BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58330.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925174 jgi|Araly1|925174|scaffold_200735.1 1018 0.0
> Ahg925174 jgi|Araly1|925174|scaffold_200735.1
Length=733
Score = 1018 bits (551), Expect = 0.0
Identities = 675/735 (92%), Gaps = 7/735 (1%)
Strand=Plus/Plus
Query 1 CTTGGAACTATATATGAGTCATGCCAATCACTAGCAGCTCTGAAACTTTTGCGAGCTTCT 60
||||||| |||| |||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 1 CTTGGAAGTATACATGAGTCATGCCAAGCACCAGCAGCTCTGAAACCTTTGCGAGCTTCT 60
Query 61 TCAATGACTGGC-TCTGCCGTCACAGGCAATTCGTCCAACAACTTGCACACCTTGCTGAT 119
| |||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 TTAATGACTGGCTTCT-CCGTCACAGGCAATTCGTCCAAGAACTTTCACACCTTGCTGAT 119
Query 120 GAAACAACCATTGTAACTCCAATAGAAGAAGAATCTCTTGTGAGTAACTTTCTTTCTCAC 179
||||| |||| | |||||| ||||||||||||| ||| || ||||||||||||||||
Sbjct 120 GAAACCACCA--G-AACTCCGGTAGAAGAAGAATCACTTTTGTCTAACTTTCTTTCTCAC 176
Query 180 TATCTCCAATACTACGAAGAGAAATCAGTTGCCATGTCCGTGGCCGGTGACGATATATAT 239
| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 177 TGTCTCCAATACTACGAAGAGAAATCACTTGCCATGTCCGTGGCCGGTGACGATGTATAC 236
Query 240 GATTTCTTCTCTCCACCATGGCTCAGCTCATACGAGAAACTCATCCTCTGGATCGGAGGT 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 GATTTCTTCTCCCCACCATGGCTCAGCTCATACGAGAAACTCATCCTCTGGATTGGAGGT 296
Query 300 TTTAAACCAGGTATGGTTTTTAAGCTCATAACCACTTCTGTTAATGACCTTACGAGCCAC 359
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 297 TTCAAACCAGGTATGGTTTTTAAACTCATAACCACTTCTGTTAACGACCTTACGAGCCAC 356
Query 360 CAAATAGACCAACTCGAGAGCATTCGGTTAGAGACTAAACGGAGGGAGAGAGATTTGATG 419
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 CAAATAGACCAACTTGAGAACATCCGGTTAGAGACTAAACGGAGGGAGAGAGATTTGATG 416
Query 420 CGAAGGTTCGCGCTTCTACAACAGAGCGTGGGGGATCCACTTCTGATGGTTCCATTTAGG 479
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 417 CGAAGGTTTGCGCTTCTACAACAGAGCGTGGGGGATCCGCCTCTGATGGTTCCATTTAGG 476
Query 480 CGCATCGGAGTGTTGAGGCTTGGCGAAGGAGAGCAGCCAGAAATGGAGGATGCAATGGAG 539
|||||||| |||||||| || ||||||||||||||| ||||||||||||| ||||||||
Sbjct 477 CGCATCGGTGTGTTGAGCCTCGGCGAAGGAGAGCAGTCAGAAATGGAGGAGGCAATGGAT 536
Query 540 GTTTTGAAGGTAGAGATGATTAAAGCGATGAAGAACGCTGATCAACTCCGGTGTGTGACG 599
||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 537 GTTATGAAGGAAGAGATGATTACGGCCATGAAGAACGCTGATCAACTCCGGTGTGTGACG 596
Query 600 GTTGGGAAAGTGGTGGAGGTTCTGAATCCACGGCAGTCGATCAAGCTGCTAAGAGCCGCT 659
||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 597 GTTGGGAAAGTGGTGGAGGTTCTAAATCCACGGCAGGCGATTAAGCTGCTAAGAGCCGCC 656
Query 660 GGAGAGTTTTATCTCCGGCTGAGAGATTTAGGTGTGTAGAGAGAAACAGTTCTTTGCTAG 719
|||||||||||||||| ||||||||||||||||| ||| ||||||||| | ||| |||
Sbjct 657 GGAGAGTTTTATCTCCTCCTGAGAGATTTAGGTGTACAGATAGAAACAGTGCGTTGATAG 716
Query 720 GACTTTAATGTTCtt 734
|||| |||||||||
Sbjct 717 GACT--AATGTTCTT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5