BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58350.1
Length=3046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475399 jgi|Araly1|475399|fgenesh2_kg.2__529__AT1G58350.1 3938 0.0
Ahg919770 jgi|Araly1|919770|scaffold_101051.1 2244 0.0
> Ahg475399 jgi|Araly1|475399|fgenesh2_kg.2__529__AT1G58350.1
Length=2968
Score = 3938 bits (2132), Expect = 0.0
Identities = 2476/2637 (94%), Gaps = 43/2637 (2%)
Strand=Plus/Plus
Query 393 TGAGAAGAACACAGTCAAAGATTTAGAAAGTGATGTGATTTTTTGGGTTCACATATGTTA 452
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TGAAAAGAACAGAGTCAAAGATTTAGAAAGTGATGTGATTTTTTGGGTTCACATATGTTA 423
Query 453 CACCGTCTTAGATGGTTTATTGGATTGAGTAAAAGAAGTAGAGAAGCCAAGACGCTTGAT 512
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 424 CACCGTCTTAGATGGTTAATTGGATTGAGTAAAAGAAGTAGACAAGCAAAGACGCTTGAT 483
Query 513 GCGAAACCTTACATATCCAAGGTTAAGCCAGTACTGATGGTTGACACGGTTCAAGAGATT 572
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCTAAACCTTACATAGCCAAGGTTAAGCCAGTACTGATGGTTGACACGGTTCAAGAGATT 543
Query 573 GCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGATGGTATCAAATC 632
||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 544 GCGATTTATATCCACCGGTTTCATAACCTTGATCTTTTCCAACAAGGATGGTATCAAATC 603
Query 633 AAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTC 692
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 604 AAAATCACCATGAGATGGGAGGATGGAGATAACGTAACTCGGGGTATTCCTTCACGAGTC 663
Query 693 GTGCAATATGAAGCTCCTGATTCCGGTGCTAATGACTCATATGGAGTGTGGAAGATAGTT 752
|| || ||||||||| |||| |||||| |||||||||| || |||||||||| |||||||
Sbjct 664 GTTCAGTATGAAGCTACTGAATCCGGTTCTAATGACTCGTACGGAGTGTGGAGGATAGTT 723
Query 753 GATAAAGATAATAGTTTCTTAACACAGCCTTTCCGTATCAAATATGCAAGGCAGGATATT 812
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 724 GATAAAGATAATAGTTTCTTAACACAGCCCTTCCGTATCAAATATGCACGGCAGGATATT 783
Query 813 CGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAGGGGTCAGCTACA 872
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 784 CGTTTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAGGGATCAGCTACA 843
Query 873 TCTGCTGCTATATTAAAGTTTGAGCTCATGTATGCTCCCTCTGTAGATAATGCATCAGCG 932
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 TCTGCTGCTATATTAAAGTTTGAGCTCATGTATGCTCCTTCTGTAGATAATGCATCAGCG 903
Query 933 AAGCAATTAGATACTTCTCCTGTTGCAGTTCATGAGTTCCGTATTCCTCCTAAAGCTCTT 992
||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AAGCATTTAGATGCTTCTTCTGTTGCAGTTCATGAGTTCCGTATTCCTCCTAAAGCTCTT 963
Query 993 ACAGGCTTGCATTCATACTGTCCAGTGCATTTTGATACACTTCACGCAGTTCTTATTGAT 1052
|||||||||||||| ||||||||||||||||||||||||||||| || |||||| | |||
Sbjct 964 ACAGGCTTGCATTCTTACTGTCCAGTGCATTTTGATACACTTCATGCGGTTCTTGTCGAT 1023
Query 1053 GTGAGTGTCCACATCAGTGTATTGAAATCGGCTGCTTACAAACGACCTGCAAGTCTATCA 1112
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1024 GTGAGTGTCCACATCAGTGTATTGAAATCGGCTGCGTATAAACGACCTGCACGTCTATCA 1083
