BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58340.1 Length=2075 Score E Sequences producing significant alignments: (Bits) Value Ahg925173 jgi|Araly1|925173|scaffold_200734.1 2566 0.0 > Ahg925173 jgi|Araly1|925173|scaffold_200734.1 Length=1639 Score = 2566 bits (1389), Expect = 0.0 Identities = 1555/1638 (95%), Gaps = 0/1638 (0%) Strand=Plus/Plus Query 135 GTTTACTCCTCTTAAGAATCATGTGTAATTCAAAACCATCTTCTGCTTCATCTTCCTTAT 194 |||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1 GTTTACTCGTCTCGAGAATCATGTGTAACTCAAAACCATCTTCTGCTTCCTCTTCCTTAT 60 Query 195 TATCTTGTAAAGACAAAACCCATATCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 254 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 TATCTTGTAAAGACAAAACCCATTTCTCAAAACTCGAAACCTGTGATACAGATAATCCTC 120 Query 255 ATTATTCTGAATTCAGGGATACTGATTCTCTAGACCTTAAAAGATGGCCAAGTTTTCTGG 314 ||||||| || |||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 121 ATTATTCCGACTTCACGGATAATGATTCTCTAGACCTTAAAAGATGGCCAACTTTTCTGG 180 Query 315 AGGGCTTAGAGGAAGTGAAGGCGATCGGAAAAATCTCTGGGCCGACGGCGATGACCGGGC 374 |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| Sbjct 181 AGGGCTTAGAGGAAGTGAAGGCAATAGGAAGAATCTCTGGGCCGACGGCGATGACCGGGC 240 Query 375 TTCTTATGTACTCAAGAGCGATGATATCGATGCTGTTCTTAGGCTACCTCGGTGAGCTTG 434 ||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 241 TTCTTATGTACTCAAGAGCAATGATATCGATGCTGTTCCTAGGCTACCTCGGCGAGCTTG 300 Query 435 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTTAGCCGGAGGATCTCTCTCCATAGGCTTTGCCAATATCACCGGCTACTCCGTCATCT 360 Query 495 CCGGTTTGTCCATGGGGATGGAACCAATCTGTGGCCAAGCATACGGAGCTAAACAAATGA 554 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 361 CCGGTTTGTCCATGGGGATGGAACCAATCTGCGGCCAAGCCTACGGAGCTAAACAAATGA 420 Query 555 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGCTTTTAGGACTAACCCTTCAAAGAACCGTCCTCCTACTCCTCTCCTGCTCGGTCCCTA 480 Query 615 TCTCCTTCTCGTGGCTCAACATGCGCCGAATCCTCTTATGGTGCGGCCAAGATGAAGAGA 674 | || ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 481 TATCTTTCTCTTGGCTCAACATGCGTCGAATCCTCTTATGGTGTGGCCAAGACGAAGAGA 540 Query 675 TCTCCTCTGTTGCTCAACAGTTCCTTCTATTCGCCATCCCTGACCTCTTCCTTCTCTCTC 734 ||||| | ||||||||| |||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 541 TCTCCACCGTTGCTCAAAAGTTCCTTCTCTTCGCTATCCCTGACCTCTTCCTCCTCTCTC 600 Query 735 TGCTTCACCCTCTTCGAATTTACCTCCGAACACAAAACATTACATTGCCCGTGACTTACT 794 | ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 601 TACTTCATCCTCTTCGCATTTACCTTCGAACACAAAACATTACATTACCCGTGACTTACT 660 Query 795 CCACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTTG 854 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 661 CTACGGCCGTGTCCGTTCTCCTCCACGTTCCTTTGAACTACCTCCTAGTGGTGAAACTGG 720 Query 855 AGATGGGAGTAGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 914 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AAATGGGAGTCGCGGGAGTCGCTATAGCTATGGTTTTGACAAATCTCAACCTTGTAGTCC 780 Query 915 TCTTATCCTCTTTTGTGTATTTCACTAGCGTGCATAGTGATACATGGGTCCCAATTACTA 974 ||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 781 