_kg.2__564__AT1G58225.1
Length=541
Score = 638 bits (345), Expect = 0.0
Identities = 422/459 (92%), Gaps = 6/459 (1%)
Strand=Plus/Plus
Query 79 AGAGCTTAGTATCAAAATGAAAGCGAGATCAAGC-AAAGGAGGTTTGGTTGCAATATTGG 137
|||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 34 AGAGCTTAGTATCAAAATGAAAGCGAGATCAA-CTAAAGGAGGCTTGGTTGCAATATTGG 92
Query 138 CTCTAGTTGTTTATTGCTTCTTCGAGAATATGGATGGGAACTCGATCGATGTTCCAT-CT 196
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct 93 CTATAGTTGTTTATTGCTTCTTCGAGAATATGGATTGGAACTCGATCGATGTTTC-TCCT 151
Query 197 TATGAACCTGTTGGAAGTTA-TTCCACTGGAGGTTTCTTTGCTGTCGAAAACAAAGACAA 255
|||||||||||||||||||| || | ||||||||||||||||| |||| | |||| ||||
Sbjct 152 TATGAACCTGTTGGAAGTTATTTTC-CTGGAGGTTTCTTTGCTCTCGACAGCAAAAACAA 210
Query 256 GATGCTAAAATCATTCCCATCTTATAATGAATATCTCAAAAGATTCAATCTAGCCTCAGT 315
|||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 211 GATGCTAAAATCGTTCCCATCTTATTACGAGTATCTCAAAAGATTCAATCTAGCCTCAGT 270
Query 316 GGAAATTTGGCAAACGGTGAGACGCAAGTGTAGAGATAGTTTCATCTCCTTGAGCATAAA 375
||||||||||||||| |||||| ||||||||||||| |||||||| | |||||||||||
Sbjct 271 GGAAATTTGGCAAACAGTGAGAAACAAGTGTAGAGATGGTTTCATCACTTTGAGCATAAA 330
Query 376 ATCATTGCATTTTTTCGTCTCAAAGTTTACGCAGTTCAGATATTCAATATCAACCGTAGC 435
||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | |
Sbjct 331 ATCATTGCACTTTTTCGTCTCAAAGTTTATGCAATTCAGATATTCAATATCAACCGCAAC 390
Query 436 TCCAACCAGTCGCTCGTGGACTTCTCGAATTATTTTCTGGGTAACATTGACTCGATCAGT 495
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 391 TCCAATGAGTCGCTCGTGGACTTCTAGAATTATTTTCTGGGTAACATTGACTCGATCAGT 450
Query 496 CTCGTCCATGGCCAATGATACAACTCTATGAATAGTTTT 534
|||||||||||| ||||||||| |||||||| || ||||
Sbjct 451 CTCGTCCATGGCTAATGATACAGCTCTATGATTAATTTT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5