Query 1113 AGTGGCGTAAGTAACAGTAAAAATGTCAGTGGCAGCAGTGCTCAGTCTTTTAAGAAAGCA 1172
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1084 AGTGGCGTAAGTAACAGTAAAAATGTCAGTGGCAGCAGCGCTCAATCTTTTAAGAAAGCA 1143
Query 1173 CTTGGTTTGCTTGCTTCTGCTGACAAGAAACTGGTGTCATTTGTTAAAGCATTACTTGGA 1232
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1144 CTTGGTTTGCTTGCTTCTGCTGATAAGAAACTGGTGTCATTTGTCAAAGCATTACTTGGA 1203
Query 1233 GCTCGTGGTATTTTACTCGAGGAAATGCAAAGACTTAGCAAGGCAGTTGGTCAGACAATA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1204 GCTCGTGGTATTTTACTCGAGGAAATGCAAAGACTTAGCAAGGCAGTTGGTCAAACGATA 1263
Query 1293 GACTTGTCTGACTTTGTATCAAATATGAACAATGTTCAGTTATCTAACTCAACAAGTACC 1352
||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| || |
Sbjct 1264 GACTTGTCTGACTTTGTATCAAACATGAACAATATTCCCTTATCAAACTCAACAATTAAC 1323
Query 1353 GGTTCAGGACAAGGCAAGGAACAAAACAGTCTTGAGAATTTGAATATTACATTTGATTTA 1412
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1324 GGTTCAGGACAAGGCAAGGAACAAAACAGTCTTGAGAAGTTGAATATCACATTTGATTTA 1383
Query 1413 ACAAGTGATGACTGGCTTCATGAACTCTCGAAAGATCATCTATCCCGTATATTCCACTTA 1472
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1384 GCAAGTGATGATTGGCTTCATGAACTCTCGAAGGATCATCTATCCCGTATATTCCACTTA 1443
Query 1473 CTGGGCACCCAACTGCATTATCTTTGGAACACACTTCTGGGATTTCACCGGGATAATCAC 1532
||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1444 CTGGGCACCCAGCTGCATCATCTTTGGAACACATTTCTGGGATTTCACCGGGATAATCAC 1503
Query 1533 ACAAAAATACTTGAATATCTTCGTGATATCTGGACTAAAGATCGGAGAGCTGAATGGTCA 1592
||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1504 ACAAAAATACTGGAATATCTTTGTGATATCTGGACTAAAGATCGAAGAGCTGAATGGTCA 1563
Query 1593 ATATGGATGGTGTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAATGACA 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 ATATGGATGGTGTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAATGACA 1623
Query 1653 GATATCTTAAACCAGAGCGCGCACAAAAGGGCCTCAGGCGTGTTGAATGAACCGGCCCAA 1712
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1624 GATATCTTAAACCAGAGTGCACACAAAAGGGCCTCAGGCGTATTGAATGAACCGGCCCAA 1683
Query 1713 ATTGCAGCTACACGTGCTGAACTTCACCGTCGGAGTATTGCACAGATGCGGATTAACAAC 1772
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1684 ATTGCAGCTACCCGTGCTGAACTTCACCGTCGAAGTATTGCACAGATGCGGATTAACAAC 1743
Query 1773 CGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATT 1832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1744 CGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATAATT 1803
Query 1833 GAACGTGTCTTGAATGCACCAAGACGCACTTTAAGTGATAATTCGTATTTGAGACATATG 1892
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1804 GAACGTGTCTTGAATGCACCAAGACGCACTTTAAGTGATAATTCGTATCTGAGACATATG 1863
Query 1893 GATCTGCTTGATTCTAGCTTGCTAAATGGGCACAAGGATGAAGCAGAAAAAACAAAAG-T 1951
