BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58260.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315417 jgi|Araly1|315417|fgenesh1_pm.C_scaffold_2000450 2254 0.0
Ahg925222 jgi|Araly1|925222|scaffold_200783.1 737 0.0
> Ahg315417 jgi|Araly1|315417|fgenesh1_pm.C_scaffold_2000450
Length=1587
Score = 2254 bits (1220), Expect = 0.0
Identities = 1475/1598 (92%), Gaps = 18/1598 (1%)
Strand=Plus/Plus
Query 1 ATGACTATTATCACGAATCCATCCAGTTTCACTCTTGTTTTAATTTCCATTACGCTGGTC 60
|||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGTATTATCACGAATCCATCTAGTTTCACACTTGTTTTAATTTCCATTACGCTGGTC 60
Query 61 CTGGCTCTTGCTAGACGTTTTTCAAGATTCATGAAACCAAAAGGTCAGCTTCCTCCCGGA 120
|| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct 61 CTAGCTCTTGCTAGACGATTTTCAAGATCCATGAAACCAAAAGGTCAACTTCCTCCCGGC 120
Query 121 CCACGGGGATGGCCAATCGTTGGGAACATGCTCCAAATGATCATCAACCGGCCGGCTCAC 180
|||||||||||||||||| |||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 121 CCACGGGGATGGCCAATCATTGGAAACATCCTCCAAATGATCATGAACCGACCGGCTCAC 180
Query 181 TTGTGGATCCACCGCGTCATGGAAGAACTGCAGACGGATATAGCTTGCTACCGCTTTGCC 240
|||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 181 TTGTGGATCCACCGTGTCATGGAAGAACTGCAAACGGAGATAGCTTGCTTCCGCTTTGCC 240
Query 241 CGTTTCCATGTCATCACCGTGACCTCAAGCAAGATTGCCCGTGAAGTGCTTAGGGAAAAG 300
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AGTTTCCACGTCATCACCGTAACCTCAAGCGAGATTGCCCGTGAAGTGCTTAGGGAAAAA 300
Query 301 GATGAGGTTCTCGCAGATAGGTCAGAGTCATACGCGAGCCATCTCATAAGCCATGGCTAT 360
|| |||||||| ||||| ||||||||||| ||||| ||| ||||||||||| ||||||||
Sbjct 301 GACGAGGTTCTTGCAGACAGGTCAGAGTCTTACGCCAGCTATCTCATAAGCAATGGCTAT 360
Query 361 AAGAACATTTCTTTCTCTTCCTACGGAGAGAACTGGAAGCTGGTAAAGAAAGTGATGACC 420
||| |||| ||||| |||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 361 AAGGGCATTACTTTCACTTCCTACGGAGAGAACTGGAAGCTGATGAAGAAATTGATGACC 420
Query 421 ACCAAACTTATGTCCCCGACAACATTGAGCAAAACCCTCGGTTATAGAAACATAGAAGCG 480
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ACCAAGCTTATGTCCCCGACAACATTGAGCAAAACCCTCGGTTACAGAAACATAGAAGCG 480
Query 481 GATAATATCGTCACATATGTCTACAATCTATGCCAACTAGGGTCAGTGAGGAAGCCTATT 540
|||||||| ||||||||||||||||||||||||| || | ||||| |||||| |||
Sbjct 481 GATAATATTGTCACATATGTCTACAATCTATGCCGAC-----T-AGTGACGAAGCCGATT 534
Query 541 AACGTGAGAGATACGATATTAACTTATTGCCACGCCGTGATGATGAGGATGATGTTTGGT 600
|||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 AACGTGAGGGATACGATCTTAACTTATTCCCACGCCGTGATGATGAGGATGATGTTTGGC 594
Query 601 CAGAGGCATTTTGATGAAG-TGGTAGAGAACGGCGGTCTCGGGCCAAAAGAGAAAGAGCA 659
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 595 CAGAGGCATTTTGATGAAGCT-GTAGAGATCGGCGGTCTCGGGCCAAAAGAGAAAGAGCA 653
Query 660 TATGGACGCAATATACCTTGCTCTTGATTGTTTTTTCAGCTTTAACTTAACGAATTACAT 719
|||||||||||||||||| ||||||||||| ||||||||||| |||||| | ||||||||
Sbjct 654 TATGGACGCAATATACCTAGCTCTTGATTGCTTTTTCAGCTTCAACTTAGCAAATTACAT 713
Query 720 CCCTTTTCTTAGAGGATGGAACGTAGATAAAGCGGAGACA-GAAGTAAGAGAAGCGGTTC 778
