BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58300.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1 992 0.0
Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006 523 7e-148
Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1 494 5e-139
> Ahg475446 jgi|Araly1|475446|fgenesh2_kg.2__576__AT1G58300.1
Length=876
Score = 992 bits (537), Expect = 0.0
Identities = 616/655 (94%), Gaps = 2/655 (0%)
Strand=Plus/Plus
Query 199 AAGCCAGAAAGAAGGTATCCTCGAGAACCGAATGGGTTTGTGGAGGAGATGAGGTTCGTG 258
|||||||| |||||||||||| |||| || || |||||||||||||||||||||||||||
Sbjct 223 AAGCCAGAGAGAAGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTG 282
Query 259 GTAATGAAAATTCACCCAAGAGATCAGGTAAAAGAAGGAAAAAGTGACTCCAACGATCTT 318
|| |||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 283 GTGATGAAAATGCACCCGAGAGATCAGGTAAAAGAAGGAAAAAATGAGTCCAACGGTCTT 342
Query 319 GTATCAACATGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGACAGTAAGCTT 378
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 343 GTATCAACTTGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGATAGTAAGCTT 402
Query 379 GTGTTTGAGACGCTTGAACGAATTATTAACGAATCTGCTATCCAAGCTTATGCCGGGCTC 438
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 403 GTGTTTGAGACGCTTGAACGGATTATTAACGAATCTACTCTCCAAGCTTATGCCGGGCTC 462
Query 439 AAAAACACGGGGTTGGAAAGGGCAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAA 498
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 463 AAAAACACAGGGTTGGAAAGGACAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAA 522
Query 499 CAAGGTTACGAGATTCCAGAGTCAATGGTTCCTGGTAAAGCATATTCTCAGTATTTAAAG 558
||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||
Sbjct 523 CAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTCAGCATTTAAAG 582
Query 559 AATATAGCAGAGAAAGATCCTCCAGCATTCATCTGTCACTTCTACAACAT-TAACTTTGC 617
|||||||||||||| ||||||| ||||||||| ||||||||||||||||| || ||||||
Sbjct 583 AATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATCTA-CTTTGC 641
Query 618 ACATAGCGCTGGTGGTCGAATGATTGGGACAAAGGTAGCTGAGAAGATACTCGACAATAA 677
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 642 ACATAGTGCTGGTGGTCGAATGATTAGGACAAAGGTTGCTGAGAAGATACTCGACAATAA 701
Query 678 AGAACTCGAGTTCTACAAATGGGACGGCCAACTTTCCGAATTGTTGCAGAACGTGAGTGA 737
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 702 AGAACTCGAGTTCTACAAATGGGATGGCCAACTTTCCGAATTGTTGCAAAACGTGAGTGA 761
Query 738 AGAATTGAACAAAGTGGCTGAGTTGTGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGA 797
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 762 AGAATTGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGAATCATTGTTTGGCAGA 821
Query 798 GACAGAGAAATCGTTCAAGTTTTATTGGGAGATTTTTCGTTACTTATTGTCCTAA 852
|||||||| |||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 822 GACAGAGATATCGTTCAAGTTTTATTGGGAGATTTTTCGTTTCTTAATGTCATAA 876
Score = 217 bits (117), Expect = 1e-55
Identities = 160/179 (89%), Gaps = 10/179 (6%)
Strand=Plus/Plus
Query 1 ATGGCTACATCAAGACTTAATGCCTCTTGCCGCTTT-CCTGCAAGCAGAAGACTTGACTG 59