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 1864 GATCTGCTTGATTCTAGCTTACTTAATGGGCACAAGGATGAAGCAGAAAAAACAAAAGCT 1923
Query 1952 CACTAACTCCCAGCAAAGTGCCCGTGAACTAAAAATCGTCGTATTTGTTCATGGTTTTCA 2011
||||||||||| |||||||||||||||||||||||||| | | || ||
Sbjct 1924 -ACTAACTCCCACCAAAGTGCCCGTGAACTAAAAATCGT--T----G-----GG----CA 1967
Query 2012 GGGGCATCACTTGGACTTAAGGCTTGTCCGGAATCAGTGGCTTCTGATAGATCCAAAGAT 2071
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1968 ------TCACTTGGACTTACGGCTTTTCCGGAATCAGTGGCTTTTGATAGATCCAAAGAT 2021
Query 2072 AGAGTTTCTCATGTCTGAGGCAAATGAGGAGAAAACACATGGTGATTTCAGGGAAATGGG 2131
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2022 AGAGTTTCTCATGTCAGAGGCAAATGAGGAGAAAACACATGGCGATTTCAGGGAAATGGG 2081
Query 2132 ACAAAGGCTCGCTCAAGAAGTTGTTTCTTTCCTTAAGAGGAAAAAGGATAGATATGCAAG 2191
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2082 ACAAAGGCTCGCGCAGGAAGTTGTTTCTTTCCTTAAGAGGAAAAAGGATAGATATGCGAG 2141
Query 2192 ACAAGGG-CATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGGCAATGTCA 2250
||| ||| || |||||||||||||||||||||||||| || ||||| || ||||||||||
Sbjct 2142 ACA-GGGACAATTGAAAAGCATCAAATTGAGTTTTGTCGGGCATTCCATCGGCAATGTCA 2200
Query 2251 TCATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGTATCTACACACAT 2310
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2201 TTATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGTTTCTACACACAT 2260
Query 2311 ATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTTGTTTAATT 2370
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2261 ATCTATCGCTTTCAGGTCCGCACTTGGGGTATCTATACAGTACAAACTCCTTATTTAATT 2320
Query 2371 CCGGGCTTTGGCTACTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCTTACACTCA 2430
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 CCGGGCTTTGGCTCCTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCTTACACTCA 2380
Query 2431 CAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAAGACATTGG 2490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2381 CAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAAGACATTGG 2440
Query 2491 AGAATTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCCATATCACT 2550
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 AAAACTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCCATATCACT 2500
Query 2551 CAGCAAGAATCGAGTCATGCCAACCTGCTTCTTTCGACAGCTCGAAAAGGGGAGTTGCCT 2610
|||||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||
Sbjct 2501 CAGCAAGAATTGAATCATGCCAACCAGCTTCTTTCGACAGCTCGAAAAAGGGAGTAGCCT 2560
Query 2611 TCTTGGAAATGCTGAATAATTGTCTGGACCAAATACGTGGACCGGTCCCCGAAGCACCTC 2670
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 2561 TCTTGGAAATGCTGAATAATTGTTTGGACCAAATACGTGGACCGGTACCCGAAGCACCAC 2620
Query 2671 ATCAGCAAAGGGTGTTCATGCGCTGCGACGTCAACTTTGACATGACCGTTTATGGTCGTA 2730
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 2621 ATCAGCAACGGGTGTTCATGCGCTGCGACGTCAACTTCGACATGACCGTGTATGGCCGTA 2680
