BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58270.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907627 jgi|Araly1|907627|Al_scaffold_0002_708 1146 0.0
Ahg925221 jgi|Araly1|925221|scaffold_200782.1 499 2e-140
> Ahg907627 jgi|Araly1|907627|Al_scaffold_0002_708
Length=1107
Score = 1146 bits (620), Expect = 0.0
Identities = 883/1003 (88%), Gaps = 45/1003 (4%)
Strand=Plus/Plus
Query 29 ATGTATTCAGAGGAAAAGAAAAGCAGAAATTATGGTTCAATCTTTGTCTACTGCTTCTTC 88
|||| |||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 1 ATGTTTTCAGATGAAAAGAAAAGCAAAAATTATGGTTCAATCTTTTTGTACTGCTTCTTC 60
Query 89 TGTTTCGTACTCATTGTGGAGGTTGCAAGATTCGCAAAACCTTA-TATCAACCTTCAAAA 147
|||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 61 TGTTTCGTACTCATTGTGGAAGTTACAAGATTCGCAAAACCTTATTA-CAACCTTCAAAA 119
Query 148 CCTAATTGAGACGGAAGCAGTAGTAGAAGAAGGTTTCATGGCGGTGGGGA-ACTCAGGGA 206
|||||||||||| |||||||||||||||||||||||| ||||||| || | |||||||||
Sbjct 120 CCTAATTGAGACAGAAGCAGTAGTAGAAGAAGGTTTCTTGGCGGT-GGAAGACTCAGGGA 178
Query 207 ATCTTCCGTGTGGCTCGTCAAAACCTAGCTCTGCCTCTGTTCGT-GCTCATGATGAACAG 265
| ||||| ||| ||| || || | | ||||| |||||||| | | ||| ||| |||||
Sbjct 179 AACTTCCATGTCGCTTGTTAAGTCGTCCCTCTGTCTCTGTTCCTAG-TCAGGATCAACAG 237
Query 266 AAGCTCTCGCAAGCAGTAACAAC-AGATACGAGAACTCGTCCTCCAAATTCGTACTGCGT 324
|||||||||||||||||||| | ||| || |||||||||||||||||||| ||||| ||
Sbjct 238 AAGCTCTCGCAAGCAGTAAC-GCAAGAAACAAGAACTCGTCCTCCAAATTCATACTGTGT 296
Query 325 GAAGTTCCAGTCTTTTGTCACTATGGCAAAGCAGGTCAAAGAAAACGGTGGCAAGTATGA 384
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 297 GAAGTTCCAGTCTTTTATCACTATGGCAAAACAGGTCAAAGAAAATGGTGGCAAGTATGA 356
Query 385 GTCACGTCCTTTCTCCGTCGGTGGATACAATTGGACGCTCCTAATCTACCCAGTCATATA 444
||||||||| |||||||| ||||||||||| | | | | | | |
Sbjct 357 GTCACGTCCATTCTCCGTTGGTGGATACAACT-G--G---------T----A--C----A 394
Query 445 CATTCCAACGGACTCGGGTGGGTACGTTTCGATTTACGTAAGAGTCGATAACTCAAGCCT 504
||||||| ||| ||||||||| ||| ||| ||||| ||||| ||||||||||||||||
Sbjct 395 CATTCCATCGGGCTCGGGTGGATAC--ATCGCTTTACTTAAGAATCGATAACTCAAGCCT 452
Query 505 CATCACCAATCCAAAAGATGTGTATGCAGAGATCACATTCCTCGCTTATAAAAGCAGTAC 564
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 453 CATCACCAATCCGAAAGATGTGTACGCAGATATCACATTCCTCGCTTATAAAAGCAGTAC 512
Query 565 AGACAAGTACCAAAT-A-AGCCAGGAGACTGAGGCCCAGCGATTTCATTTGTTTAAACAA 622
||||||||||| ||| | | ||| |||||||| || ||||||||||||||||||| ||||
Sbjct 513 AGACAAGTACC-AATCATA-CCAAGAGACTGATGCGCAGCGATTTCATTTGTTTAGACAA 570
Query 623 CAGTGGGGAC-TTTTACAATTTCTACCAATTTAC-TATTTTGAAAATCCGGCATATGGAT 680
|||||||||| | || ||||| || | || | |||||||||||||||| ||||||||
Sbjct 571 CAGTGGGGACAAATAAC-CTTTCTTCCGA-TTGCATATTTTGAAAATCCGGGATATGGAT 628
Query 681 ACTTTTTCGAGGGCGAAAGCGTTGTGTTTGGCGTTGACATCAACATTGTTAAACCCTTTG 740
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 ACTCTTTCGAGGGCGGAAGCGTTGTGTTTGGCGTTGACATCAACATTGTTAAACCCTTTG 688
Query 741 AAAATTGGGAAGTGTTCTCTAATGAACAAAACATTCGTGACCCTATTTTCGAATGGAGAC 800
