BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58350.1 Length=3046 Score E Sequences producing significant alignments: (Bits) Value Ahg475399 jgi|Araly1|475399|fgenesh2_kg.2__529__AT1G58350.1 3938 0.0 Ahg919770 jgi|Araly1|919770|scaffold_101051.1 2244 0.0 > Ahg475399 jgi|Araly1|475399|fgenesh2_kg.2__529__AT1G58350.1 Length=2968 Score = 3938 bits (2132), Expect = 0.0 Identities = 2476/2637 (94%), Gaps = 43/2637 (2%) Strand=Plus/Plus Query 393 TGAGAAGAACACAGTCAAAGATTTAGAAAGTGATGTGATTTTTTGGGTTCACATATGTTA 452 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 TGAAAAGAACAGAGTCAAAGATTTAGAAAGTGATGTGATTTTTTGGGTTCACATATGTTA 423 Query 453 CACCGTCTTAGATGGTTTATTGGATTGAGTAAAAGAAGTAGAGAAGCCAAGACGCTTGAT 512 ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 424 CACCGTCTTAGATGGTTAATTGGATTGAGTAAAAGAAGTAGACAAGCAAAGACGCTTGAT 483 Query 513 GCGAAACCTTACATATCCAAGGTTAAGCCAGTACTGATGGTTGACACGGTTCAAGAGATT 572 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GCTAAACCTTACATAGCCAAGGTTAAGCCAGTACTGATGGTTGACACGGTTCAAGAGATT 543 Query 573 GCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGATGGTATCAAATC 632 ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 544 GCGATTTATATCCACCGGTTTCATAACCTTGATCTTTTCCAACAAGGATGGTATCAAATC 603 Query 633 AAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTC 692 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 604 AAAATCACCATGAGATGGGAGGATGGAGATAACGTAACTCGGGGTATTCCTTCACGAGTC 663 Query 693 GTGCAATATGAAGCTCCTGATTCCGGTGCTAATGACTCATATGGAGTGTGGAAGATAGTT 752 || || ||||||||| |||| |||||| |||||||||| || |||||||||| ||||||| Sbjct 664 GTTCAGTATGAAGCTACTGAATCCGGTTCTAATGACTCGTACGGAGTGTGGAGGATAGTT 723 Query 753 GATAAAGATAATAGTTTCTTAACACAGCCTTTCCGTATCAAATATGCAAGGCAGGATATT 812 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 724 GATAAAGATAATAGTTTCTTAACACAGCCCTTCCGTATCAAATATGCACGGCAGGATATT 783 Query 813 CGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAGGGGTCAGCTACA 872 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 784 CGTTTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAGGGATCAGCTACA 843 Query 873 TCTGCTGCTATATTAAAGTTTGAGCTCATGTATGCTCCCTCTGTAGATAATGCATCAGCG 932 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 844 TCTGCTGCTATATTAAAGTTTGAGCTCATGTATGCTCCTTCTGTAGATAATGCATCAGCG 903 Query 933 AAGCAATTAGATACTTCTCCTGTTGCAGTTCATGAGTTCCGTATTCCTCCTAAAGCTCTT 992 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 904 AAGCATTTAGATGCTTCTTCTGTTGCAGTTCATGAGTTCCGTATTCCTCCTAAAGCTCTT 963 Query 993 ACAGGCTTGCATTCATACTGTCCAGTGCATTTTGATACACTTCACGCAGTTCTTATTGAT 1052 |||||||||||||| ||||||||||||||||||||||||||||| || |||||| | ||| Sbjct 964 ACAGGCTTGCATTCTTACTGTCCAGTGCATTTTGATACACTTCATGCGGTTCTTGTCGAT 1023 Query 1053 GTGAGTGTCCACATCAGTGTATTGAAATCGGCTGCTTACAAACGACCTGCAAGTCTATCA 1112 ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| Sbjct 