Query 2731 ACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTGGAGTCCGATATATTTG 2790
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 2681 ACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTAGAGTCGGATATCTTTG 2740
Query 2791 CTAGATTTATAATGTGGTCATTCCAAGATCTTTTCCGCTGAATTTTG-TACCAAGTTGAA 2849
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 2741 CTAGATTCATAATGTGGTCATTCCAAGATCTTTTCCGCTGAATTTTGGTACCAAGTTGGA 2800
Query 2850 GAAATTTTGGGATTTACAGAGAGATATAAACTGTTGTATATTAACT-T-T-G-TAGATAG 2905
|||||||||||||| |||| ||||||||||||||||||||||| || | | | |||| ||
Sbjct 2801 GAAATTTTGGGATTCACAGTGAGATATAAACTGTTGTATATTAGCTATATAGATAGACAG 2860
Query 2906 -TT-TT--GTCTACAATTGCTGTCGCGAGAAAGAAAAAACAGATAGTTGGCTTTACAAGC 2961
|| || ||||||||||||| | | |||| |||||| ||||||||||| | ||||||
Sbjct 2861 ATTGTTTTGTCTACAATTGCTTT-G-GAGA--GAAAAAT-AGATAGTTGGCCT-ACAAGC 2914
Query 2962 AATGTTGTACGTTCTTGTAGATATAGATAGAttttttttttttttctttattttttG 3018
||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 2915 AATGT---ACGTTCTTGTAGATATAGATAGATTTTTTTTTTTTTTTTTTTTTTTTTG 2968
Score = 307 bits (166), Expect = 3e-82
Identities = 238/272 (88%), Gaps = 7/272 (3%)
Strand=Plus/Plus
Query 1 TTACCCGACAAATTTACTCAAAAATCCGACCTAAAGTTTTGATTTTTATAATCAAATTTC 60
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 1 TTACCCGACAAATTTACTC--AATTCCGACCTAAAGTTTTGATTTTTATAATCAATTTTT 58
Query 61 CTCGAATTGCTCGACAAAAGTTTATTCCTTTACCATCACAATTTGTAGTTTACCCAGATC 120
|||||||| |||||||||| |||||||||| |||||||||||||||| ||| ||||||||
Sbjct 59 CTCGAATTACTCGACAAAATTTTATTCCTTCACCATCACAATTTGTATTTTTCCCAGATC 118
Query 121 CTTTTCTCCTCTGTTTTTTCTTTCGCATTGTTATCTTCAGTGTCTGTCTCATTGTTCCCT 180
||||| ||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 119 CTTTTTTCCTCTGTTCT--CTTTCACATTGTTATCTTCAGTGTCTGTCACATTGTTCTCT 176
Query 181 TTTCCCAGAAGCTGAAAC-AAATCTGttttttttttttttGTTTTGTTTCTGTGAATCTT 239
|| ||||||||||||||| ||| | | ||||||| ||| ||||||||||||| |
Sbjct 177 TTCCCCAGAAGCTGAAACCAAAAAAAAGCTATATTTTTTT-TTTCGTTTCTGTGAATCGT 235
Query 240 CAGATCTTGATCTGAGAGACCCTACAGATTCT 271
||||||||||||||||||||| || || ||||
Sbjct 236 CAGATCTTGATCTGAGAGACC-TAAAGGTTCT 266
> Ahg919770 jgi|Araly1|919770|scaffold_101051.1
Length=2449
Score = 2244 bits (1215), Expect = 0.0
Identities = 2056/2451 (84%), Gaps = 102/2451 (4%)
Strand=Plus/Plus
Query 444 CATATGTTACACCGTCTTAGATGGTTTATTGGA-TTGAGTAAAAGAAGTAGAG-AAGCCA 501
|||||||||| ||||||| ||||||| |||||| || || |||||||||| | || | |
Sbjct 18 CATATGTTACGCCGTCTTGGATGGTTAATTGGACTT-AGCCAAAGAAGTAG-GCAAACTA 75
Query 502 AGACGCTTGATGC-GAAACCTTACATATCCAAGGTTAAGCCAGTACTGATGGTTGACACG 560
|| |||||||||| | | |||||| || ||| ||||||||| || || ||||| |||||
Sbjct 76 AGTCGCTTGATGCTG-AGCCTTACGTAGCCAGGGTTAAGCCGGTGCTAATGGTCGACACA 134
Query 561 GTTCAAGAGATTGCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGA 620
