BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58290.1
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475445 jgi|Araly1|475445|fgenesh2_kg.2__575__AT1G58290.1 3206 0.0
Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 1192 0.0
Ahg933667 jgi|Araly1|933667|scaffold_401655.1 852 0.0
> Ahg475445 jgi|Araly1|475445|fgenesh2_kg.2__575__AT1G58290.1
Length=2047
Score = 3206 bits (1736), Expect = 0.0
Identities = 1973/2081 (95%), Gaps = 41/2081 (2%)
Strand=Plus/Plus
Query 1 AGCCTCAAATCTGACAAATCAT-ATTCACAGCGA--TCTCCTTCTTCCACATCGCAACCC 57
|||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 1 AGCCTCAAATCTGACAAATCATCA-TCACAACGATCTCTCCTTCTTCCACATCGCAACCC 59
Query 58 AATCCCTCTCTGTCTCTTCCTCAATTCTTATTCTCTCTCGCAAAGGTTTGGTTTTTTGAA 117
|||||||||||| || | | ||| || | |||||||| ||| |||||||||||||| |
Sbjct 60 AATCCCTCTCTG--TC-T-C-GAATCCTGA-TCTCTCTCTCAAGGGTTTGGTTTTTTGGA 113
Query 118 GAC--AGAGAGGAGATTTGAGATTTTGGGTTTCAATGGCGGTTTCAAGTGCTTTCGTTGG 175
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 114 GACAAAGAGAGGAGATTTGAGA-TTTGGGTTTCAATGGCGGTTTCAAGTGCTTTCGTTGG 172
Query 176 TTGTCCAAAGCTTGAGACTTTATTGAATCACCATAATCTATCTCCTTCTTCTTCTTCTTC 235
||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |
Sbjct 173 TTGTCCAAAGCTTGAGACTTTATTGAATCACCATAATCTATCT-C--CTTCTTC-TC--C 226
Query 236 GTCCTCTGTTTCACAGACACCATTGGGTCTTAATGGGGTTCGTGTTCTTCCGAAGAACAA 295
|||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 227 GTCCTCTGTTTCACAGACACCATTGGGTCTTAATGGGGTTCGTG----T----------- 271
Query 296 TAGAACCAGACGAGGTTTGATCCAAAAAGCTCGTTGTGAGCTCTCTGCTTCTTCTGATTC 355
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 272 TAGAACCAGACGAGGTTTGATCCAAAAAGCTCGTTGTGAGCTCTCTG---CTTCTGATTC 328
Query 356 TGCGTCTAATGCAGCTAGCATCTCTGCTCTTGAACAACTCAAGAACTCTGCAGCTGATCG 415
||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 329 TGCTTCTAATGCTGCAAGCATCTCTGCTCTTGAACAACTCAAGAACTCTGCAACTGATAG 388
Query 416 ATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGT 448
Query 476 TGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCTGAATT 535
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 449 TGAGATGCGTGAGAAGCTTGCTATACCAGAAGCTGAATGGCCAAGAGCTATTGCTGAATT 508
Query 536 GTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATGGAGAT 595
||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 509 GTGCGGTTTGAATCATATCGAAGAAGCTGCGGTGCTTAGTACTTGTAATCGTATGGAGAT 568
Query 596 TTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTTACTGAATGGATGTCAAA 655
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 569 TTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTGACTGAGTGGATGTCAAA 628
Query 656 GACGAGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAACAAGGA 715
||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 629 GACGAGTGGGATCCCTGTTTCGGAGATTTGTGAGCACCGTTTTCTGTTGTACAACAAGGA 688
Query 716 TGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGG 748
Query 776 TCAGATCCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGGCTTTGG 835
