BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58300.1 Length=855 Score E Sequences producing significant alignments: (Bits) Value Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1 992 0.0 Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006 523 7e-148 Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1 494 5e-139 > Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1 Length=876 Score = 992 bits (537), Expect = 0.0 Identities = 616/655 (94%), Gaps = 2/655 (0%) Strand=Plus/Plus Query 199 AAGCCAGAAAGAAGGTATCCTCGAGAACCGAATGGGTTTGTGGAGGAGATGAGGTTCGTG 258 |||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||| Sbjct 223 AAGCCAGAGAGAAGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTG 282 Query 259 GTAATGAAAATTCACCCAAGAGATCAGGTAAAAGAAGGAAAAAGTGACTCCAACGATCTT 318 || |||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| |||| Sbjct 283 GTGATGAAAATGCACCCGAGAGATCAGGTAAAAGAAGGAAAAAATGAGTCCAACGGTCTT 342 Query 319 GTATCAACATGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGACAGTAAGCTT 378 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 343 GTATCAACTTGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGATAGTAAGCTT 402 Query 379 GTGTTTGAGACGCTTGAACGAATTATTAACGAATCTGCTATCCAAGCTTATGCCGGGCTC 438 |||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| Sbjct 403 GTGTTTGAGACGCTTGAACGGATTATTAACGAATCTACTCTCCAAGCTTATGCCGGGCTC 462 Query 439 AAAAACACGGGGTTGGAAAGGGCAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAA 498 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 463 AAAAACACAGGGTTGGAAAGGACAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAA 522 Query 499 CAAGGTTACGAGATTCCAGAGTCAATGGTTCCTGGTAAAGCATATTCTCAGTATTTAAAG 558 ||||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||| Sbjct 523 CAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTCAGCATTTAAAG 582 Query 559 AATATAGCAGAGAAAGATCCTCCAGCATTCATCTGTCACTTCTACAACAT-TAACTTTGC 617 |||||||||||||| ||||||| ||||||||| ||||||||||||||||| || |||||| Sbjct 583 AATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATCTA-CTTTGC 641 Query 618 ACATAGCGCTGGTGGTCGAATGATTGGGACAAAGGTAGCTGAGAAGATACTCGACAATAA 677 |||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 642 ACATAGTGCTGGTGGTCGAATGATTAGGACAAAGGTTGCTGAGAAGATACTCGACAATAA 701 Query 678 AGAACTCGAGTTCTACAAATGGGACGGCCAACTTTCCGAATTGTTGCAGAACGTGAGTGA 737 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 702 AGAACTCGAGTTCTACAAATGGGATGGCCAACTTTCCGAATTGTTGCAAAACGTGAGTGA 761 Query 738 AGAATTGAACAAAGTGGCTGAGTTGTGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGA 797 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 762 AGAATTGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGAATCATTGTTTGGCAGA 821 Query 798 GACAGAGAAATCGTTCAAGTTTTATTGGGAGATTTTTCGTTACTTATTGTCCTAA 852 |||||||| |||||||||||||||||||||||||||||||| |||| |||| ||| Sbjct 822 GACAGAGATATCGTTCAAGTTTTATTGGGAGATTTTTCGTTTCTTAATGTCATAA 876 Score = 217 bits (117), Expect = 1e-55 Identities = 160/179 (89%), Gaps = 10/179 (6%) Strand=Plus/Plus Query 1 