||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 135 GTTCAGGAGATTGCTATCTATATCCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGA 194
Query 621 TGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACT-C-GTGGTA 678
||||||||||| ||||| | ||||||||||||||||||||||||| || | | |||| |
Sbjct 195 TGGTATCAAATAAAAATTAGCATGAGATGGGAGGATGGTGATAAC--AATTCCTGTGGAA 252
Query 679 TTCCTTCACGAGTCGTGCAATATGAAGCTCCTGATTC--CGGTGCTAATGACTCATATGG 736
||||||||||||| || || |||||||||| |||||| | | | || |||||||||||
Sbjct 253 TTCCTTCACGAGTTGTTCAGTATGAAGCTCTTGATTCAAC-CT-CAAACGACTCATATGG 310
Query 737 AGTGTGGAAGATAGTTGATAAAGATAATAGTTTCTTAACACAGCCTTTCCGTATCAAATA 796
|||||||||||||| |||||| |||| |||||||||||||||||| ||||| || |||||
Sbjct 311 AGTGTGGAAGATAGATGATAAGGATAGTAGTTTCTTAACACAGCCCTTCCGCATTAAATA 370
Query 797 TGCAAGGCAGGATATTCGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATA 856
||||||||||||| ||||||| || |||||| ||||||||||| |||| |||||| ||||
Sbjct 371 TGCAAGGCAGGATGTTCGTCTCTGCATGATGGTCTCATTTACTATGCCTCTGGAAAGATA 430
Query 857 TGAGGGGTCAGCTACATCTGCTGCTATATT-AAAGTTTGAGCTCATGTATGCTCC-CTC- 913
|||||||||||||||||||||| |||||| ||| |||||||| ||||| |||| ||
Sbjct 431 CGAGGGGTCAGCTACATCTGCTGTTATATTGAAA-TTTGAGCTTTTGTATTCTCCAATCA 489
Query 914 TGTA-GATAATGCATCAGCGAAGCA-ATT-AGATACTTCTCCTGTTGCAGTTCATGAGTT 970
|| | ||| || | ||| | | || ||| |||| ||| ||||| ||||| ||||| ||
Sbjct 490 TGGAGGAT-AT--ACCAGTG-A-CACATTCAGATGCTTGTCCTGCGGCAGTGCATGAATT 544
Query 971 CCGTATTCCTCCTAAAGCTCTTACAGGCTTGCATTCATACTGTCCAGTGCATTTTGATAC 1030
||||||||||||||||||||| ||||| ||||||| |||||||| ||||| ||||||||
Sbjct 545 TCGTATTCCTCCTAAAGCTCTTTCAGGCGTGCATTCTTACTGTCCCGTGCACTTTGATAC 604
Query 1031 AC-TTCACGCAGTTCTTATTGATGTGAGTGTCCACATCAGTGT-ATTGAAATCGGCTGCT 1088
| ||||||| |||||||| ||||| ||||||||| |||| || | ||||||| ||||||
Sbjct 605 -CTTTCACGCGGTTCTTATAGATGTAAGTGTCCACGTCAGCGTCA-TGAAATCTGCTGCT 662
Query 1089 TACAAACGACCTGCAAGTCTATCAAGTG--GCGTAAGTAACAGTAAAAA--T-GTCAGTG 1143
|||||||| ||||||| | ||||||||| ||| ||||| ||||||| | | ||| |
Sbjct 663 TACAAACGGCCTGCAATTTTATCAAGTGATGCG--AGTAATGGTAAAAACTTGGCCAGCG 720
Query 1144 GCAGCAGTGCTCAGTCTTTTAAGAAAGCAC-TTGGTTTGCTTGCTTCTGCTGACAAGAAA 1202
||| | || |||||||| || ||||| | || | | |||||||||||||||||
Sbjct 721 GCA--A-TGTTCAGTCTTCCAAAAAAGC-CTTTACTCAAATCGCTTCTGCTGACAAGAAG 776
Query 1203 CTGGTGTCATTTGTTAAAGCATTACTTGGAGCTCGTGGTATTTTACTCGAGGAAATGCAA 1262
|||||||||||||| ||||| ||||| |||||||||| | ||| || || |||||||||
Sbjct 777 CTGGTGTCATTTGTGAAAGCCTTACTCGGAGCTCGTGACACTTTGCTTGAAGAAATGCAA 836
Query 1263 AGACTTAGCAAGGCAGTTGGTCAGACAATAGACTTGTCTGACTTTGTATCAAATATGAAC 1322
|| |||||||||||||||||||| ||||| |||||||||||||||||||| | |||| ||
Sbjct 837 AGGCTTAGCAAGGCAGTTGGTCAAACAATTGACTTGTCTGACTTTGTATCCAGTATGGAC 896
Query 1323 AATGTTCAGTTATCT-A---A-C-TCAAC-----AA---G-T--A----CCGGTTCAGGA 1361
