BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58280.2
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907635 jgi|Araly1|907635|Al_scaffold_0002_716 1437 0.0
Ahg907634 jgi|Araly1|907634|Al_scaffold_0002_715 289 4e-77
> Ahg907635 jgi|Araly1|907635|Al_scaffold_0002_716
Length=1032
Score = 1437 bits (778), Expect = 0.0
Identities = 947/1027 (92%), Gaps = 18/1027 (2%)
Strand=Plus/Plus
Query 52 ATGATTCACCAATCAATGACCTCAAATCTTTCATTTTACATTTCTTCTGTGTCTCATCTT 111
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 1 ATGAGTCACCAATCAATGACCTCAAATCTTTCATTTTACATTTCCTCTGTTTCTCCTCTT 60
Query 112 TCCTCTCCTCTTCCATCGCTTAGTCGCCTCTCTCTTCGTTGTTGCAGCTCTCTTCCTGCT 171
|||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 TCCTCTCCTCTTCCATCGATTCGTCGCCTCTCTCTCCGTTGTTGCAGCTCTCTTCCTTCT 120
Query 172 CACGATATGGAGACAAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATA 231
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACGATATGGAGGCTAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATA 180
Query 232 CATCTGGTGAGACATGCTCAAGG-GATTCACAATGTTGAAGGAGAGAAGAACCATAAGGC 290
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 181 CATCTGGTGAGACATGCTCAAGGAG-TTCACAATGTTGAAGGAGAGAAGAACCATGAGGC 239
Query 291 TTACTTATCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGA 350
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TTACTTATCTGAGGATCTCTTTGATGCACATCTTACCCCTCTTGGATGGCAACAAGTTGA 299
Query 351 TAATTTACACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGT 410
|||||||| |||||||||||| |||||||| |||||||||||||||||||| || || ||
Sbjct 300 TAATTTACTCAAGCATGTTAAGGCAAGTGGGATTTCCAATAGAATTGAGTTAGTCGTTGT 359
Query 411 ATCTCCTCTGCTCAGGACTTTGCAAACAGCGGTCGGAACTTTTGGT-GGGGAAGGTTACA 469
|| ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 360 GTCGCCTCTGCTCAGGACTTTGCAAACTGCGGTCGGAACTTTTG-TCGGGGAAGGTTACA 418
Query 470 AAGATGGTGTAAATACACCTCTGCTTATGACCGCAGGTGCTGGAAACAGCGATCGTCCTG 529
||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 419 AAGATGGCCTTAATGCACCTCTGCTTATGACCTCAGGTGCGGGAAACAGCGATCGTCCTG 478
Query 530 CTATATCAAGGTTAAATCGTCCACCGTTCATTGCGGTTGAATCCTGCCGAGAACATTTGG 589
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 CTATATCAAGCTTAAATTGTCCACCGTTCATTGCGGTTGAATCCTGTCGAGAACATTTGG 538
Query 590 TATGTTTACTTTTCTACCTTTTGCATGATTGGCATTTTCTTGAGATGAAAACTTTT--GC 647
||||||||||| || ||||||||||| |||||||||| ||| ||| | || ||||| |
Sbjct 539 TATGTTTACTTATCCACCTTTTGCATAATTGGCATTTGCTTAAGA-GTAA-CTTTTTTGA 596
Query 648 AATGTTCTTG-----G-TTCAGGGTGTTCATCCTTGTGACAGAAGAAGCAATATCACCAA 701
|||||||||| | ||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 597 AATGTTCTTGTTTTTGGTTCAGGGTGTTCATCCTTGTGACCGAAGACGTAATATCACCAA 656
Query 702 GTACCGCGAATTATTCCCTGCGATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTT 761
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTACCGCGAAATGTTCCCTGCAATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTT 716
Query 762 GTGGAAGCCTGACATTAGAGAGGAGGATAAAGATATTGCGACCAGAGGCGTGAAGTTCTT 821
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 717 GTGGAAGCCTGACATTAGAGAGGAGGACCAAGATATTGCGGCCAGAGGCGTGAAGTTCTT 776
Query 822 TAACTGGTTGAGTACAAGGAAAGAAAAAGAGATTGCGGTTGTAACTCATAGTGGGTTCTT 881
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 777 TAACTGGTTGAGTACAAGGAAAGAAAAGGAGATTGCGGTTGTTACTCATAGTGGGTTCTT 836
Query 882 GTATCAAACATTAAACTCATTTGGAAACGATTGTGATCCATCTGTGAAAAACGAGATTTC 941
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 GTATCATACATTAAACTCATTTGGAAACGATTGTGATCCATCTACGAAAAACGAGATTTC 896
Query 942 TAAAAAATTTGTCAACTGTGAACTCCGTTCATTTGTTCTTGTAGATAAATGCATGAGCAG 1001
| |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 897 TTCAAAATTTGCCAACTGTGAACTCCGTTCGGTTGTTCTTGTAGATAAATGCATGAACAG 956
Query 1002 TTCGGATCCTCCAATGACCAACTATCCCGGAA-CAATACTTACCGGAGAAGATGCTTC-T 1059
||||||||||||| ||| |||||||||||||| || ||| | ||||||||||| |||| |
Sbjct 957 TTCGGATCCTCCAGTGAACAACTATCCCGGAAACA-TACCTGCCGGAGAAGAT-CTTCCT 1014
Query 1060 AGTGATA 1066
|||||||
Sbjct 1015 AGTGATA 1021
> Ahg907634 jgi|Araly1|907634|Al_scaffold_0002_715
Length=192
Score = 289 bits (156), Expect = 4e-77
Identities = 178/189 (94%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 238 GTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACCATAAGGCTTACTTA 297
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1 GTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACAATGAGGCTTACTTA 60
Query 298 TCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTA 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGAGGATCTCTTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTA 120
Query 358 CACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGTATCTCCT 417
|||||||||||||| |||||||| |||| ||||||||||||||| || || || || |||
Sbjct 121 CACAAGCATGTTAAGGCAAGTGGAATTTTCAATAGAATTGAGTTAGTCGTTGTGTCGCCT 180
Query 418 CTGCTCAGG 426
|||||||||
Sbjct 181 CTGCTCAGG 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5