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 1 ATGGCTACATCAAGACTTAATGCCTCTTTACGCTTTCCCT-CAAGCAGAAGACTTGACTG 59
Query 60 CGAGAGCTATGTCAGTCTGAGAGCTAAGACAGTGACAATAAGATATGTTCGGACCATAGC 119
||||||||||||||||||||||||| ||| | | ||||||||| || ||||||||
Sbjct 60 CGAGAGCTATGTCAGTCTGAGAGCT--GAC-G--A---TAAGATATGCCCGAACCATAGC 111
Query 120 CGCTCCTCGTCGCCATCTTGTCCGAAGAGCAAACGAAGATCAGACTTTGGTGGTGAATG 178
||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 112 CGCTCCTTGTGGCCATCTTATCCGAAGAGCAAACGAAGATCGGACTTTGGTGGTGAATG 170
> Ahg315973 jgi|Araly1|315973|fgenesh1_pm.C_scaffold_2001006
Length=858
Score = 523 bits (283), Expect = 7e-148
Identities = 696/886 (79%), Gaps = 66/886 (7%)
Strand=Plus/Plus
Query 1 ATGGCTACATCAAGACTTAA-TGCCTCTTGCCGCTTTCC-TGCAAGCAGAAGACTTGACT 58
||||||||| |||||||||| | | ||||||| |||||| | | |||| ||||||| | |
Sbjct 1 ATGGCTACAACAAGACTTAACT-CTTCTTGCCACTTTCCAT-CGAGCACAAGACTTTATT 58
Query 59 GCGAGAGCTATGTCA-GTCTGAGAGCTAAGACAGTGACAATAAGATATGTTCGGACCATA 117
||||||||| | | |||||||| | ||| | || || || |||| || ||| ||
Sbjct 59 TTGAGAGCTATCT-AGGTCTGAGA---ACGACCGCGAGGATTAGTTATGCACGAACCCTA 114
Query 118 GCCGCTCCTCGTCGCCATCTTGTCCG-AAGAGCAAACGAAGATC-AGACTTTGGTGGTGA 175
||||||| ||| || |||||| | | || |||||||| | || || ||| |||||||
Sbjct 115 ACCGCTCCACGTGGCTATCTTG-CTGTAAAAGCAAACGGTGGTCAAG-CTTCGGTGGTG- 171
Query 176 ATGTTGTGGCAGC-AGCAGGGGAGAAGC--CAGAAAGAAGGTATCCTCGAGAACCGAATG 232
| || ||| || | | |||||||| || |||||| |||||| ||||| | || |
Sbjct 172 A--CTGCGGCGGCTA-TAATGGAGAAGCAACA-AAAGAA-GTATCCAGGAGAATC-AAAG 225
Query 233 GG-TTTGTGGAGGAGATGAGGTTCGTGGTAATGAAAATT-CA-CCCAAGAGATCAGGTAA 289
|| |||||||| ||||||||||| |||| |||| | ||| || | || |||||| | ||
Sbjct 226 GGTTTTGTGGAAGAGATGAGGTTTGTGGCAATG-AGATTGCATACGAA-AGATCAAGCAA 283
Query 290 AAGAA-G-GAAAAAG----T-GA-CTCCA-ACG-A--TCTTGTATC-AACAT-GGAATTT 335
||| | ||||||| | | ||||| | | | || || | || || ||||
Sbjct 284 GGGAAGGAGAAAAAGAATCTAAATCTCCAGAGGAAGGTCCGGTGGCGAA-ATGGGAA--C 340
Query 336 C-ACAATCGAAGGGTACTTGA-AGTTTCTCGTGGACAGTAAGCTTGTGTTT--GAGACGC 391
| || | ||||| ||||| | ||||||| ||||| |||||| ||| |||| || || |
Sbjct 341 CAACGGTGGAAGGATACTT-ACAGTTTCTTGTGGATAGTAAG-TTG-GTTTACGACACAC 397
Query 392 TTGAACGAATTATTAACGAATCTGCTAT-CCAAGCTTATGCCGGGCTCAAAAACACGGGG 450
|||| | || || |||| || | | |||| |||||||||| |||| || |||||
Sbjct 398 TTGAGGGGATCATCGACGATTCCAATTTCCCAA-CTTATGCCGGTTTCAAGAATACGGGA 456
Query 451 TTGGAAAGGGCAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAG 510
|||||||| ||||||| |||| | | ||||||||| |||||||||||||||||||| ||
Sbjct 457 TTGGAAAGAGCAGAGAGTTTGCGGAAGGATTTGGAATGGTTCAAGGAACAAGGTTATGAA 516
Query 511 ATTCCAGAGTCAATGGTTCCTGGTAAAGCATATTCTCAGTATTT-AAAGAATATAGCAGA 569
||||||||| | |||| |||||||||| |||||||| ||||||| |||| || |||||||
Sbjct 517 ATTCCAGAGCCGATGGCTCCTGGTAAAACATATTCTGAGTATTTAAAAG-ATTTAGCAGA 575
Query 570 GAAAGATCCTCCAGCATTCATCTGTCACTTCTACAACATTAACTTTGCACATAGCGCTGG 629
||| ||||||| ||||||||| |||||||||||||||||| ||||||| ||||| || ||
Sbjct 576 GAACGATCCTCAAGCATTCATTTGTCACTTCTACAACATTTACTTTGCTCATAGTGCCGG 635
