BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58270.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg907627 jgi|Araly1|907627|Al_scaffold_0002_708 1146 0.0 Ahg925221 jgi|Araly1|925221|scaffold_200782.1 499 2e-140 > Ahg907627 jgi|Araly1|907627|Al_scaffold_0002_708 Length=1107 Score = 1146 bits (620), Expect = 0.0 Identities = 883/1003 (88%), Gaps = 45/1003 (4%) Strand=Plus/Plus Query 29 ATGTATTCAGAGGAAAAGAAAAGCAGAAATTATGGTTCAATCTTTGTCTACTGCTTCTTC 88 |||| |||||| ||||||||||||| ||||||||||||||||||| | |||||||||||| Sbjct 1 ATGTTTTCAGATGAAAAGAAAAGCAAAAATTATGGTTCAATCTTTTTGTACTGCTTCTTC 60 Query 89 TGTTTCGTACTCATTGTGGAGGTTGCAAGATTCGCAAAACCTTA-TATCAACCTTCAAAA 147 |||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| Sbjct 61 TGTTTCGTACTCATTGTGGAAGTTACAAGATTCGCAAAACCTTATTA-CAACCTTCAAAA 119 Query 148 CCTAATTGAGACGGAAGCAGTAGTAGAAGAAGGTTTCATGGCGGTGGGGA-ACTCAGGGA 206 |||||||||||| |||||||||||||||||||||||| ||||||| || | ||||||||| Sbjct 120 CCTAATTGAGACAGAAGCAGTAGTAGAAGAAGGTTTCTTGGCGGT-GGAAGACTCAGGGA 178 Query 207 ATCTTCCGTGTGGCTCGTCAAAACCTAGCTCTGCCTCTGTTCGT-GCTCATGATGAACAG 265 | ||||| ||| ||| || || | | ||||| |||||||| | | ||| ||| ||||| Sbjct 179 AACTTCCATGTCGCTTGTTAAGTCGTCCCTCTGTCTCTGTTCCTAG-TCAGGATCAACAG 237 Query 266 AAGCTCTCGCAAGCAGTAACAAC-AGATACGAGAACTCGTCCTCCAAATTCGTACTGCGT 324 |||||||||||||||||||| | ||| || |||||||||||||||||||| ||||| || Sbjct 238 AAGCTCTCGCAAGCAGTAAC-GCAAGAAACAAGAACTCGTCCTCCAAATTCATACTGTGT 296 Query 325 GAAGTTCCAGTCTTTTGTCACTATGGCAAAGCAGGTCAAAGAAAACGGTGGCAAGTATGA 384 |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| Sbjct 297 GAAGTTCCAGTCTTTTATCACTATGGCAAAACAGGTCAAAGAAAATGGTGGCAAGTATGA 356 Query 385 GTCACGTCCTTTCTCCGTCGGTGGATACAATTGGACGCTCCTAATCTACCCAGTCATATA 444 ||||||||| |||||||| ||||||||||| | | | | | | | Sbjct 357 GTCACGTCCATTCTCCGTTGGTGGATACAACT-G--G---------T----A--C----A 394 Query 445 CATTCCAACGGACTCGGGTGGGTACGTTTCGATTTACGTAAGAGTCGATAACTCAAGCCT 504 ||||||| ||| ||||||||| ||| ||| ||||| ||||| |||||||||||||||| Sbjct 395 CATTCCATCGGGCTCGGGTGGATAC--ATCGCTTTACTTAAGAATCGATAACTCAAGCCT 452 Query 505 CATCACCAATCCAAAAGATGTGTATGCAGAGATCACATTCCTCGCTTATAAAAGCAGTAC 564 |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 453 CATCACCAATCCGAAAGATGTGTACGCAGATATCACATTCCTCGCTTATAAAAGCAGTAC 512 Query 565 AGACAAGTACCAAAT-A-AGCCAGGAGACTGAGGCCCAGCGATTTCATTTGTTTAAACAA 622 ||||||||||| ||| | | ||| |||||||| || ||||||||||||||||||| |||| Sbjct 513 AGACAAGTACC-AATCATA-CCAAGAGACTGATGCGCAGCGATTTCATTTGTTTAGACAA 570 Query 623 CAGTGGGGAC-TTTTACAATTTCTACCAATTTAC-TATTTTGAAAATCCGGCATATGGAT 680 |||||||||| | || ||||| || | || | |||||||||||||||| |||||||| Sbjct 571 CAGTGGGGACAAATAAC-CTTTCTTCCGA-TTGCATATTTTGAAAATCCGGGATATGGAT 628 Query 681 ACTTTTTCGAGGGCGAAAGCGTTGTGTTTGGCGTTGACATCAACATTGTTAAACCCTTTG 740 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 ACTCTTTCGAGGGCGGAAGCGTTGTGTTTGGCGTTGACATCAACATTGTTAAACCCTTTG 688 Query 741 AAAATTGGGAAGTGTTCTCTAATGAACAAAACATTCGTGACCCTATTTTCGAATGGAGAC 800 