TCTTATCTTCCTTTGTGTATTTCACGAGCGTGCATAGTGACACATGGGTCCCAATTACTA 840 Query 975 TTGACTCTCTTAAAGGTTGGTCGGCTTTGCTCTCACTTGCCATACCCACTTGTGTATCTG 1034 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 841 TTGACTCCCTTAAAGGTTGGTCATCTTTGCTCTCACTTGCCATACCCACTTGTGTGTCTG 900 Query 1035 TTTGTTTGGAGTGGTGGTGGTACGAGTTTATGATCATTTTGTGTGGACTTTTGGCTAACC 1094 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 901 TTTGTTTGGAGTGGTGGTGGTACGAGTTCATGATCATTTTGTGTGGACTTTTGGCTAACC 960 Query 1095 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTCT 1154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 961 CAAGAGCCACCGTGGCTTCCATGGGAATCTTGATCCAAACGACGGCTTTGGTCTACGTAT 1020 Query 1155 TCCCATCCTCTCTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1214 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCCCATCTTCACTCAGCCTTGGTGTCTCTACAAGAATTAGCAACGAGCTTGGGGCTAAAC 1080 Query 1215 GTCCGGCGAAAGCTCGGGTATCCATGATCATCTCACTCTTCTGCGCGATCGCCTTAGGCC 1274 | ||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||| Sbjct 1081 GCCCGGCCAAAGCTCGTGTATCCATGATCATTTCACTCTTCTGCGCGATCACCTTAGGCT 1140 Query 1275 TAATGGCGATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGACGCTTGTTTACCACGG 1334 ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1141 TAATGGCAATGGTGTTTGCTGTGCTGGTTAGGCACCATTGGGGTCGCATGTTTACCACGG 1200 Query 1335 ATGCAGAGATTCTTCAGCTGACTTCCATCGCATTACCCATTGTGGGGTTATGTGAGCTCG 1394 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1201 ATGCAGAAATTCTTCAGCTGACTTCCATCGCATTGCCCATTGTGGGGTTATGTGAGCTCG 1260 Query 1395 GAAACTGTCCTCAAACAACCGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCTACACTTG 1454 |||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 1261 GAAACTGTCCTCAAACGACTGGTTGTGGGGTTTTAAGAGGCTGTGCAAGACCAACACTTG 1320 Query 1455 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCAGTCGCTATTCTGTTTG 1514 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1321 GTGCCAACATAAACTTGGGTTCATTTTACTTTGTGGGCATGCCGGTCGCTATTCTGTTTG 1380 Query 1515 GGTTTGTTTTCAAACAAGGGTTTCCAGGTCTCTGGTTCGGGTTGCTTGCAGCTCAAGCAA 1574 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1381 GGTTTTTTTTCAAACAAGGGTTTCCAGGTCTCTGGCTCGGGTTGCTTGCAGCTCAAGCAA 1440 Query 1575 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGAAAGTCCAAGCCGAGA 1634 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1441 CTTGTGCTTCTCTCATGTTGTGTGCACTTTTGAGAACAGATTGGGCAGTCCAAGCGGAGA 1500 Query 1635 GAGCTGAAGAGCTGACGTCACAAACTCCCGGAAAGTCTCCGCCCCTTCTCCCCATCGCAA 1694 ||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||| | Sbjct 1501 GAGCTGAAGAGCTGACGTCTCAAACTCCCGGAAAGACTCCTCCTCTTCTCCCCATCGCCA 1560 Query 1695 GCTCAAAGAGCCGGTCTACCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1754 | || |||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1561 GGTCTAAGAACCTGTCTAGCTCCGGTACAGAAGATATGATGAGAACCATGTTGGTTTAGA 1620 Query 1755 TTGATAGCTATTCTCTGG 1772 |||||||||||||| ||| Sbjct 1621 TTGATAGCTATTCTTTGG 1638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78046912005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5