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 749 TCAGATTCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGCCAAGGAGTGAATGGCTTTGG 808
Query 836 GAGGAATATCAGCGGGCTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGA 895
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GAGGAATATCAGCGGGTTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGA 868
Query 896 GACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGAT 955
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GACAAACATTGCTTCTGGGGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGAT 928
Query 956 GAAGCTTCCGCAGTCTTCAAACGTATCTGCTAGGATGTGTGTAATTGGCGCTGGAAAAAT 1015
|||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 929 GAAGCTTCCGCAATCTTCACACGCATCTGCTAGGATGTGTGTAATTGGCGCTGGAAAAAT 988
Query 1016 GGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCACAAAAGTGGTGGTAGTCAA 1075
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 989 GGGGAAGCTTGTGATTAAGCATATGATGGCTAAGGGTTGCACAAAAGTGGTGGTGGTCAA 1048
Query 1076 CAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGATGCCTGGTATTGAGATTATATA 1135
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1049 CAGAAGTGAAGAGAGAGTTTCAGCTATTCGTGAGGAGATGCCGGGTATTGAGATTATATA 1108
Query 1136 TCGACCTCTTGATGAGATGCTAGCTTGTGCTTCAGAAGCGGATGTTGTGTTTACCAGCAC 1195
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1109 TCGACCTCTTGATGAGATGCTAGCTTGTGCTGCAGAAGCGGATGTTGTGTTTACCAGCAC 1168
Query 1196 AGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAATCTCCCTCAAGCTTCTCC 1255
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1169 AGCTTCTGAGACGCCATTGTTCTTAAAGGAGCATGTGGAGACTCTCCCTCAAGCTTCTCC 1228
Query 1256 AGAGGTTGGAGGACTGAGGCATTTTGTTGACATCTCTGTTCCGAGAAATGTTGGATCTTG 1315
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1229 AGAGGTTGGAGGACTGAGGCTTTTTGTTGACATCTCTGTTCCGAGAAATGTCGGATCTTG 1288
Query 1316 TGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGACGATCTCAAAGAAGTTGTTGC 1375
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TGTTGGTGAAGTAGAAACCGCGCGGGTTTACAATGTGGACGATCTCAAAGAAGTTGTTGC 1348
Query 1376 TGCCAACAAAGAAGACAGGATGAGGAAAGCAATGGAAGCTCAAACCATAATCACAGAGGA 1435
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TGCCAACAAAGAAGACAGGTTGAGGAAAGCAATGGAAGCTCAAACCATAATCACAGAGGA 1408
Query 1436 ATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGATCAAGAAGTT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 ATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGATCAAGAAGTT 1468
Query 1496 AAGAGCTTATGCAGAGAGAATCAGAGTGGCAGAGCTCGAGAAGTGCATGTCCAAAATGGG 1555
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1469 AAGAGCTTATGCAGAGAGAATCAGAGTGGCAGAGCTAGAGAAGTGCATGTCCAAAATGGG 1528
Query 1556 AGATGATATCAACAAGAAAACAACGAGAGCGGTTGATGACTTAAGCCGAGGTATCGTGAA 1615
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1529 AGATGACATCAACAAGAAAACAACAAGAGCGGTTGATGACTTAAGCCGAGGTATTGTGAA 1588
Query 1616 CAGATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGAAGTGACAGTAGAACGCT 1675
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1589 CAGATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGGAGTGATAGTAGAACGCT 1648
Query 1676 GAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGGTCTTGAGAAAGACAT 1735
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1649 AAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGGGCTTGAGAAAGACAT 1708
Query 1736 TTTGGAGGAAAAGCTTAAGGCAATGGCGGAACAACAACAGAAGTAAAAGAGAAAAATAAG 1795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1709 TTTGGAGGAAAAGCTTAAGGCAATGGCGGAACAACAACAGAAGTAAAAGAGAAAAAGA-G 1767
Query 1796 AAGATGTTCATCTCTTTTGACA--TATAAGATTAGCTTCCCCACAAACTCTGAGTAAATT 1853
|||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1768 AAGATGTTCATCTCTTTTGACAGATATAAGATTAGCTTCCCCGCAAACTC-GAGTAAATT 1826
Query 1854 GCATAGATCCTATAGCGATGGATCTATTTGATTCATTTAATTTGTGTGCAAGAGACTAAC 1913
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 GCATAGATCCTATAGCTATGGATCTATTTGATTCATTTAATTTGTGTGCAAGAGACTAAC 1886
Query 1914 AATTCTATCGTCAAGTGTAAGTGTTGTGAAGCTATAAGCGAGCTTGTTGCATGTTTGTTG 1973
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 ATTTCTATTGTCAAGTGTAAGTGTTGTGAAGCTATAAGCGAGCTTGTTGCATGTTTGTTG 1946
Query 1974 CTTCATAGACTCGAGTGTAATGGTATTGGTCCCAGTATCGTTACATATATGTAATAATGT 2033
|||||||||||||||||| | |||||| ||| |||| |||||||||| |||||||||||
Sbjct 1947 CTTCATAGACTCGAGTGTTACAGTATTGATCCAAGTACCGTTACATATTTGTAATAATGT 2006
Query 2034 ATAAACTTTGGTTCTTGCAATATAGAGAAATGtttttttCT 2074
|||||||||||||| |||| |||||||||||||||||||||
Sbjct 2007 ATAAACTTTGGTTCATGCAGTATAGAGAAATGTTTTTTTCT 2047
> Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1
Length=2008
Score = 1192 bits (645), Expect = 0.0
Identities = 1152/1394 (83%), Gaps = 46/1394 (3%)
Strand=Plus/Plus
Query 353 TTCTGCGTCTAATGCAGCTAGCATCTCTGCTCTTGAACAACTCAAGAAC-TCTGC-AGCT 410
|||| ||||||| |||||||||||||| ||||| || || || ||| || ||||| | |
Sbjct 413 TTCTCCGTCTAAGGCAGCTAGCATCTCAGCTCTCGAGCAGCTTAAG-ACTTCTGCTA-TT 470
Query 411 GATCGATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCT 470
|| ||||| || |||||||||||||| ||| |||||||||| ||||| || |||||||||
Sbjct 471 GACCGATACACTAAGGAAAGAAGCAGCATTATTGTGATTGGGCTTAGCATCCACACAGCT 530
Query 471 CCTGTTGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCT 530
||||||||||||||||||||||||||||| || ||||||||||||||| |||| || |||
Sbjct 531 CCTGTTGAGATGCGTGAGAAGCTTGCTATTCCAGAAGCTGAATGGCCACGAGCGATCGCT 590
Query 531 GAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATG 590
|||||||||||||||||||||||||||||||||||||| || ||||| || ||||| |||
Sbjct 591 GAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTCCTCAGTACCTGCAACCGAATG 650
Query 591 GAGATTTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTTACTGAATGGATG 650
||||||||||| || ||| |||| |||||||||||||| |||||||||||||| ||||||
Sbjct 651 GAGATTTATGTCTTGGCTCTATCACAGCATCGTGGAGTCAAAGAAGTTACTGAGTGGATG 710
Query 651 TCAAAGACGAGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAAC 710
| ||||| ||||| ||||| ||||| || || ||||| || |||||||| |||||||||
Sbjct 711 GCTAAGACAAGTGGAATCCCGGTTTCCGAAATCTGTCAGCATCGTTTTCTATTGTACAAC 770