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 689 AAAATTGGGAAGTTTTCTCTAACGAACAAAACATTCGTGACCCTATTTTCGAATGGAGAC 748 Query 801 TCACCAAATTCTCTACACGT-TTTCTTGACTCTTACACTTCTGATTCCTTTTCTTCCGGA 859 |||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||| Sbjct 749 TCACCAAATTCTCTACAC-TCTTTAAAGACTCTTACACTTCTGGTTCCTTTTCTTCCGGA 807 Query 860 GGAAGAAACTGGGCATTGAAAGTGTATCCAAATGGAGTTGGAAATGCTACGGGTAATTCG 919 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 808 GGAAGAAACTGGGCATTGAAATTGTATCCAAATGGAGTTGGAAATGCAACGGGTAATTCG 867 Query 920 TTGTCACTCTATTTGTTGAGTGATCAGTCAAATGATAAGGGTTATGTGGAAGCTAAGTTA 979 ||||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||| Sbjct 868 TTGTCACTCTATTTGTTGAATGA---GTCAAATGATAAGGGTTACGTGGAAGCCAAGTTA 924 Query 980 CGAGTTATTGACCAGATCCAATCCAACAATTTCGAGAAAAAAG 1022 | | |||||||||||| |||||||||| |||||| |||||||| Sbjct 925 CAAATTATTGACCAGAACCAATCCAACCATTTCGTGAAAAAAG 967 > Ahg925221 jgi|Araly1|925221|scaffold_200782.1 Length=691 Score = 499 bits (270), Expect = 2e-140 Identities = 457/539 (85%), Gaps = 46/539 (9%) Strand=Plus/Plus Query 502 CCTCATCACCAATCCAAAAGATGTGTATGCAGAGATCACATTCCTCGCTTATAAAAGCAG 561 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1 CCTCATCACCAATCCGAAAGATGTGTACGCAGATATCACATTCCTCGCTTATAAAAGCAG 60 Query 562 TACAGACAAGTACCAA--AT---AAG--CCA-------G--GAGACTGAGGCCCAGCGAT 605 |||||||||||||||| || ||| | | ||||| || || ||||||| Sbjct 61 TACAGACAAGTACCAATCATACCAAGTTTGATTGGTTTGCAGAGACCGATGCGCAGCGAT 120 Query 606 TTCATTTGTTTAAACAACAGTGGGGACT-TTTACAATTTCTACCAATTTACTATTTTGA- 663 |||||||||||||||||||||||||||| || || ||||| || || | |||||| | Sbjct 121 TTCATTTGTTTAAACAACAGTGGGGACTATTAAC-TTTTCTTCCGCTTGAATATTTT-AG 178 Query 664 AAATCCGGCATATGGATACTTTTTCGAGGGCGAAAGCGTTGTGTTTGGCGTTGACATCAA 723 |||||||| ||||||||||| |||||| | || ||||||||||||||||||||||||||| Sbjct 179 AAATCCGGGATATGGATACTCTTTCGACGACGGAAGCGTTGTGTTTGGCGTTGACATCAA 238 Query 724 CATTGTTAAACCCTTTGAAAATTGGGAAGTGTTCTCTAATGAACAAAACATTCGTGACCC 783 | | ||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 239 C--------A--CTTTGAAAAATGGGAAGTTTTCTCTAACGAACAAAACATTCGTGACCC 288 Query 784 TATTTTCGAATGGAGACTCACCAAATTCTCTACACGT-TTTCTTGACTCTTACACTTCTG 842 ||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 289 TATTTTCGAATGGAGGCTCACCAAATTCTCTACAC-TCTTTCATGACTCTTACACTTCTG 347 Query 843 ATTCCTTTTCTTCCGGAGGAAGAAACTGGGCATTGAAAGTGTATCCAAATGGAGTTGGAA 902 ||| |||||||||||| ||||||||||| | | | |||||||||||||||||| Sbjct 348 ATTACTTTTCTTCCGGTGGAAGAAACTG----T-G----T--ATCCAAATGGAGTTGGAA 396 Query 903 ATGCTACGGGTAATTCGTTGTCACTCTATTTGTTGAGTGATCAGTCAAATGATAAGGGTT 962 |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 397 ATGCAACGGGTAATTCGTTGTCACTCTATTTGTTGAATGA---GTCAAATGATAAGGGTT 453 Query 963 ATGTGGAAGCTAAGTTACGAGTTATTGACCAGATCCAATCCAACAATTTCGAGAAAAAA 1021 | |||||||| ||||||| | |||||||||||| |||||||||| |||||| ||||||| Sbjct 454 ACGTGGAAGCCAAGTTACAAATTATTGACCAGAACCAATCCAACCATTTCGTGAAAAAA 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5