BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58340.1
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925173 jgi|Araly1|925173|scaffold_200734.1 2566 0.0
> Ahg925173 jgi|Araly1|925173|scaffold_200734.1
Length=1639
Score = 2566 bits (1389), Expect = 0.0
Identities = 1555/1638 (95%), Gaps = 0/1638 (0%)
Strand=Plus/Plus
Query 135 GTTTACTCCTCTTAAGAATCATGTGTAATTCAAAACCATCTTCTGCTTCATCTTCCTTAT 194
|||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1 GTTTACTCGTCTCGAGAATCATGTGTAACTCAAAACCATCTTCTGCTTCCTCTTCCTTAT 60
Query 195 TATCTTGTAAAGACAAAACCCATATCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCTTGTAAAGACAAAACCCATTTCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 120
Query 255 ATTATTCTGAATTCAGGGATACTGATTCTCTAGACCTTAAAAGATGGCCAAGTTTTCTGG 314
||||||| || |||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ATTATTCCGACTTCACGGATAATGATTCTCTAGACCTTAAAAGATGGCCAACTTTTCTGG 180
Query 315 AGGGCTTAGAGGAAGTGAAGGCGATCGGAAAAATCTCTGGGCCGACGGCGATGACCGGGC 374
|||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 181 AGGGCTTAGAGGAAGTGAAGGCAATAGGAAGAATCTCTGGGCCGACGGCGATGACCGGGC 240
Query 375 TTCTTATGTACTCAAGAGCGATGATATCGATGCTGTTCTTAGGCTACCTCGGTGAGCTTG 434
||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 241 TTCTTATGTACTCAAGAGCAATGATATCGATGCTGTTCCTAGGCTACCTCGGCGAGCTTG 300
Query 435 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 360
Query 495 CCGGTTTGTCCATGGGGATGGAACCAATCTGTGGCCAAGCATACGGAGCTAAACAAATGA 554
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 361 CCGGTTTGTCCATGGGGATGGAACCAATCTGCGGCCAAGCCTACGGAGCTAAACAAATGA 420
Query 555 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 480
Query 615 TCTCCTTCTCGTGGCTCAACATGCGCCGAATCCTCTTATGGTGCGGCCAAGATGAAGAGA 674
| || ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 481 TATCTTTCTCTTGGCTCAACATGCGTCGAATCCTCTTATGGTGTGGCCAAGACGAAGAGA 540
Query 675 TCTCCTCTGTTGCTCAACAGTTCCTTCTATTCGCCATCCCTGACCTCTTCCTTCTCTCTC 734
||||| | ||||||||| |||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 541 TCTCCACCGTTGCTCAAAAGTTCCTTCTCTTCGCTATCCCTGACCTCTTCCTCCTCTCTC 600
Query 735 TGCTTCACCCTCTTCGAATTTACCTCCGAACACAAAACATTACATTGCCCGTGACTTACT 794
| ||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 TACTTCATCCTCTTCGCATTTACCTTCGAACACAAAACATTACATTACCCGTGACTTACT 660
Query 795 CCACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTTG 854
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CTACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTGG 720
Query 855 AGATGGGAGTAGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 914
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAATGGGAGTCGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 780
Query 915 TCTTATCCTCTTTTGTGTATTTCACTAGCGTGCATAGTGATACATGGGTCCCAATTACTA 974
||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 781 TCTTATCTTCCTTTGTGTATTTCACGAGCGTGCATAGTGACACATGGGTCCCAATTACTA 840
Query 975 TTGACTCTCTTAAAGGTTGGTCGGCTTTGCTCTCACTTGCCATACCCACTTGTGTATCTG 1034
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 841 TTGACTCCCTTAAAGGTTGGTCATCTTTGCTCTCACTTGCCATACCCACTTGTGTGTCTG 900
Query 1035 TTTGTTTGGAGTGGTGGTGGTACGAGTTTATGATCATTTTGTGTGGACTTTTGGCTAACC 1094
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 TTTGTTTGGAGTGGTGGTGGTACGAGTTCATGATCATTTTGTGTGGACTTTTGGCTAACC 960
Query 1095 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTCT 1154
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTAT 1020
Query 1155 TCCCATCCTCTCTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1214
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCCCATCTTCACTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1080
Query 1215 GTCCGGCGAAAGCTCGGGTATCCATGATCATCTCACTCTTCTGCGCGATCGCCTTAGGCC 1274
| ||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1081 GCCCGGCCAAAGCTCGTGTATCCATGATCATTTCACTCTTCTGCGCGATCACCTTAGGCT 1140
Query 1275 TAATGGCGATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGACGCTTGTTTACCACGG 1334
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1141 TAATGGCAATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGTCGCATGTTTACCACGG 1200
Query 1335 ATGCAGAGATTCTTCAGCTGACTTCCATCGCATTACCCATTGTGGGGTTATGTGAGCTCG 1394
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 ATGCAGAAATTCTTCAGCTGACTTCCATCGCATTGCCCATTGTGGGGTTATGTGAGCTCG 1260
Query 1395 GAAACTGTCCTCAAACAACCGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCTACACTTG 1454
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1261 GAAACTGTCCTCAAACGACTGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCAACACTTG 1320
Query 1455 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCAGTCGCTATTCTGTTTG 1514
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1321 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCGGTCGCTATTCTGTTTG 1380
Query 1515 GGTTTGTTTTCAAACAAGGGTTTCCAGGTCTCTGGTTCGGGTTGCTTGCAGCTCAAGCAA 1574
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1381 GGTTTTTTTTCAAACAAGGGTTTCCAGGTCTCTGGCTCGGGTTGCTTGCAGCTCAAGCAA 1440
Query 1575 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGAAAGTCCAAGCCGAGA 1634
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1441 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGGCAGTCCAAGCGGAGA 1500
Query 1635 GAGCTGAAGAGCTGACGTCACAAACTCCCGGAAAGTCTCCGCCCCTTCTCCCCATCGCAA 1694
||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||| |
Sbjct 1501 GAGCTGAAGAGCTGACGTCTCAAACTCCCGGAAAGACTCCTCCTCTTCTCCCCATCGCCA 1560
Query 1695 GCTCAAAGAGCCGGTCTACCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1754
| || |||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GGTCTAAGAACCTGTCTAGCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1620
Query 1755 TTGATAGCTATTCTCTGG 1772
|||||||||||||| |||
Sbjct 1621 TTGATAGCTATTCTTTGG 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78046912005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5