ATGGCTACATCAAGACTTAATGCCTCTTGCCGCTTT-CCTGCAAGCAGAAGACTTGACTG 59 |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| Sbjct 1 ATGGCTACATCAAGACTTAATGCCTCTTTACGCTTTCCCT-CAAGCAGAAGACTTGACTG 59 Query 60 CGAGAGCTATGTCAGTCTGAGAGCTAAGACAGTGACAATAAGATATGTTCGGACCATAGC 119 ||||||||||||||||||||||||| ||| | | ||||||||| || |||||||| Sbjct 60 CGAGAGCTATGTCAGTCTGAGAGCT--GAC-G--A---TAAGATATGCCCGAACCATAGC 111 Query 120 CGCTCCTCGTCGCCATCTTGTCCGAAGAGCAAACGAAGATCAGACTTTGGTGGTGAATG 178 ||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 112 CGCTCCTTGTGGCCATCTTATCCGAAGAGCAAACGAAGATCGGACTTTGGTGGTGAATG 170 > Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006 Length=858 Score = 523 bits (283), Expect = 7e-148 Identities = 696/886 (79%), Gaps = 66/886 (7%) Strand=Plus/Plus Query 1 ATGGCTACATCAAGACTTAA-TGCCTCTTGCCGCTTTCC-TGCAAGCAGAAGACTTGACT 58 ||||||||| |||||||||| | | ||||||| |||||| | | |||| ||||||| | | Sbjct 1 ATGGCTACAACAAGACTTAACT-CTTCTTGCCACTTTCCAT-CGAGCACAAGACTTTATT 58 Query 59 GCGAGAGCTATGTCA-GTCTGAGAGCTAAGACAGTGACAATAAGATATGTTCGGACCATA 117 ||||||||| | | |||||||| | ||| | || || || |||| || ||| || Sbjct 59 TTGAGAGCTATCT-AGGTCTGAGA---ACGACCGCGAGGATTAGTTATGCACGAACCCTA 114 Query 118 GCCGCTCCTCGTCGCCATCTTGTCCG-AAGAGCAAACGAAGATC-AGACTTTGGTGGTGA 175 ||||||| ||| || |||||| | | || |||||||| | || || ||| ||||||| Sbjct 115 ACCGCTCCACGTGGCTATCTTG-CTGTAAAAGCAAACGGTGGTCAAG-CTTCGGTGGTG- 171 Query 176 ATGTTGTGGCAGC-AGCAGGGGAGAAGC--CAGAAAGAAGGTATCCTCGAGAACCGAATG 232 | || ||| || | | |||||||| || |||||| |||||| ||||| | || | Sbjct 172 A--CTGCGGCGGCTA-TAATGGAGAAGCAACA-AAAGAA-GTATCCAGGAGAATC-AAAG 225 Query 233 GG-TTTGTGGAGGAGATGAGGTTCGTGGTAATGAAAATT-CA-CCCAAGAGATCAGGTAA 289 || |||||||| ||||||||||| |||| |||| | ||| || | || |||||| | || Sbjct 226 GGTTTTGTGGAAGAGATGAGGTTTGTGGCAATG-AGATTGCATACGAA-AGATCAAGCAA 283 Query 290 AAGAA-G-GAAAAAG----T-GA-CTCCA-ACG-A--TCTTGTATC-AACAT-GGAATTT 335 ||| | ||||||| | | ||||| | | | || || | || || |||| Sbjct 284 GGGAAGGAGAAAAAGAATCTAAATCTCCAGAGGAAGGTCCGGTGGCGAA-ATGGGAA--C 340 Query 336 C-ACAATCGAAGGGTACTTGA-AGTTTCTCGTGGACAGTAAGCTTGTGTTT--GAGACGC 391 | || | ||||| ||||| | ||||||| ||||| |||||| ||| |||| || || | Sbjct 341 CAACGGTGGAAGGATACTT-ACAGTTTCTTGTGGATAGTAAG-TTG-GTTTACGACACAC 397 Query 392 TTGAACGAATTATTAACGAATCTGCTAT-CCAAGCTTATGCCGGGCTCAAAAACACGGGG 450 |||| | || || |||| || | | |||| |||||||||| |||| || ||||| Sbjct 398 TTGAGGGGATCATCGACGATTCCAATTTCCCAA-CTTATGCCGGTTTCAAGAATACGGGA 456 Query 451 TTGGAAAGGGCAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAG 510 |||||||| ||||||| |||| | | ||||||||| |||||||||||||||||||| || Sbjct 457 TTGGAAAGAGCAGAGAGTTTGCGGAAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAA 516 Query 511 ATTCCAGAGTCAATGGTTCCTGGTAAAGCATATTCTCAGTATTT-AAAGAATATAGCAGA 569 ||||||||| | |||| |||||||||| |||||||| ||||||| |||| || ||||||| Sbjct 517 ATTCCAGAGCCGATGGCTCCTGGTAAAACATATTCTGAGTATTTAAAAG-ATTTAGCAGA 575 Query 570 GAAAGATCCTCCAGCATTCATCTGTCACTTCTACAACATTAACTTTGCACATAGCGCTGG 629 ||| ||||||| ||||||||| |||||||||||||||||| ||||||| ||||| || || Sbjct 576 GAACGATCCTCAAGCATTCATTTGTCACTTCTACAACATTTACTTTGCTCATAGTGCCGG 