|||||||||||| || |||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 714 CCCTTTTCTTAGTGGGTGGAACGTAGATAAAGAGGAGA-AGGAGGTAAGAGAAGCGGTTC 772
Query 779 ATATAATCAATATATGTAATGACCCCATCATCCAAGAAAGAATACATTTATGGAGGAAGA 838
|||||||||| | |||||| ||||| |||||||||| ||||||| ||||||||||||||
Sbjct 773 ATATAATCAACAGATGTAACGACCCGATCATCCAAGCCAGAATACGTTTATGGAGGAAGA 832
Query 839 AAGGTGGAAAA-CAAATGGAAGAAGACTGGCTCGATATCCTTATCACGTTAAAAGATGAT 897
|||| |||||| | | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 833 AAGGCGGAAAAGC-TACGGAAGAAGACTGGCTCGATATCCTCATCACGTTAAAAGATGAT 891
Query 898 CAAGGAATGCATTTGTTCACATTTGATGAGATTAGGGCTCAATGCAAGGAAATCAATCTT 957
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 892 CAAGGAATGCATTTGTACACATTTGATCAGATTAGGGCTCAATGCAAGGAAATCAAT-TT 950
Query 958 -GCAACAATTGACAATACGATGAATAACGTGGAGTGGACGATCGCGGAGATGTTAAATCA 1016
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 951 AGCAACAATTGACAATATGATGAATAACGTGGAGTGGACGATAGCGGAGATGTTGAATCA 1010
Query 1017 CCCAGAGATTCTTGAGAAAGCCACAAATGAACTGGACATAATAGTTGGTAAAGACAGACT 1076
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 1011 CCCAGAGATTCTTGAGAAAGCCACAAATGAATTGGACATGATAGTTGGGAAAGACAGACT 1070
Query 1077 TGTGCAAGAATCAGACATATCACAACTCAACTACATCAAAGCATGTAGCAAAGAATCTTT 1136
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 1071 TGTGCAAGAATCAGACATACCAAAACTCAACTACATCAAAGCTTGTAGCAAAGAATCTTT 1130
Query 1137 TCGGCTTCACCCAGCTAATGTGTTCATGCCCCATCATGTTGCAAGAGAAGATACTACCCT 1196
||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1131 TCGTCTTCACCCTGCTAATGTGTTCATGCCCCATCATGTAGCCCGAGAAGATACTACCCT 1190
Query 1197 CGCGGGTTATTTTGTCCCCAAAGGCAGTCAAATTCTTGTGAGTCGTTTGGGGCTTGGTCG 1256
||||||||| ||||| |||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 1191 CGCGGGTTACTTTGTTCCCAAAGGTAGTCAAATTCTTGTGAGCCGTGTGGGGCTTGGTCG 1250
Query 1257 GAATCCTAAAATATGGGACGAGCCTAACGCGTTCAAGCCAGAAAGATACCTTGATGGCCA 1316
|||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||
Sbjct 1251 GAATCCTAAAATATGGGACGAGCCTAACACGTTCAAGCCCGAAAGACACCTCGATGGCCA 1310
Query 1317 TGTCGAGAAGTCATTGGGCGTGACTTTGATGGAACCGGACATGC-GATTCGTTACATTCG 1375
||||||||| ||||||||||||||| ||||||||||||| |||| | |||||||||||||
Sbjct 1311 TGTCGAGAACTCATTGGGCGTGACTCTGATGGAACCGGAGATGCTG-TTCGTTACATTCG 1369
Query 1376 GCACCGGTCGGCGTAGCTGTCCGGGCACTAAGATTGGGACATCTATGACCATCATGTTGT 1435
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1370 GTACCGGTCGGCGTAGCTGCCCAGGCACTAAGATTGGGACATCTATGACCATCATGTTGT 1429
Query 1436 TAGCCAGGCTTATCCAAGGGTTCGAATGGACTCTCCCTATTGGTAAAAGTTC-AGTGGAG 1494
||||||||||| ||||||||||||||||||||||||||| |||||||| || ||| ||
Sbjct 1430 TAGCCAGGCTTCTCCAAGGGTTCGAATGGACTCTCCCTAATGGTAAAA-CTCAAGTCGAA 1488
Query 1495 CTCATTTCGGCGGAGAGTAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCT 1554
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CTCATTTCGGCGGAGAGCAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCT 1548
Query 1555 AGGTTGGCTCCAAGTTTATATCCGAAAATCCAGATCTA 1592
