BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G58242.1

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701                     274    4e-73


> Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701
Length=273

 Score =  274 bits (148),  Expect = 4e-73
 Identities = 191/211 (91%), Gaps = 6/211 (3%)
 Strand=Plus/Plus

Query  10   ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGCTTTATTTAT  68
            ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| 
Sbjct  1    ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC  59

Query  69   AATGA-TGGTTTCAACATATGCGAGTACGATAGAAGTATGTGTTAAGCATTGTGTCCCGA  127
             || | ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct  60   GAT-AGTGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA  118

Query  128  ATCAATGCATGAAAGTGTT-TAAAAAAGCAACTCTTCCGTTATGTGAGAATGCTTGCAAA  186
            |||||||||||||||| || | |||| ||||||||||| |||||||||||||||||||||
Sbjct  119  ATCAATGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA  177

Query  187  AAGCTTTGCAACCAGAACAAATTTGCTCATG  217
            ||| |||||||||| ||||||||| || |||
Sbjct  178  AAGTTTTGCAACCAAAACAAATTTTCTGATG  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14613590587


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5