|||| || |||||| | | | ||||| || | | | ||||| |||
Sbjct 897 AATGCTCTTTTATCTGACTCAGCTTCAACGGGGAAATCTGTTGAAGTTGAAGGTTCTGGA 956
Query 1362 CAAGGCAAGGAACAAAACAGTCTTGAGAATTTGAATATTACATTTGATTTAACAAGTGAT 1421
||||||||| ||||||||| ||||||||| |||||| ||||||||||| ||||||||
Sbjct 957 CAAGGCAAGCAACAAAACAATCTTGAGAAGTTGAATGGCCCATTTGATTTAGCAAGTGAT 1016
Query 1422 GACTGGCTTCATGAAC-TCTCGAAA-GATCATCTATCCCGTATATTCCACTTACTGGGCA 1479
||||||||||| ||| |||| ||| || |||||||| || | |||||||||||| ||||
Sbjct 1017 GACTGGCTTCA-CAACTTCTC-AAAGGAGCATCTATCTCGCACATTCCACTTACTAGGCA 1074
Query 1480 CCCAACTGCATTATCTTTGGAACACAC-TTCTGGGATTTCACCGGGATAATCACACAAAA 1538
|||| || |||||||||||||| || | ||||| |||||| ||||||||| |||| |||
Sbjct 1075 CCCAGCTCCATTATCTTTGGAATAC-CTTTCTGACATTTCATCGGGATAATTACACGAAA 1133
Query 1539 ATACTT-GAATATCTTCGTGATATCTGGACTAAAGATCGGAGAGCTGAATGGTCAATATG 1597
|| ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1134 AT-CTTGGAATATCTTCGCGATATCTGGACTAAAGATCGAAGAGCGGAATGGTCAATATG 1192
Query 1598 GATGGTGTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAAT-GACAGATA 1656
|||||||||||| |||||||||||||| ||||||||||| | |||||||| ||| || |
Sbjct 1193 GATGGTGTACTCCAAGGTTGAAATGCCACATCATTTTAT--A-AGTGGAATGGAC-GACA 1248
Query 1657 TCTT-AAACCAGAGCGCGCACAAAAGGGCCTCAGGCGTGTT------GAATGAACCGGCC 1709
| || |||||| || | |||||||| | |||| | ||||| |||||| || ||
Sbjct 1249 T-TTCAAACCATAGTTCACACAAAAGAGTCTCAAGTGTGTTGAAGCCGAATGATCCTGCA 1307
Query 1710 CAAATTGCAGCTACACGTGCTGAACTTCACCGTCGGAGTATTGCACAGATGCGGATTAAC 1769
||| ||||||| || || ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1308 CAAGTTGCAGCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGGATAAAC 1367
Query 1770 AACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATC 1829
||||| |||||||||||||||||||| |||| ||||||||||| |||||||| |||||
Sbjct 1368 AACCGGGCAATACAAGACATGCATATATTTGGTGATCCTATGCGAGTTCCTATAGTTATA 1427
Query 1830 ATTGAACGTGTCTT-GAATGCACCAAGACGCACTTTAAGTGATAATTCGTATTTGAGACA 1888
||||||||||| || |||||||||||| || || || |||||||||||||| |||||||
Sbjct 1428 ATTGAACGTGT-TTGGAATGCACCAAGGCGTACGTTCAGTGATAATTCGTACATGAGACA 1486
Query 1889 TATGGATCTG-CTTGATTCTAGCTTGCTAAATGGGCACAAGGATGA-AG-CAGA-AAAAA 1944
| | ||| | | ||||||||||| || |||||||| | ||||| || || ||||
Sbjct 1487 TGTTGAT-AGAATCGATTCTAGCTTACTTAATGGGCATGATGATGAGAGTGGGACGAAAA 1545
Query 1945 CAAAAGTCACTAACTCC-CAGCAAAGTGCCCGTGAACTAAAAATCGTCGTATTTGTTCAT 2003
|| | | || ||| || ||||| | || ||||| || || ||||| || |||||||||
Sbjct 1546 -AACA-TAAC-AAC-CCACAGCATACTGGGCGTGAGCTGAAGATCGTTGTTTTTGTTCAT 1601
Query 2004 GGTTTTCAGGGGCATCACTTGGACTTAAGGCTTGTCCGGAATCAGTGGCTTCTGATAGAT 2063
||||| |||||||||||||| ||| |||||||| | |||||||||||||| || || |||
Sbjct 1602 GGTTTCCAGGGGCATCACTTAGACCTAAGGCTTATACGGAATCAGTGGCTCCTAATTGAT 1661
Query 2064 CCAAAGATAGAGTTTCTCATGTCTGAGGCAAATGAGGAGAAAACACATGGTGATTTCAGG 2123