1024 GTGAGTGTCCACATCAGTGTATTGAAATCGGCTGCGTATAAACGACCTGCACGTCTATCA 1083 Query 1113 AGTGGCGTAAGTAACAGTAAAAATGTCAGTGGCAGCAGTGCTCAGTCTTTTAAGAAAGCA 1172 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1084 AGTGGCGTAAGTAACAGTAAAAATGTCAGTGGCAGCAGCGCTCAATCTTTTAAGAAAGCA 1143 Query 1173 CTTGGTTTGCTTGCTTCTGCTGACAAGAAACTGGTGTCATTTGTTAAAGCATTACTTGGA 1232 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1144 CTTGGTTTGCTTGCTTCTGCTGATAAGAAACTGGTGTCATTTGTCAAAGCATTACTTGGA 1203 Query 1233 GCTCGTGGTATTTTACTCGAGGAAATGCAAAGACTTAGCAAGGCAGTTGGTCAGACAATA 1292 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1204 GCTCGTGGTATTTTACTCGAGGAAATGCAAAGACTTAGCAAGGCAGTTGGTCAAACGATA 1263 Query 1293 GACTTGTCTGACTTTGTATCAAATATGAACAATGTTCAGTTATCTAACTCAACAAGTACC 1352 ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| || | Sbjct 1264 GACTTGTCTGACTTTGTATCAAACATGAACAATATTCCCTTATCAAACTCAACAATTAAC 1323 Query 1353 GGTTCAGGACAAGGCAAGGAACAAAACAGTCTTGAGAATTTGAATATTACATTTGATTTA 1412 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1324 GGTTCAGGACAAGGCAAGGAACAAAACAGTCTTGAGAAGTTGAATATCACATTTGATTTA 1383 Query 1413 ACAAGTGATGACTGGCTTCATGAACTCTCGAAAGATCATCTATCCCGTATATTCCACTTA 1472 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1384 GCAAGTGATGATTGGCTTCATGAACTCTCGAAGGATCATCTATCCCGTATATTCCACTTA 1443 Query 1473 CTGGGCACCCAACTGCATTATCTTTGGAACACACTTCTGGGATTTCACCGGGATAATCAC 1532 ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1444 CTGGGCACCCAGCTGCATCATCTTTGGAACACATTTCTGGGATTTCACCGGGATAATCAC 1503 Query 1533 ACAAAAATACTTGAATATCTTCGTGATATCTGGACTAAAGATCGGAGAGCTGAATGGTCA 1592 ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1504 ACAAAAATACTGGAATATCTTTGTGATATCTGGACTAAAGATCGAAGAGCTGAATGGTCA 1563 Query 1593 ATATGGATGGTGTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAATGACA 1652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 ATATGGATGGTGTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAATGACA 1623 Query 1653 GATATCTTAAACCAGAGCGCGCACAAAAGGGCCTCAGGCGTGTTGAATGAACCGGCCCAA 1712 ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| Sbjct 1624 GATATCTTAAACCAGAGTGCACACAAAAGGGCCTCAGGCGTATTGAATGAACCGGCCCAA 1683 Query 1713 ATTGCAGCTACACGTGCTGAACTTCACCGTCGGAGTATTGCACAGATGCGGATTAACAAC 1772 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1684 ATTGCAGCTACCCGTGCTGAACTTCACCGTCGAAGTATTGCACAGATGCGGATTAACAAC 1743 Query 1773 CGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATT 1832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1744 CGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATAATT 1803 Query 1833 GAACGTGTCTTGAATGCACCAAGACGCACTTTAAGTGATAATTCGTATTTGAGACATATG 1892 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1804 GAACGTGTCTTGAATGCACCAAGACGCACTTTAAGTGATAATTCGTATCTGAGACATATG 1863 Query 1893 GATCTGCTTGATTCTAGCTTGCTAAATGGGCACAAGGATGAAGCAGAAAAAACAAAAG-T 1951 