||||||||||||||||||||||||||||||||| ||||
Sbjct 1549 AGGTTGGCTCCAAGTTTATATCCGAAAATCCAGTTCTA 1586
> Ahg925222 jgi|Araly1|925222|scaffold_200783.1
Length=763
Score = 737 bits (399), Expect = 0.0
Identities = 509/561 (91%), Gaps = 12/561 (2%)
Strand=Plus/Plus
Query 611 TTGATGAAG-TGGTAGAGAACGGCGGTCTCGGGCCAAAAGAGAAAGAGCATATGGACGCA 669
||| ||||| | |||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 40 TTGGTGAAGCT-GTAGAGAATGGCGGTCTCGAGCAAAAAGAGAAAGAGCATATGGACGCA 98
Query 670 ATATACCTTGCTCTTGATTGTTTTTTCAGCTTTAACTTAACGAATTACATCCCTTTTCTT 729
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 99 ATATACCTAGCTCTTGATTGCTTTTTCAGCTTCAACTTAACAAATTACATCCCTTTTCTT 158
Query 730 AGAGGATGGAACGTAGATAAAGCGGAGACA-GAAGTAAGAGAAGCGGTTCATATAATCAA 788
|| || |||||||||||||||| ||||| | || ||||||||||||||||||||||||||
Sbjct 159 AGTGGGTGGAACGTAGATAAAGAGGAGA-AGGAGGTAAGAGAAGCGGTTCATATAATCAA 217
Query 789 TATATGTAATGACCCCATCATCCAAGAAAGAATACATTTATGGAGGAAGAAAGGTGGAAA 848
| |||||| ||||| |||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 218 CAGATGTAACGACCCGATCATCCAAGCCAGAATACGTTTATGGAGGAAGAAAGGCGGAAA 277
Query 849 A-CAAATGGAAGAAGACTGGCTCGATATCCTTATCACGTTAAAAGATGATCAAGGAATGC 907
| | | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 278 AGC-TACAGAAGAAGACTGGCTCGATATCCTCATCACGTCAAAAGATGATCAAGGAATGC 336
Query 908 ATTTGTTCACATTTGATGAGATTAGGGCTCAATGCAAGGAAATCAATCTT-GCAACAATT 966
|| ||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 337 ATCTGTACACATTTGATGAGATTAGGGCTCAATGCAAGGAAATCAAT-TTAGCAACAATT 395
Query 967 GACAATAC-GATGAATAACGTGGAGTGGACGATCGCGGAGATGT-TAAATCACCCAGAGA 1024
|||||| | |||||||||||||||||||||||| |||||||| | | || || ||||| |
Sbjct 396 GACAAT-CTGATGAATAACGTGGAGTGGACGATAGCGGAGAT-TCTGAACCATCCAGAAA 453
Query 1025 TTCTTGAGAAAGCCACAAATGAACTGGACATAATAGTTGGTAAAGACAGACTTGTGCAAG 1084
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 454 TTCTTGAGAAAGCCACAAATGAATTGGACATGATAGTTGGGAAAGACAGACTTGTGCAAG 513
Query 1085 AATCAGACATATCACAACTCAACTACATCAAAGCATGTAGCAAAGAATCTTTTCGGCTTC 1144
||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 514 AATCAGACATACCAAAACTCAACTACATCAAAGCTTGTAGCAGAGAATCTTTTCGGCTAC 573
Query 1145 ACCCAGCTAATGTGTTCATGC 1165
|||||||||||||||||||||
Sbjct 574 ACCCAGCTAATGTGTTCATGC 594
Score = 228 bits (123), Expect = 1e-58
Identities = 142/151 (94%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 1443 GCTTATCCAAGGGTTCGAATGGACTCTCCCTATTGGTAAAAGTTC-AGTGGAGCTCATTT 1501
|||| ||||||||||||||||||||||||||| |||||||| || ||| || |||||||
Sbjct 593 GCTTCTCCAAGGGTTCGAATGGACTCTCCCTAATGGTAAAA-CTCAAGTCGAACTCATTT 651
Query 1502 CGGCGGAGAGTAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCTAGGTTGG 1561
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CGGCGGAGAGCAACTTGTTTATGGCCAAGCCTCTACTCGCATGCGCGAAACCTAGGTTGG 711
Query 1562 CTCCAAGTTTATATCCGAAAATCCAGATCTA 1592
|||||||||||||||||||||||||| ||||
Sbjct 712 CTCCAAGTTTATATCCGAAAATCCAGTTCTA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5