BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58310.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907642 jgi|Araly1|907642|Al_scaffold_0002_723 1035 0.0
> Ahg907642 jgi|Araly1|907642|Al_scaffold_0002_723
Length=1050
Score = 1035 bits (560), Expect = 0.0
Identities = 738/821 (90%), Gaps = 23/821 (3%)
Strand=Plus/Plus
Query 177 TCTTGGAAAAAGGAATCCTG-CAGTTAGTGGTGAGGATTATTTGAAAATGATTAATGAAA 235
||||||||||| |||||||| | |||||||||| ||||||||| |||||||||||||||
Sbjct 45 TCTTGGAAAAAAGAATCCTGTTA-TTAGTGGTGAAGATTATTTGGAAATGATTAATGAAA 103
Query 236 GAAGTGATCAGCTTTCGACAAGTTTTATGGATTTTGTAGATCAAGTGTTGAG-ATTGCAA 294
||| | |||||||||| ||||||||||||| |||||| ||||| |||||| | |||||||
Sbjct 104 GAAATAATCAGCTTTCTACAAGTTTTATGGCTTTTGTGGATCATGTGTTG-GCATTGCAA 162
Query 295 GACAATTCTCCTCTACACAAGTTCTCTCTAAAGATCAGAGA--TTG-TGTTGATATAGTC 351
| ||||||||||||||||||||||||||||||| || |||| || ||||||| | ||
Sbjct 163 GGCAATTCTCCTCTACACAAGTTCTCTCTAAAGTTCGGAGACGGTGTTGTTGATCGATTC 222
Query 352 CGTATCATTTGTTGGATACTCAAGGTTTTGGAACGCGGTGTATCTGATCTTGAACTAGAC 411
||| ||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 223 CGTGTCATTCGTTGGATACTCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGAC 282
Query 412 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGTGAGACACTCGTT 471
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 283 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGCGAGACACTCGTT 342
Query 472 AGGCTGAAGCTAAGTGTGGAACGTGGCCCGTTCATTGATGTTGAAGATGTTCATCTTCCT 531
|||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 343 AGGCTGAAACTAAGTGTGGATCGTGGCCCGAGAATTGATGTTGATGATGTTCATCTTCCT 402
Query 532 AAGCTTAAGACTCTCCATATTGTGTCAGTCAAATTTGAAAAGCATGGTATTGGGCTTAAC 591
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 403 AAGCTTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAAC 462
Query 592 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAAATCTTGAATATATATCTTGGTGC 651
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 463 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAATATATATCTTGGTGC 522
Query 652 CTATGGGATTTTGTCTCTGTGTCTCTCACAACTCTCAAGAGGCTAACTTTTTGTGGGGAA 711
|||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| ||||||
Sbjct 523 CTATGGGAATTTGTCTCTGTGTCTAGCACAACTCTCAAGAGACTAACGTTTTGCGGGGAA 582
Query 712 GTAATGCAAGATGAGAATCCAATAAGTGTGTCTTTTA-ATACTCCGAACCTTGTCTACTT 770
||||||||||||||||||| || ||||||| | ||| |||||||||| |||||||||||
Sbjct 583 CTAATGCAAGATGAGAATCCGATTAGTGTGT-TGTTAGATACTCCGAATCTTGTCTACTT 641
Query 771 GATGTTTACTGATGCTATTGCGGACGAGTATTCAACAGTGAACTTCGATTCGCTTGTTGA 830
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 642 GAAGTTTACTGATGTTATTGCGGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGA 701
Query 831 AGCTCATATCAATCTTCAGATGTCAGAAGATCAGGTTGA-GCAGACACGTTTTTCAGATT 889
||| |||||||||||||||||||||||||||||| | || | || |||| |||||| |||
Sbjct 702 AGCCCATATCAATCTTCAGATGTCAGAAGATCAGATGGAAG-AGGCACGGTTTTCAAATT 760
Query 890 CTGAAGGTAATATGGAAGGCTGTATGGTAGCTAATGCAACAGAATTAATAATGGGAATAT 949
||||||||||| ||| | | |||||||||||||| || |||||||||||||
Sbjct 761 CTGAAGGTAAT--------CTG---G-TCGCTAATGCAACAGATTTTATAATGGGAATAT 808
Query 950 GCAATGTGAAGATCCTTTATCTATCAGTTTATACTCTTGAG 990
||||||||||||| |||| |||| ||| |||||||||||||
Sbjct 809 GCAATGTGAAGATTCTTTCTCTAGCAGCTTATACTCTTGAG 849
Score = 287 bits (155), Expect = 2e-76
Identities = 187/203 (92%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 1294 GAGATAGAGAAGAGGATAGACCAAGTCAAGCATTTTCTAGAGAAGATACCGGATATTGAG 1353
||||||||||||| |||||||||||||||||| |||||||||| ||| ||| || |||||
Sbjct 847 GAGATAGAGAAGAAGATAGACCAAGTCAAGCACTTTCTAGAGACGATGCCGTATGTTGAG 906
Query 1354 CAACTGATATTACACTATAATACACCAGTTGATGAAGATGTGATTAAAGTTTACCAGCAA 1413
||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||
Sbjct 907 CAACTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCAGCAA 966
Query 1414 CTTCGGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTGCAACTTATCTCTGATAAC 1473
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 967 CTTCAGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTCCAACTAATCTCTGATAAC 1026
Query 1474 CTCAGCTTATCATCTAAAGACTG 1496
|||||||| |||||| |||||||
Sbjct 1027 CTCAGCTTGTCATCTCAAGACTG 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5