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 1864 GATCTGCTTGATTCTAGCTTACTTAATGGGCACAAGGATGAAGCAGAAAAAACAAAAGCT 1923 Query 1952 CACTAACTCCCAGCAAAGTGCCCGTGAACTAAAAATCGTCGTATTTGTTCATGGTTTTCA 2011 ||||||||||| |||||||||||||||||||||||||| | | || || Sbjct 1924 -ACTAACTCCCACCAAAGTGCCCGTGAACTAAAAATCGT--T----G-----GG----CA 1967 Query 2012 GGGGCATCACTTGGACTTAAGGCTTGTCCGGAATCAGTGGCTTCTGATAGATCCAAAGAT 2071 ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct 1968 ------TCACTTGGACTTACGGCTTTTCCGGAATCAGTGGCTTTTGATAGATCCAAAGAT 2021 Query 2072 AGAGTTTCTCATGTCTGAGGCAAATGAGGAGAAAACACATGGTGATTTCAGGGAAATGGG 2131 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2022 AGAGTTTCTCATGTCAGAGGCAAATGAGGAGAAAACACATGGCGATTTCAGGGAAATGGG 2081 Query 2132 ACAAAGGCTCGCTCAAGAAGTTGTTTCTTTCCTTAAGAGGAAAAAGGATAGATATGCAAG 2191 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 2082 ACAAAGGCTCGCGCAGGAAGTTGTTTCTTTCCTTAAGAGGAAAAAGGATAGATATGCGAG 2141 Query 2192 ACAAGGG-CATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGGCAATGTCA 2250 ||| ||| || |||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct 2142 ACA-GGGACAATTGAAAAGCATCAAATTGAGTTTTGTCGGGCATTCCATCGGCAATGTCA 2200 Query 2251 TCATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGTATCTACACACAT 2310 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2201 TTATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGTTTCTACACACAT 2260 Query 2311 ATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTTGTTTAATT 2370 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 2261 ATCTATCGCTTTCAGGTCCGCACTTGGGGTATCTATACAGTACAAACTCCTTATTTAATT 2320 Query 2371 CCGGGCTTTGGCTACTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCTTACACTCA 2430 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2321 CCGGGCTTTGGCTCCTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCTTACACTCA 2380 Query 2431 CAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAAGACATTGG 2490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2381 CAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAAGACATTGG 2440 Query 2491 AGAATTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCCATATCACT 2550 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2441 AAAACTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCCATATCACT 2500 Query 2551 CAGCAAGAATCGAGTCATGCCAACCTGCTTCTTTCGACAGCTCGAAAAGGGGAGTTGCCT 2610 |||||||||| || ||||||||||| |||||||||||||||||||||| |||||| |||| Sbjct 2501 CAGCAAGAATTGAATCATGCCAACCAGCTTCTTTCGACAGCTCGAAAAAGGGAGTAGCCT 2560 Query 2611 TCTTGGAAATGCTGAATAATTGTCTGGACCAAATACGTGGACCGGTCCCCGAAGCACCTC 2670 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | Sbjct 2561 TCTTGGAAATGCTGAATAATTGTTTGGACCAAATACGTGGACCGGTACCCGAAGCACCAC 2620 Query 2671 ATCAGCAAAGGGTGTTCATGCGCTGCGACGTCAACTTTGACATGACCGTTTATGGTCGTA 2730 |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 