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1662 CCAAAGATAGAGTTTCTCATGTCTGAGGCAAATGAGGAGAAAACACATGGCGATTTTAGG 1721
Query 2124 GAAATGGGACAAAGGCTCGCTCAAGAAGTTGTTTCTTTCCTT-AAGAGGAAAAAGGATAG 2182
|||||||| || ||||| || || |||||||||||||| || ||||||||||||||||
Sbjct 1722 GAAATGGGTCAGAGGCTTGCGCAGGAAGTTGTTTCTTTT-TTCAAGAGGAAAAAGGATAA 1780
Query 2183 ATATGCAAGACAAGGGCATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGG 2242
| |||| ||| | |||| ||||||| ||| || ||||||||||||| ||||| || ||
Sbjct 1781 ACATGCGAGATATGGGCGCTTGAAAAACATTAAGCTGAGTTTTGTTGGACATTCAATCGG 1840
Query 2243 CAATGTCATCATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGTATCT 2302
|| |||||||||||| | ||||| || |||||||| ||||| ||||||||||||||| |
Sbjct 1841 TAACGTCATCATCAGAGCTGCAATAGCTGATAGTTTGATGGATCCATACAGGAAGTATTT 1900
Query 2303 ACACACATATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTT 2362
|| ||||||||||||||||||||||| |||||||| ||||| |||||| |||| |||||
Sbjct 1901 TCATACATATCTATCGCTTTCGGGTCCACACTTGGGTTATCTATACAGTTCAAATTCCTT 1960
Query 2363 GTTTAATTCCGGGCTTTGGCTACTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCT 2422
||||||||| || |||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 1961 GTTTAATTCTGGACTTTGGCTCCTGAAGAAGTTAAAGAGTACTCAGGTTATTCATCAGCT 2020
Query 2423 TACACTCACAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAA 2482
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 2021 TACACTCACAGATGATCCTGATCTCCAGAATACTTTCTTTTACAAGCTCTGCAAGCAAAA 2080
Query 2483 GACATTGGAGAATTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCC 2542
||| |||| || |||||| |||||||||||||| || ||||||||||| || ||||||||
Sbjct 2081 GACGTTGGGGAGTTTCAAGAATATAATTCTCCTGTCTTCGCCTCAGGATGGGTATGTTCC 2140
Query 2543 ATATCACTCAGCAAGAATCGAGTCATGCCAACCTGCTTCTTTCGACAGCTCGAAAAGGGG 2602
|||||||||||| || || ||||| |||||||| |||||||| |||| ||| ||||| ||
Sbjct 2141 ATATCACTCAGCCAGGATTGAGTCGTGCCAACCAGCTTCTTTTGACAACTCAAAAAGAGG 2200
Query 2603 AGTTGCCTTCTTGGAAATGCTGAATAATTGTCTGGACCAAATACGTGGACCGGTCCCC-G 2661
||||| |||||||| ||||| ||||| ||| |||||||||||||||| || ||||| |
Sbjct 2201 TGTTGCTTTCTTGGAGATGCTTAATAACTGTATGGACCAAATACGTGGGCCA-TCCCCTG 2259
Query 2662 AAGCACCTCATCAGCAAAGGGTGTTCATGCGCTGCGACGTCAACTTTGACATGACCGTT- 2720
|| | ||||| || || || ||||||||||||||||| |||||||| |||| ||| ||
Sbjct 2260 AAACTCCTCACCACCAGAGAGTGTTCATGCGCTGCGATGTCAACTTCGACACAACC-TTG 2318
Query 2721 TATGGTCGTAACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTGGAGTCC 2780
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2319 TATGGTCGTAACCTGAACTCATTCATCGGCCGTGCTGCTCACATCGAGTTCTTGGAGTCT 2378
Query 2781 GATATATTTGCTAGATTTATAATGTGGTCATTCCAAGATCTTTTCCGCTGA 2831
||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 2379 GATATCTTTGCAAGATTCATAATGTGGTCATTCCAAGATCTATTCCGCTGA 2429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115032539900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5