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 689 AAAATTGGGAAGTTTTCTCTAACGAACAAAACATTCGTGACCCTATTTTCGAATGGAGAC 748
Query 801 TCACCAAATTCTCTACACGT-TTTCTTGACTCTTACACTTCTGATTCCTTTTCTTCCGGA 859
|||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||
Sbjct 749 TCACCAAATTCTCTACAC-TCTTTAAAGACTCTTACACTTCTGGTTCCTTTTCTTCCGGA 807
Query 860 GGAAGAAACTGGGCATTGAAAGTGTATCCAAATGGAGTTGGAAATGCTACGGGTAATTCG 919
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 808 GGAAGAAACTGGGCATTGAAATTGTATCCAAATGGAGTTGGAAATGCAACGGGTAATTCG 867
Query 920 TTGTCACTCTATTTGTTGAGTGATCAGTCAAATGATAAGGGTTATGTGGAAGCTAAGTTA 979
||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||
Sbjct 868 TTGTCACTCTATTTGTTGAATGA---GTCAAATGATAAGGGTTACGTGGAAGCCAAGTTA 924
Query 980 CGAGTTATTGACCAGATCCAATCCAACAATTTCGAGAAAAAAG 1022
| | |||||||||||| |||||||||| |||||| ||||||||
Sbjct 925 CAAATTATTGACCAGAACCAATCCAACCATTTCGTGAAAAAAG 967
> Ahg925221 jgi|Araly1|925221|scaffold_200782.1
Length=691
Score = 499 bits (270), Expect = 2e-140
Identities = 457/539 (85%), Gaps = 46/539 (9%)
Strand=Plus/Plus
Query 502 CCTCATCACCAATCCAAAAGATGTGTATGCAGAGATCACATTCCTCGCTTATAAAAGCAG 561
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1 CCTCATCACCAATCCGAAAGATGTGTACGCAGATATCACATTCCTCGCTTATAAAAGCAG 60
Query 562 TACAGACAAGTACCAA--AT---AAG--CCA-------G--GAGACTGAGGCCCAGCGAT 605
|||||||||||||||| || ||| | | ||||| || || |||||||
Sbjct 61 TACAGACAAGTACCAATCATACCAAGTTTGATTGGTTTGCAGAGACCGATGCGCAGCGAT 120
Query 606 TTCATTTGTTTAAACAACAGTGGGGACT-TTTACAATTTCTACCAATTTACTATTTTGA- 663
|||||||||||||||||||||||||||| || || ||||| || || | |||||| |
Sbjct 121 TTCATTTGTTTAAACAACAGTGGGGACTATTAAC-TTTTCTTCCGCTTGAATATTTT-AG 178
Query 664 AAATCCGGCATATGGATACTTTTTCGAGGGCGAAAGCGTTGTGTTTGGCGTTGACATCAA 723
|||||||| ||||||||||| |||||| | || |||||||||||||||||||||||||||
Sbjct 179 AAATCCGGGATATGGATACTCTTTCGACGACGGAAGCGTTGTGTTTGGCGTTGACATCAA 238
Query 724 CATTGTTAAACCCTTTGAAAATTGGGAAGTGTTCTCTAATGAACAAAACATTCGTGACCC 783
| | ||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 239 C--------A--CTTTGAAAAATGGGAAGTTTTCTCTAACGAACAAAACATTCGTGACCC 288
Query 784 TATTTTCGAATGGAGACTCACCAAATTCTCTACACGT-TTTCTTGACTCTTACACTTCTG 842
||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 289 TATTTTCGAATGGAGGCTCACCAAATTCTCTACAC-TCTTTCATGACTCTTACACTTCTG 347
Query 843 ATTCCTTTTCTTCCGGAGGAAGAAACTGGGCATTGAAAGTGTATCCAAATGGAGTTGGAA 902
||| |||||||||||| ||||||||||| | | | ||||||||||||||||||
Sbjct 348 ATTACTTTTCTTCCGGTGGAAGAAACTG----T-G----T--ATCCAAATGGAGTTGGAA 396
Query 903 ATGCTACGGGTAATTCGTTGTCACTCTATTTGTTGAGTGATCAGTCAAATGATAAGGGTT 962
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 397 ATGCAACGGGTAATTCGTTGTCACTCTATTTGTTGAATGA---GTCAAATGATAAGGGTT 453
Query 963 ATGTGGAAGCTAAGTTACGAGTTATTGACCAGATCCAATCCAACAATTTCGAGAAAAAA 1021
| |||||||| ||||||| | |||||||||||| |||||||||| |||||| |||||||
Sbjct 454 ACGTGGAAGCCAAGTTACAAATTATTGACCAGAACCAATCCAACCATTTCGTGAAAAAA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5