Query 630 TGGTCGAATGATTGGGACAAAGGTAGCTGAGAAGATACTCGACAATAAAGAACTCGAGTT 689
||| | ||||||||| || |||||| |||||||||||||||| ||||||||||||||||
Sbjct 636 TGGCCAAATGATTGGAACTAAGGTATCTGAGAAGATACTCGATGATAAAGAACTCGAGTT 695
Query 690 CTACAAATGGGACGGCCAACTTTC-CGAATTGTTGCAGAACGTGAGTG-AAGAATTGAAC 747
||| || |||||||| || ||||| | ||||||||||||| ||||| | || || |||||
Sbjct 696 CTATAATTGGGACGGTCATCTTTCTC-AATTGTTGCAGAATGTGAG-GCAAAAACTGAAC 753
Query 748 AAAGTGGCTGAGTTG-TGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAA 806
||||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 754 AAAGTTGCAGAG-TGTTGGACAAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAA 812
Query 807 ATCGTTCAAGTTTTATTGGGAGATTTTTCGTTACTTAT-T-GTCCT 850
|||||||||||||| |||||||| ||||| ||||| | |||||
Sbjct 813 ATCGTTCAAGTTTTCCGGGGAGATTCTTCGT--CTTATATTGTCCT 856
> Ahg481532 jgi|Araly1|481532|fgenesh2_kg.4__592__AT2G26670.1
Length=1112
Score = 494 bits (267), Expect = 5e-139
Identities = 445/527 (84%), Gaps = 28/527 (5%)
Strand=Plus/Plus
Query 343 GAAGGGTACTTGAAGTTTCTCGTGGACAGTAAGCTT-GTGTT-TGAGACGCTTGAACGA- 399
||||| ||||||| |||||| ||||||||||| || || || ||| || ||||||| |
Sbjct 432 GAAGGTTACTTGAGGTTTCTTGTGGACAGTAA-ATTGGT-TTATGATACTCTTGAAC-AG 488
Query 400 ATTATT-AACGAATCTGCTAT-CCAAGCTTATGCCGGGCTCAAAAACACGGGGTTGGAAA 457
|||||| || || || | | | |||| ||||||||| |||| ||||||||| ||||||
Sbjct 489 ATTATTCAA-GATTCCGATTTCCCAA-CTTATGCCGAATTCAAGAACACGGGGCTGGAAA 546
Query 458 GGGCAGAGAATTTGAG-TAGGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAGATTCCA 516
|||| ||||| ||| | | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 547 GGGCGGAGAAATTG-GCCACGGATTTGGAGTGGTTCAAGGAACAAGGCTACGAGATTCCA 605
Query 517 GAGTCAA-TGGTTCCTGGTAAAGCATATTCTCAGTATTTAA-AGAATATAGCAGAGAAAG 574
|| ||| | | |||||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct 606 GAACCAACT-GCTCCTGGTAAAACATATTCTCAGTATTTAAGGGAAT-TAGCAGAGAAGG 663
Query 575 ATCCTCCAGCATTCATCTGTCACTTCTACAACAT-TAACTTTGCACATAGCGCTGGTGGT 633
|||||| ||||||||| ||||||||||||||||| | |||| || ||||| ||||||||
Sbjct 664 ATCCTCAAGCATTCATTTGTCACTTCTACAACATCT-ACTTCGCCCATAGTGCTGGTGGA 722
Query 634 CGAATGATTGGGACAAAGGTAGCTGAGAAG-ATACTCGACAATAAAGAACTCGAGTTCTA 692
||||||||||| | ||||||||||||| || ||||| ||||||| |||||||||||||||
Sbjct 723 CGAATGATTGGCAGAAAGGTAGCTGAG-AGAATACTTGACAATAGAGAACTCGAGTTCTA 781
Query 693 CAAATGGGACGGCCAACTTTCCGAATTGTTGCAGAACGTGAGTGAAGAAT-TGAACAAAG 751
||||||||||||| |||| ||| |||||||||||||||| || || ||| |||||||||
Sbjct 782 CAAATGGGACGGCGAACTATCCCAATTGTTGCAGAACGTTAGGGA-GAAACTGAACAAAG 840
Query 752 TGGCTGAGTTGTGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGT 811
| || ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 841 TTGCCGAGGAGTGGACGAGAGAAGAAAAGAATCATTGTTTGGAAGAGACGGAGAAATCGT 900
Query 812 TCAAGTTTTATTGG-GAGATTTTTCGT-T-ACTTATTGTCCTAATTT 855
|||||| || | || || || ||||| | | | |||||||| ||||
Sbjct 901 TCAAGTATTCT-GGTGAAATACTTCGTCTGA-T-ATTGTCCTGATTT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5