Query 711 AAGGATG-CTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGG 769
||||| | | ||||| |||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 771 AAGGACGTC-ACACAACATATATTTGAAGTCTCAGCTGGTCTAGACTCCCTTGTCATAGG 829
Query 770 AGAAGGTCAGATCCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGG 829
|||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 830 AGAAAATCAGATACTTGCACAGGTTAAACAAGTTGTGAAAGTAGGTCAAGGAGTCAATGG 889
Query 830 CTTTGGGAGGAATATCAGCGGGCTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAG 889
||||||||||| || || ||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 890 GTTTGGGAGGAACATTAGTGGGCTATTTAAACACGCAATCACAGTTGGGAAGCGTGTCAG 949
Query 890 AACAGAGACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGC 949
||||||||||||||| ||| |||| || ||||| |||||||| ||||| || ||||||||
Sbjct 950 AACAGAGACAAATATCGCTGCTGGGGCTGTTTCTGTTAGCTCGGCTGCAGTCGAACTTGC 1009
Query 950 TCTGATGAAGCTTCC-GCAGTCTTCAAACG--T-ATCTGCTAGGATGTGTG-TAATTGGC 1004
||| ||||| ||||| | | ||||| | | | |||||||||||||| || |||||||
Sbjct 1010 TCTCATGAAACTTCCCGAA-TCTTCTCATGCATCATCTGCTAGGATGT-TGGTAATTGGT 1067
Query 1005 GCTGGAAAAATGGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCAC-AAAAGT 1063
|||||||| ||||| |||||||| || ||||| ||| | ||||| |||||||| |||| |
Sbjct 1068 GCTGGAAAGATGGGAAAGCTTGTAATCAAGCACTTGGTTGCTAAAGGTTGCACCAAAA-T 1126
Query 1064 GGTGGTAGTCAA-CAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGATGCC-T--G 1119
|||||| || || | |||||||||||| ||| ||||||| || ||||||||||| | |
Sbjct 1127 GGTGGTTGTGAATC-GAAGTGAAGAGAAAGTTGCAGCTATTCGCGAGGAGATGCCATATG 1185
Query 1120 GTATTGAGATTATATATCGACCTCTTGATGAGATGCTAGCTTGTGCTTCAGAAGCGGATG 1179
|| |||||||||| ||| ||| ||||||||||||||| ||||||| | ||||| ||||
Sbjct 1186 GTGTTGAGATTATTTATAAACCCCTTGATGAGATGCTATCTTGTGCAGCTGAAGCCGATG 1245
Query 1180 TTGTGTTTACCAGCACAGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAATC 1239
| || ||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||| ||
Sbjct 1246 TAGTCTTTACTAGCACAGCTTCTGAGACACCATTATTCTTGAAGGAGCAAGTAGAGACTC 1305
Query 1240 TCCCTCAAGCTTCTCCAGAGGTTGGAGGACTGAGGCATTTTGTTGACATCTCTGTTCCGA 1299
|||||| | || |||| | ||| ||| | ||| ||||| ||||||||||| |
Sbjct 1306 TCCCTCCTG-TT----AGAGATACGAG-ACT----C-TTT-GTTGATATCTCTGTTCCTA 1353
Query 1300 GAAATGTTGGATCTTGTGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGACGATC 1359
||||||| || ||||| || | |||| |||| |||||||||| ||| ||||| || |
Sbjct 1354 GAAATGTCGGGTCTTGCGTCGCTGAAATAGATGGTGCACGGGTTTTCAACGTGGATGACC 1413
Query 1360 TCAAAGAAGTTGTTGCTGCCAA-CAAAGAAGACAGGATGAGGAAAGCAATGGAAGCTCAA 1418
|||| ||||| ||| |||| || ||| ||||||||| ||||||||||||||||||||||
Sbjct 1414 TCAAGGAAGTCGTTACTGCAAATCAA-GAAGACAGGGTGAGGAAAGCAATGGAAGCTCAG 1472
Query 1419 ACCATAATCACAGAGGAATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTT 1478
| ||||| ||||| ||||| | ||| |||||||||||||||||||| |||||||||||
Sbjct 1473 GCTATAATTACAGATGAATCGAAACACTTTGAAGCATGGAGGGATTCGCTGGAGACGGTT 1532
Query 1479 CCAACGATCAAGAAGTTAAGAGCTTATGCAGAGAGAATCAGAG-TGGCAGAGCTCGAGAA 1537
||||| |||||||| ||||| | ||| |||||||||| | || || ||||| | |||||