635 Query 630 TGGTCGAATGATTGGGACAAAGGTAGCTGAGAAGATACTCGACAATAAAGAACTCGAGTT 689 ||| | ||||||||| || |||||| |||||||||||||||| |||||||||||||||| Sbjct 636 TGGCCAAATGATTGGAACTAAGGTATCTGAGAAGATACTCGATGATAAAGAACTCGAGTT 695 Query 690 CTACAAATGGGACGGCCAACTTTC-CGAATTGTTGCAGAACGTGAGTG-AAGAATTGAAC 747 ||| || |||||||| || ||||| | ||||||||||||| ||||| | || || ||||| Sbjct 696 CTATAATTGGGACGGTCATCTTTCTC-AATTGTTGCAGAATGTGAG-GCAAAAACTGAAC 753 Query 748 AAAGTGGCTGAGTTG-TGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAA 806 ||||| || ||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 754 AAAGTTGCAGAG-TGTTGGACAAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAA 812 Query 807 ATCGTTCAAGTTTTATTGGGAGATTTTTCGTTACTTAT-T-GTCCT 850 |||||||||||||| |||||||| ||||| ||||| | ||||| Sbjct 813 ATCGTTCAAGTTTTCCGGGGAGATTCTTCGT--CTTATATTGTCCT 856 > Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1 Length=1112 Score = 494 bits (267), Expect = 5e-139 Identities = 445/527 (84%), Gaps = 28/527 (5%) Strand=Plus/Plus Query 343 GAAGGGTACTTGAAGTTTCTCGTGGACAGTAAGCTT-GTGTT-TGAGACGCTTGAACGA- 399 ||||| ||||||| |||||| ||||||||||| || || || ||| || ||||||| | Sbjct 432 GAAGGTTACTTGAGGTTTCTTGTGGACAGTAA-ATTGGT-TTATGATACTCTTGAAC-AG 488 Query 400 ATTATT-AACGAATCTGCTAT-CCAAGCTTATGCCGGGCTCAAAAACACGGGGTTGGAAA 457 |||||| || || || | | | |||| ||||||||| |||| ||||||||| |||||| Sbjct 489 ATTATTCAA-GATTCCGATTTCCCAA-CTTATGCCGAATTCAAGAACACGGGGCTGGAAA 546 Query 458 GGGCAGAGAATTTGAG-TAGGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAGATTCCA 516 |||| ||||| ||| | | ||||||||||||||||||||||||||| |||||||||||| Sbjct 547 GGGCGGAGAAATTG-GCCACGGATTTGGAGTGGTTCAAGGAACAAGGCTACGAGATTCCA 605 Query 517 GAGTCAA-TGGTTCCTGGTAAAGCATATTCTCAGTATTTAA-AGAATATAGCAGAGAAAG 574 || ||| | | |||||||||| |||||||||||||||||| |||| |||||||||| | Sbjct 606 GAACCAACT-GCTCCTGGTAAAACATATTCTCAGTATTTAAGGGAAT-TAGCAGAGAAGG 663 Query 575 ATCCTCCAGCATTCATCTGTCACTTCTACAACAT-TAACTTTGCACATAGCGCTGGTGGT 633 |||||| ||||||||| ||||||||||||||||| | |||| || ||||| |||||||| Sbjct 664 ATCCTCAAGCATTCATTTGTCACTTCTACAACATCT-ACTTCGCCCATAGTGCTGGTGGA 722 Query 634 CGAATGATTGGGACAAAGGTAGCTGAGAAG-ATACTCGACAATAAAGAACTCGAGTTCTA 692 ||||||||||| | ||||||||||||| || ||||| ||||||| ||||||||||||||| Sbjct 723 CGAATGATTGGCAGAAAGGTAGCTGAG-AGAATACTTGACAATAGAGAACTCGAGTTCTA 781 Query 693 CAAATGGGACGGCCAACTTTCCGAATTGTTGCAGAACGTGAGTGAAGAAT-TGAACAAAG 751 ||||||||||||| |||| ||| |||||||||||||||| || || ||| ||||||||| Sbjct 782 CAAATGGGACGGCGAACTATCCCAATTGTTGCAGAACGTTAGGGA-GAAACTGAACAAAG 840 Query 752 TGGCTGAGTTGTGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGT 811 | || ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 841 TTGCCGAGGAGTGGACGAGAGAAGAAAAGAATCATTGTTTGGAAGAGACGGAGAAATCGT 900 Query 812 TCAAGTTTTATTGG-GAGATTTTTCGT-T-ACTTATTGTCCTAATTT 855 |||||| || | || || || ||||| | | | |||||||| |||| Sbjct 901 TCAAGTATTCT-GGTGAAATACTTCGTCTGA-T-ATTGTCCTGATTT 944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31642021110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5