2621 ATCAGCAACGGGTGTTCATGCGCTGCGACGTCAACTTCGACATGACCGTGTATGGCCGTA 2680 Query 2731 ACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTGGAGTCCGATATATTTG 2790 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 2681 ACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTAGAGTCGGATATCTTTG 2740 Query 2791 CTAGATTTATAATGTGGTCATTCCAAGATCTTTTCCGCTGAATTTTG-TACCAAGTTGAA 2849 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 2741 CTAGATTCATAATGTGGTCATTCCAAGATCTTTTCCGCTGAATTTTGGTACCAAGTTGGA 2800 Query 2850 GAAATTTTGGGATTTACAGAGAGATATAAACTGTTGTATATTAACT-T-T-G-TAGATAG 2905 |||||||||||||| |||| ||||||||||||||||||||||| || | | | |||| || Sbjct 2801 GAAATTTTGGGATTCACAGTGAGATATAAACTGTTGTATATTAGCTATATAGATAGACAG 2860 Query 2906 -TT-TT--GTCTACAATTGCTGTCGCGAGAAAGAAAAAACAGATAGTTGGCTTTACAAGC 2961 || || ||||||||||||| | | |||| |||||| ||||||||||| | |||||| Sbjct 2861 ATTGTTTTGTCTACAATTGCTTT-G-GAGA--GAAAAAT-AGATAGTTGGCCT-ACAAGC 2914 Query 2962 AATGTTGTACGTTCTTGTAGATATAGATAGAttttttttttttttctttattttttG 3018 ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 2915 AATGT---ACGTTCTTGTAGATATAGATAGATTTTTTTTTTTTTTTTTTTTTTTTTG 2968 Score = 307 bits (166), Expect = 3e-82 Identities = 238/272 (88%), Gaps = 7/272 (3%) Strand=Plus/Plus Query 1 TTACCCGACAAATTTACTCAAAAATCCGACCTAAAGTTTTGATTTTTATAATCAAATTTC 60 ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| Sbjct 1 TTACCCGACAAATTTACTC--AATTCCGACCTAAAGTTTTGATTTTTATAATCAATTTTT 58 Query 61 CTCGAATTGCTCGACAAAAGTTTATTCCTTTACCATCACAATTTGTAGTTTACCCAGATC 120 |||||||| |||||||||| |||||||||| |||||||||||||||| ||| |||||||| Sbjct 59 CTCGAATTACTCGACAAAATTTTATTCCTTCACCATCACAATTTGTATTTTTCCCAGATC 118 Query 121 CTTTTCTCCTCTGTTTTTTCTTTCGCATTGTTATCTTCAGTGTCTGTCTCATTGTTCCCT 180 ||||| ||||||||| | ||||| ||||||||||||||||||||||| |||||||| || Sbjct 119 CTTTTTTCCTCTGTTCT--CTTTCACATTGTTATCTTCAGTGTCTGTCACATTGTTCTCT 176 Query 181 TTTCCCAGAAGCTGAAAC-AAATCTGttttttttttttttGTTTTGTTTCTGTGAATCTT 239 || ||||||||||||||| ||| | | ||||||| ||| ||||||||||||| | Sbjct 177 TTCCCCAGAAGCTGAAACCAAAAAAAAGCTATATTTTTTT-TTTCGTTTCTGTGAATCGT 235 Query 240 CAGATCTTGATCTGAGAGACCCTACAGATTCT 271 ||||||||||||||||||||| || || |||| Sbjct 236 CAGATCTTGATCTGAGAGACC-TAAAGGTTCT 266 > Ahg919770 jgi|Araly1|919770|scaffold_101051.1 Length=2449 Score = 2244 bits (1215), Expect = 0.0 Identities = 2056/2451 (84%), Gaps = 102/2451 (4%) Strand=Plus/Plus Query 444 CATATGTTACACCGTCTTAGATGGTTTATTGGA-TTGAGTAAAAGAAGTAGAG-AAGCCA 501 |||||||||| ||||||| ||||||| |||||| || || |||||||||| | || | | Sbjct 18 CATATGTTACGCCGTCTTGGATGGTTAATTGGACTT-AGCCAAAGAAGTAG-GCAAACTA 75 Query 502 AGACGCTTGATGC-GAAACCTTACATATCCAAGGTTAAGCCAGTACTGATGGTTGACACG 560 || |||||||||| | | |||||| || ||| ||||||||| || || ||||| ||||| Sbjct 76 AGTCGCTTGATGCTG-AGCCTTACGTAGCCAGGGTTAAGCCGGTGCTAATGGTCGACACA 134 Query 561 GTTCAAGAGATTGCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGA 620 ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 135 GTTCAGGAGATTGCTATCTATATCCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGA 194 Query 621 TGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACT-C-GTGGTA 678 ||||||||||| ||||| | ||||||||||||||||||||||||| || | | |||| | Sbjct 195 TGGTATCAAATAAAAATTAGCATGAGATGGGAGGATGGTGATAAC--AATTCCTGTGGAA 252 Query 679 TTCCTTCACGAGTCGTGCAATATGAAGCTCCTGATTC--CGGTGCTAATGACTCATATGG 736 ||||||||||||| || || |||||||||| |||||| | | | || ||||||||||| Sbjct 253 TTCCTTCACGAGTTGTTCAGTATGAAGCTCTTGATTCAAC-CT-CAAACGACTCATATGG 310 Query 737 AGTGTGGAAGATAGTTGATAAAGATAATAGTTTCTTAACACAGCCTTTCCGTATCAAATA 796 |||||||||||||| |||||| |||| |||||||||||||||||| ||||| || ||||| Sbjct 311 AGTGTGGAAGATAGATGATAAGGATAGTAGTTTCTTAACACAGCCCTTCCGCATTAAATA 370 Query 797 TGCAAGGCAGGATATTCGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATA 856 ||||||||||||| ||||||| || |||||| ||||||||||| |||| |||||| |||| Sbjct 371 TGCAAGGCAGGATGTTCGTCTCTGCATGATGGTCTCATTTACTATGCCTCTGGAAAGATA 430 Query 857 TGAGGGGTCAGCTACATCTGCTGCTATATT-AAAGTTTGAGCTCATGTATGCTCC-CTC- 913 |||||||||||||||||||||| |||||| ||| |||||||| ||||| |||| || Sbjct 431 CGAGGGGTCAGCTACATCTGCTGTTATATTGAAA-TTTGAGCTTTTGTATTCTCCAATCA 489 Query 914 TGTA-GATAATGCATCAGCGAAGCA-ATT-AGATACTTCTCCTGTTGCAGTTCATGAGTT 970 || | ||| || | ||| | | || ||| |||| ||| ||||| ||||| ||||| || Sbjct 490 TGGAGGAT-AT--ACCAGTG-A-CACATTCAGATGCTTGTCCTGCGGCAGTGCATGAATT 544 Query 971 CCGTATTCCTCCTAAAGCTCTTACAGGCTTGCATTCATACTGTCCAGTGCATTTTGATAC 1030 ||||||||||||||||||||| ||||| ||||||| |||||||| ||||| |||||||| Sbjct 545 TCGTATTCCTCCTAAAGCTCTTTCAGGCGTGCATTCTTACTGTCCCGTGCACTTTGATAC 604 Query 1031 AC-TTCACGCAGTTCTTATTGATGTGAGTGTCCACATCAGTGT-ATTGAAATCGGCTGCT 1088 | ||||||| |||||||| ||||| ||||||||| |||| || | ||||||| |||||| Sbjct 605 -CTTTCACGCGGTTCTTATAGATGTAAGTGTCCACGTCAGCGTCA-TGAAATCTGCTGCT 662 Query 1089 TACAAACGACCTGCAAGTCTATCAAGTG--GCGTAAGTAACAGTAAAAA--T-GTCAGTG 1143 |||||||| ||||||| | ||||||||| ||| ||||| ||||||| | | ||| | Sbjct 663 TACAAACGGCCTGCAATTTTATCAAGTGATGCG--AGTAATGGTAAAAACTTGGCCAGCG 720 Query 1144 GCAGCAGTGCTCAGTCTTTTAAGAAAGCAC-TTGGTTTGCTTGCTTCTGCTGACAAGAAA 1202 ||| | || |||||||| || ||||| | || | | ||||||||||||||||| Sbjct 721 GCA--A-TGTTCAGTCTTCCAAAAAAGC-CTTTACTCAAATCGCTTCTGCTGACAAGAAG 776 Query 1203 CTGGTGTCATTTGTTAAAGCATTACTTGGAGCTCGTGGTATTTTACTCGAGGAAATGCAA 1262 |||||||||||||| ||||| ||||| |||||||||| | ||| || || ||||||||| Sbjct 777 CTGGTGTCATTTGTGAAAGCCTTACTCGGAGCTCGTGACACTTTGCTTGAAGAAATGCAA 836 Query 1263 AGACTTAGCAAGGCAGTTGGTCAGACAATAGACTTGTCTGACTTTGTATCAAATATGAAC 1322 || |||||||||||||||||||| ||||| |||||||||||||||||||| | |||| || Sbjct 837 AGGCTTAGCAAGGCAGTTGGTCAAACAATTGACTTGTCTGACTTTGTATCCAGTATGGAC 896 Query 1323 AATGTTCAGTTATCT-A---A-C-TCAAC-----AA---G-T--A----CCGGTTCAGGA 1361 |||| || |||||| | | | ||||| || | | | ||||| ||| Sbjct 897 AATGCTCTTTTATCTGACTCAGCTTCAACGGGGAAATCTGTTGAAGTTGAAGGTTCTGGA 956 Query 1362 CAAGGCAAGGAACAAAACAGTCTTGAGAATTTGAATATTACATTTGATTTAACAAGTGAT 1421 ||||||||| ||||||||| ||||||||| |||||| ||||||||||| |||||||| Sbjct 957 CAAGGCAAGCAACAAAACAATCTTGAGAAGTTGAATGGCCCATTTGATTTAGCAAGTGAT 1016 Query 1422 GACTGGCTTCATGAAC-TCTCGAAA-GATCATCTATCCCGTATATTCCACTTACTGGGCA 1479 ||||||||||| ||| |||| ||| || |||||||| || | |||||||||||| |||| Sbjct 1017 GACTGGCTTCA-CAACTTCTC-AAAGGAGCATCTATCTCGCACATTCCACTTACTAGGCA 1074 Query 1480 CCCAACTGCATTATCTTTGGAACACAC-TTCTGGGATTTCACCGGGATAATCACACAAAA 1538 |||| || |||||||||||||| || | ||||| |||||| ||||||||| |||| ||| Sbjct 1075 CCCAGCTCCATTATCTTTGGAATAC-CTTTCTGACATTTCATCGGGATAATTACACGAAA 1133 Query 1539 ATACTT-GAATATCTTCGTGATATCTGGACTAAAGATCGGAGAGCTGAATGGTCAATATG 1597 || ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 1134 AT-CTTGGAATATCTTCGCGATATCTGGACTAAAGATCGAAGAGCGGAATGGTCAATATG 1192 Query 1598 GATGGTGTACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAAT-GACAGATA 1656 |||||||||||| |||||||||||||| ||||||||||| | |||||||| ||| || | Sbjct 1193 GATGGTGTACTCCAAGGTTGAAATGCCACATCATTTTAT--A-AGTGGAATGGAC-GACA 1248 Query 1657 TCTT-AAACCAGAGCGCGCACAAAAGGGCCTCAGGCGTGTT------GAATGAACCGGCC 1709 | || |||||| || | |||||||| | |||| | ||||| |||||| || || Sbjct 1249 T-TTCAAACCATAGTTCACACAAAAGAGTCTCAAGTGTGTTGAAGCCGAATGATCCTGCA 1307 Query 1710 CAAATTGCAGCTACACGTGCTGAACTTCACCGTCGGAGTATTGCACAGATGCGGATTAAC 1769 ||| ||||||| || || ||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 1308 CAAGTTGCAGCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGGATAAAC 1367 Query 1770 AACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATC 1829 ||||| |||||||||||||||||||| |||| ||||||||||| |||||||| ||||| Sbjct 1368 AACCGGGCAATACAAGACATGCATATATTTGGTGATCCTATGCGAGTTCCTATAGTTATA 1427 Query 1830 ATTGAACGTGTCTT-GAATGCACCAAGACGCACTTTAAGTGATAATTCGTATTTGAGACA 1888 ||||||||||| || |||||||||||| || || || |||||||||||||| ||||||| Sbjct 1428 ATTGAACGTGT-TTGGAATGCACCAAGGCGTACGTTCAGTGATAATTCGTACATGAGACA 1486 Query 1889 TATGGATCTG-CTTGATTCTAGCTTGCTAAATGGGCACAAGGATGA-AG-CAGA-AAAAA 1944 | | ||| | | ||||||||||| || |||||||| | ||||| || || |||| Sbjct 1487 TGTTGAT-AGAATCGATTCTAGCTTACTTAATGGGCATGATGATGAGAGTGGGACGAAAA 1545 Query 1945 CAAAAGTCACTAACTCC-CAGCAAAGTGCCCGTGAACTAAAAATCGTCGTATTTGTTCAT 2003 || | | || ||| || ||||| | || ||||| || || ||||| || ||||||||| Sbjct 1546 -AACA-TAAC-AAC-CCACAGCATACTGGGCGTGAGCTGAAGATCGTTGTTTTTGTTCAT 1601 Query 2004 GGTTTTCAGGGGCATCACTTGGACTTAAGGCTTGTCCGGAATCAGTGGCTTCTGATAGAT 2063 ||||| |||||||||||||| ||| |||||||| | |||||||||||||| || || ||| Sbjct 1602 GGTTTCCAGGGGCATCACTTAGACCTAAGGCTTATACGGAATCAGTGGCTCCTAATTGAT 1661 Query 2064 CCAAAGATAGAGTTTCTCATGTCTGAGGCAAATGAGGAGAAAACACATGGTGATTTCAGG 2123 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1662 