Sbjct 1533 CCAACAATCAAGAAATTAAGGGGATATACAGAGAGAATTATAGCTG-CAGAGATTGAGAA 1591
Query 1538 GTGCATGTCCAAAAT-GGGAGAT-GATATCAACAAGAAAACAACGAGAG-CGGTTGATGA 1594
| | || || |||| ||| || || || |||||||| | || | | || |||||
Sbjct 1592 ATTCTTG-CCGAAATCGGGC-ATTGAGATGAACAAGAAGTTGA-GAAAATCAGTAGATGA 1648
Query 1595 -CTTAAGCCGAGGTATCGTGAACA-GATTCTTACATGGTCCAATGCAGCATTTGAGATGT 1652
|| || ||||||||| ||||||| | | || || |||||||||||||||||||||||
Sbjct 1649 TCT-AATCCGAGGTATAGTGAACAAGCTCCTG-CACGGTCCAATGCAGCATTTGAGATGC 1706
Query 1653 GACGGAAGTGACAGTAGAACGCTGAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGA 1712
|| || || || || ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct 1707 GATGGGAGCGATAGCAGAACACTGAGTGAGACACTGGAGAACATGCAGGCTCTGAACAGG 1766
Query 1713 ATGTACGGTCTTGA 1726
||||| || |||||
Sbjct 1767 ATGTATGGACTTGA 1780
> Ahg933667 jgi|Araly1|933667|scaffold_401655.1
Length=1630
Score = 852 bits (461), Expect = 0.0
Identities = 1055/1334 (79%), Gaps = 71/1334 (5%)
Strand=Plus/Plus
Query 415 GATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAG-TATTCACACAGCTCCT 473
|||| |||| ||| |||||||| ||||| |||||||| ||||| || ||||| |||| ||
Sbjct 253 GATACACAAGGGAGAGAAGCAGCATTGTGGTGATTGGGCTTAGCTA-TCACAAAGCTACT 311
Query 474 GTTGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCTGAA 533
| |||||||||||||||||||| || |||||||||||||||||| |||||||| || |
Sbjct 312 CTAGAGATGCGTGAGAAGCTTGCCATTCCTGAAGCTGAATGGCCACGAGCTATTACTCAG 371
Query 534 TTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATGGAG 593
||||| | ||||||||| ||||||||||||||||| || ||||| || |||||||| |||
Sbjct 372 TTGTGCGCTTTGAATCACATTGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAG 431
Query 594 ATTTATGTTTTAGCT-TTATCTCAG-CATCGTGGAGTTAAAGAAGTTACTGAATGGATGT 651
|||||||||| ||| || |||| | || ||||| || |||||||| ||||| |||||||
Sbjct 432 ATTTATGTTTCCGCTCTT-TCTC-GCCACCGTGGTGTCAAAGAAGTCACTGACTGGATGT 489
Query 652 CAAAGACG-AGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAAC 710
| |||| | ||||| || |||||||| || || ||||| ||||| |||||||||||||||
Sbjct 490 CTAAGA-GAAGTGGAATTCCAGTTTCTGACATCTGTCATCACCGGTTTCTGTTGTACAAC 548
Query 711 AAGGATGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGA 770
|| || || ||||| ||| ||||| ||||||| |||||||| || ||||||||| |||||
Sbjct 549 AAAGACGCCACACAACATCTATTTCAAGTCTCCGCTGGTCTGGAATCTCTTGTCATAGGA 608
Query 771 GAAGGTCAGAT-CCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGG 829
||| |||||| | | ||||||| |||||||||| ||||| | || || | || ||
Sbjct 609 GAAAATCAGATACAAT-CACAGGTTAAACAAGTTGAGAAAG-TAGTTAAACA-ACAA-GG 664
Query 830 CTTTGGGAGGAATATCAGCGGGCTGTTT-AAACACGCGAT-AACTGTTGGTAAGCGTGTT 887
|||||||||| |||||| | ||| ||| ||| | || || || | ||| ||||||||
Sbjct 665 GTTTGGGAGGATTATCAGTGCGCTATTTGAAA-AGGCAATCAA-GGCTGGAAAGCGTGTC 722
Query 888 AGA-ACAGAGACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACT 946
||| | ||||||||| || || ||||| || ||||| |||||||| ||||| | |||||
Sbjct 723 AGAGA-AGAGACAAACATCGCGTCTGGGGCTGTTTCCGTTAGCTCTGCTGCCATCGAACT 781
Query 947 TGCTCTGA-TGAAGCTTCC-GCAGTCTTCAAACGTATCTGCTAGGATG-TGTGTAATTGG 1003
