BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G58320.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475448 jgi|Araly1|475448|fgenesh2_kg.2__578__AT1G58320.1          656    0.0  


> Ahg475448 jgi|Araly1|475448|fgenesh2_kg.2__578__AT1G58320.1
Length=444

 Score =  656 bits (355),  Expect = 0.0
 Identities = 415/443 (94%), Gaps = 7/443 (2%)
 Strand=Plus/Plus

Query  7    GAACAAGAAGGCAAAAATGAGAAGAAAGTAACTGAAGGGCAATGGACTACCGGTTTATAC  66
            ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  7    GAACAAGAAAGCAAAAATGAGAAGATAGTAACTGAAGGGCAATGGACTACCGGTTTATAC  66

Query  67   GACTGTCTCTCTGAAGATATCTCTACATGCTGCTTTACATGGGTTTGTCCTTGCGTTGCA  126
            || |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct  67   GATTGTCTCTCCGAAGATATCTCTACATGCTGCTTTACATGGTTTTGTCCATGCGTTGCA  126

Query  127  TTTGGGAGGATCGCTGAGATCCTTGATAAAGGAGAAACAAGTCG-AGGACTTGCTGGATT  185
            |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct  127  TTTGGGAGGATCGCTGAGATCCTTGATAAAGGAGAAACAAGT-GAAGGACTAGCTGGATT  185

Query  186  AATGGTGGTCGCAATGTCTAGCATTGGGTGTGGATGGTACTATGCTTCAAAATACAGAGC  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  AATGGTGGTCGCAATGTCTAGCATTGGGTGTGGATGGTACTATGCTTCAAAATACAGAGC  245

Query  246  CAAATTGAGGCATCAATACGCTTTGCCCGAGGCGCCTTGTGCCGATGGCGCCATTCACTG  305
            ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| 
Sbjct  246  CAAATTGAGGCATCAATACTCTTTGCCCGAGGAGCCTTGTGCCGATGGCGCCATTCACTT  305

Query  306  CTTCTGCTGTCCATGTGCTCTTACTCAAGAACACCGCGAACTCAAACATCGAGGTCTTGA  365
            |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct  306  CTTCTGCTGTCCATGTGCTCTTTCTCAAGAACACCGCGAACTCAAACATCGTGGTCTTGA  365

Query  366  TCCCTCTCTAGGGTGGAACATTGAGA-ATGGAGGATTAAACAGCAACACGCCCCCGTTTG  424
            ||| ||||||||    |||| ||||| | ||| ||| ||| ||||| ||||| |||||||
Sbjct  366  TCCTTCTCTAGGA---AACAATGAGACA-GGAAGATCAAATAGCAAAACGCCGCCGTTTG  421

Query  425  TAGCGTCAGGCATGGACCGTTAA  447
            ||||||| |||||||||||||||
Sbjct  422  TAGCGTCTGGCATGGACCGTTAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5