CCAAAGATAGAGTTTCTCATGTCTGAGGCAAATGAGGAGAAAACACATGGCGATTTTAGG 1721 Query 2124 GAAATGGGACAAAGGCTCGCTCAAGAAGTTGTTTCTTTCCTT-AAGAGGAAAAAGGATAG 2182 |||||||| || ||||| || || |||||||||||||| || |||||||||||||||| Sbjct 1722 GAAATGGGTCAGAGGCTTGCGCAGGAAGTTGTTTCTTTT-TTCAAGAGGAAAAAGGATAA 1780 Query 2183 ATATGCAAGACAAGGGCATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGG 2242 | |||| ||| | |||| ||||||| ||| || ||||||||||||| ||||| || || Sbjct 1781 ACATGCGAGATATGGGCGCTTGAAAAACATTAAGCTGAGTTTTGTTGGACATTCAATCGG 1840 Query 2243 CAATGTCATCATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGTATCT 2302 || |||||||||||| | ||||| || |||||||| ||||| ||||||||||||||| | Sbjct 1841 TAACGTCATCATCAGAGCTGCAATAGCTGATAGTTTGATGGATCCATACAGGAAGTATTT 1900 Query 2303 ACACACATATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTT 2362 || ||||||||||||||||||||||| |||||||| ||||| |||||| |||| ||||| Sbjct 1901 TCATACATATCTATCGCTTTCGGGTCCACACTTGGGTTATCTATACAGTTCAAATTCCTT 1960 Query 2363 GTTTAATTCCGGGCTTTGGCTACTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCT 2422 ||||||||| || |||||||| |||||||||||||||||||| || ||||| |||||||| Sbjct 1961 GTTTAATTCTGGACTTTGGCTCCTGAAGAAGTTAAAGAGTACTCAGGTTATTCATCAGCT 2020 Query 2423 TACACTCACAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAA 2482 |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| Sbjct 2021 TACACTCACAGATGATCCTGATCTCCAGAATACTTTCTTTTACAAGCTCTGCAAGCAAAA 2080 Query 2483 GACATTGGAGAATTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCC 2542 ||| |||| || |||||| |||||||||||||| || ||||||||||| || |||||||| Sbjct 2081 GACGTTGGGGAGTTTCAAGAATATAATTCTCCTGTCTTCGCCTCAGGATGGGTATGTTCC 2140 Query 2543 ATATCACTCAGCAAGAATCGAGTCATGCCAACCTGCTTCTTTCGACAGCTCGAAAAGGGG 2602 |||||||||||| || || ||||| |||||||| |||||||| |||| ||| ||||| || Sbjct 2141 ATATCACTCAGCCAGGATTGAGTCGTGCCAACCAGCTTCTTTTGACAACTCAAAAAGAGG 2200 Query 2603 AGTTGCCTTCTTGGAAATGCTGAATAATTGTCTGGACCAAATACGTGGACCGGTCCCC-G 2661 ||||| |||||||| ||||| ||||| ||| |||||||||||||||| || ||||| | Sbjct 2201 TGTTGCTTTCTTGGAGATGCTTAATAACTGTATGGACCAAATACGTGGGCCA-TCCCCTG 2259 Query 2662 AAGCACCTCATCAGCAAAGGGTGTTCATGCGCTGCGACGTCAACTTTGACATGACCGTT- 2720 || | ||||| || || || ||||||||||||||||| |||||||| |||| ||| || Sbjct 2260 AAACTCCTCACCACCAGAGAGTGTTCATGCGCTGCGATGTCAACTTCGACACAACC-TTG 2318 Query 2721 TATGGTCGTAACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTGGAGTCC 2780 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 2319 TATGGTCGTAACCTGAACTCATTCATCGGCCGTGCTGCTCACATCGAGTTCTTGGAGTCT 2378 Query 2781 GATATATTTGCTAGATTTATAATGTGGTCATTCCAAGATCTTTTCCGCTGA 2831 ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 2379 GATATCTTTGCAAGATTCATAATGTGGTCATTCCAAGATCTATTCCGCTGA 2429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115032539900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5