|||||| | | |||||||| | | || | | | |||||||| |||| || ||||||||
Sbjct 782 TGCTCTCACT-AAGCTTCCAGGA-TC-TGTATC--ATCTGCTATGATGTTG-GTAATTGG 835
Query 1004 CGCTGGAAAAATGGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCAC-AAAAG 1062
|| |||| |||||||||||||| || ||||| || | ||||| |||||||| |||
Sbjct 836 TGCAGGAACGATGGGGAAGCTTGTAATCAAGCACCTGGTTGCTAAAGGTTGCACTGAAA- 894
Query 1063 TGGTGG-TAGTCAACAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGAT---GCCT 1118
|||||| || | ||| |||| |||||| ||| |||||||||| ||| |||| ||||
Sbjct 895 TGGTGGTTA-TGAACCGAAGCCAAGAGAAAGTTGCAGCTATCCGCGAGAAGATGCCGCCT 953
Query 1119 GGTATTGAGATTATATATCGACCTCTT-GATGAGATGCTAGCTTGTGCTTCAGAAGCGGA 1177
|| || ||||||| ||| |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 954 GGCGTTAAGATTATCTATAGACC-CTTAGATGAGATGCTAGCTTGTGCTTCAGAAGCCAA 1012
Query 1178 TGTTGTGTTTACCAGCACAGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAA 1237
|| | ||||| |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct 1013 CGTAATCTTTACTAGCACAGCATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGA- 1071
Query 1238 TC-TCCCTCAA-GCTTCTCCAGAGGTTGGAGGACTGAGGCAT-TTTGTTGACATCTCTGT 1294
|| |||||| | | || |||| || | | | | ||||| | |||||||| ||||||||
Sbjct 1072 TCCTCCCTCCTTG-TCCTGCAGATGTAG-ATG-C-GAGGC-TCTTTGTTGATATCTCTGT 1126
Query 1295 TCCGAGAAATGTTGGATCTTGTGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGA 1354
||| ||||||||||| |||||||| | |||| |||| | |||||||||||||| |||||
Sbjct 1127 TCCTAGAAATGTTGGCTCTTGTGTAGCTGAATTAGACAGTGCACGGGTTTACAACGTGGA 1186
Query 1355 CGATCTCAAAGAAGTTGTTGCTGCCAACAAAGAAGACAGGATGAGGAAAGCAATGGAAGC 1414
|| ||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 1187 TGACCTCAAGGAAGTTGTTGCTGCCAATATGGAAGACAGGGCGAGGAAAGCAATGGAAGC 1246
Query 1415 TCAA-ACCATAATCACAGAGGAATCCACACAGTTTGAAGCATGGAGGGATTC-ATTGGAG 1472
|| | ||||| |||||||| || | | ||||||||| ||||||||||| || | |
Sbjct 1247 TCGGGAT-ATAATAACAGAGGAGTCAATAAAGTTTGAAGGGTGGAGGGATTCGAT-G-A- 1302
Query 1473 ACGGTTCCAACGATCAAGAAGTTAAGA-GCTTATGCAGAGAGAATCAGAG-TGGCAGA-G 1529
|| ||||||| |||||||| |||||| || | |||||| |||||||| || | | |
Sbjct 1303 -CGTTTCCAACAATCAAGAAATTAAGAAGCAAAA-CAGAGAAAATCAGAGCTG-CTGCTG 1359
Query 1530 CTCGAGAAGTGCATGTCCAAA-ATGGGAGATGATATCAACAAGAAAACAACGAGA-GCGG 1587
| || || | |||||| ||| |||| | | || || ||||||| || | | || || |
Sbjct 1360 TT-GAAAAATTCATGTCGAAATATGGCAAA-GACATGGACAAGAAGACGAGG-GAAGCAG 1416
Query 1588 TTGATGACT-TAAGCCGAG-GTATCGTGAACAG-ATTCTTACATGGTCCAATGCAGCATT 1644
| || || | ||| || || | || |||||||| || || || | |||||| | ||||
Sbjct 1417 TAGA-GAATGTAACCCTAGAG-ATAGTGAACAGGATCCTG-CACGACCCAATGAAACATT 1473
Query 1645 TGAGATGTGACGGAAGTGACAGTAGAACGCTG-AGCGAGACCCTTGAGAATATGCATGCT 1703
||||||| || || | ||| || |||| |||| | ||||| || ||||| ||||| |||
Sbjct 1474 TGAGATGCGATGGGACTGATAGCAGAATGCTGCAT-GAGACTCTAGAGAACATGCAGGCT 1532
Query 1704 TTGAACAGAATGTA 1717
|||||||||||||
Sbjct 1533 GTGAACAGAATGTA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78351633965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5