BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58310.1 Length=1518 Score E Sequences producing significant alignments: (Bits) Value Ahg907642 jgi|Araly1|907642|Al_scaffold_0002_723 1035 0.0 > Ahg907642 jgi|Araly1|907642|Al_scaffold_0002_723 Length=1050 Score = 1035 bits (560), Expect = 0.0 Identities = 738/821 (90%), Gaps = 23/821 (3%) Strand=Plus/Plus Query 177 TCTTGGAAAAAGGAATCCTG-CAGTTAGTGGTGAGGATTATTTGAAAATGATTAATGAAA 235 ||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||| Sbjct 45 TCTTGGAAAAAAGAATCCTGTTA-TTAGTGGTGAAGATTATTTGGAAATGATTAATGAAA 103 Query 236 GAAGTGATCAGCTTTCGACAAGTTTTATGGATTTTGTAGATCAAGTGTTGAG-ATTGCAA 294 ||| | |||||||||| ||||||||||||| |||||| ||||| |||||| | ||||||| Sbjct 104 GAAATAATCAGCTTTCTACAAGTTTTATGGCTTTTGTGGATCATGTGTTG-GCATTGCAA 162 Query 295 GACAATTCTCCTCTACACAAGTTCTCTCTAAAGATCAGAGA--TTG-TGTTGATATAGTC 351 | ||||||||||||||||||||||||||||||| || |||| || ||||||| | || Sbjct 163 GGCAATTCTCCTCTACACAAGTTCTCTCTAAAGTTCGGAGACGGTGTTGTTGATCGATTC 222 Query 352 CGTATCATTTGTTGGATACTCAAGGTTTTGGAACGCGGTGTATCTGATCTTGAACTAGAC 411 ||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 223 CGTGTCATTCGTTGGATACTCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGAC 282 Query 412 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGTGAGACACTCGTT 471 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 283 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGCGAGACACTCGTT 342 Query 472 AGGCTGAAGCTAAGTGTGGAACGTGGCCCGTTCATTGATGTTGAAGATGTTCATCTTCCT 531 |||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 343 AGGCTGAAACTAAGTGTGGATCGTGGCCCGAGAATTGATGTTGATGATGTTCATCTTCCT 402 Query 532 AAGCTTAAGACTCTCCATATTGTGTCAGTCAAATTTGAAAAGCATGGTATTGGGCTTAAC 591 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 403 AAGCTTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAAC 462 Query 592 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAAATCTTGAATATATATCTTGGTGC 651 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 463 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAATATATATCTTGGTGC 522 Query 652 CTATGGGATTTTGTCTCTGTGTCTCTCACAACTCTCAAGAGGCTAACTTTTTGTGGGGAA 711 |||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| |||||| Sbjct 523 CTATGGGAATTTGTCTCTGTGTCTAGCACAACTCTCAAGAGACTAACGTTTTGCGGGGAA 582 Query 712 GTAATGCAAGATGAGAATCCAATAAGTGTGTCTTTTA-ATACTCCGAACCTTGTCTACTT 770 ||||||||||||||||||| || ||||||| | ||| |||||||||| ||||||||||| Sbjct 583 CTAATGCAAGATGAGAATCCGATTAGTGTGT-TGTTAGATACTCCGAATCTTGTCTACTT 641 Query 771 GATGTTTACTGATGCTATTGCGGACGAGTATTCAACAGTGAACTTCGATTCGCTTGTTGA 830 || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 642 GAAGTTTACTGATGTTATTGCGGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGA 701 Query 831 AGCTCATATCAATCTTCAGATGTCAGAAGATCAGGTTGA-GCAGACACGTTTTTCAGATT 889 ||| |||||||||||||||||||||||||||||| | || | || |||| |||||| ||| Sbjct 702 AGCCCATATCAATCTTCAGATGTCAGAAGATCAGATGGAAG-AGGCACGGTTTTCAAATT 760 Query 890 CTGAAGGTAATATGGAAGGCTGTATGGTAGCTAATGCAACAGAATTAATAATGGGAATAT 949 ||||||||||| ||| | | |||||||||||||| || ||||||||||||| Sbjct 761 CTGAAGGTAAT--------CTG---G-TCGCTAATGCAACAGATTTTATAATGGGAATAT 808 Query 950 GCAATGTGAAGATCCTTTATCTATCAGTTTATACTCTTGAG 990 ||||||||||||| |||| |||| ||| ||||||||||||| Sbjct 809 GCAATGTGAAGATTCTTTCTCTAGCAGCTTATACTCTTGAG 849 Score = 287 bits (155), Expect = 2e-76 Identities = 187/203 (92%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1294 GAGATAGAGAAGAGGATAGACCAAGTCAAGCATTTTCTAGAGAAGATACCGGATATTGAG 1353 ||||||||||||| |||||||||||||||||| |||||||||| ||| ||| || ||||| Sbjct 847 GAGATAGAGAAGAAGATAGACCAAGTCAAGCACTTTCTAGAGACGATGCCGTATGTTGAG 906 Query 1354 CAACTGATATTACACTATAATACACCAGTTGATGAAGATGTGATTAAAGTTTACCAGCAA 1413 ||||||||||||||||| || |||||| ||||||| ||||||||| |||||||||||||| Sbjct 907 CAACTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCAGCAA 966 Query 1414 CTTCGGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTGCAACTTATCTCTGATAAC 1473 |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 967 CTTCAGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTCCAACTAATCTCTGATAAC 1026 Query 1474 CTCAGCTTATCATCTAAAGACTG 1496 |||||||| |||||| ||||||| Sbjct 1027 CTCAGCTTGTCATCTCAAGACTG 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56830645540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5