BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58370.1
Length=2903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475392 jgi|Araly1|475392|fgenesh2_kg.2__522__AT1G58370.1 4265 0.0
> Ahg475392 jgi|Araly1|475392|fgenesh2_kg.2__522__AT1G58370.1
Length=2887
Score = 4265 bits (2309), Expect = 0.0
Identities = 2701/2892 (93%), Gaps = 19/2892 (1%)
Strand=Plus/Plus
Query 6 ATCGAAATCCAGACAAGAAATCAAGAGAAAGCATGGAGGTTTCAAGAAAAGACAATGAAG 65
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATCAAAATCCAGACAAGAAATTAAGAGAAAGCATGGAGATTTCAAGAAAAGACAATGAAG 60
Query 66 AGCCTGAAAAACAGAACAACAACAATGTAGCATCTATAATTGGTTCTGATCGCACCAATG 125
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 61 AGCCTGAAAAACAGAACAACAACAATGTAGCATCTATTATTGGTTCGGATCGCACCAATG 120
Query 126 TAATTGTGAATCATGACTTCTCTTCCGGGATGCATTCGTGGCATCCGAATTGCTGTGAGG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TAATTGTGAATCATGACTTCTCTTCCGGGATGCATTCGTGGCATCCGAATTGCTGCGAGG 180
Query 186 CCTTTGTTGTCACCGCTGAGTCTAATGTCTCTCACGGTGTTTTAGACCCGTCAAAGTGTG 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CCTTTGTTGTCACCGCTGAGTCTAATGTCTCTCACGGTGTTTTAGACCCGTCAAAGTGCG 240
Query 246 GTAGCTATGTAGTTGTCA-AGAACAGGAAAGAAACTTGGCAAGGCTTGGAGCAAGACATC 304
||| ||| |||| ||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GTACCTACGTAGCTGTCACA-AACCGGAAAGAAACTTGGCAAGGCTTGGAGCAAGACATC 299
Query 305 ACAAACAGAGTAAAACCTTGTAGTCTTTATAAAGTTTCAGCAACTGTTGCTGTCTCTGGA 364
|||| |||||| ||||||||| ||| |||||||||||| |||||||||||||| ||||||
Sbjct 300 ACAAGCAGAGTGAAACCTTGTTGTCCTTATAAAGTTTCTGCAACTGTTGCTGTGTCTGGA 359
Query 365 CCGGTGCATGGATTGGTGGAGGTTATGGCCACCTTGAAGCTCGAAAGCCAACAATCTCAA 424
|| || || |||||||| |||||||||||||||||||||||||||| | |||||| |||
Sbjct 360 CCTGTTCAAGGATTGGTAGAGGTTATGGCCACCTTGAAGCTCGAAAACGGACAATCGCAA 419
Query 425 ACAAACTATCAGTTCATAGCAAAAACTTGTGTCTTCAAGGAGAAGTGGGTGAGACTAGAA 484
|||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||
Sbjct 420 ACAAACTATCAGTTTATCGCAAAAGCTTGTGTCTTCAAGGAGAAGTGGGTGACACTAGAA 479
Query 485 GGCATGTTCTCGTTACCTAGCTTACCAGAAAAAGTTGTATTCTATTTGGAAGGCCCGTCA 544
|||||||| |||||||| ||| || ||||||||||||| |||||||||||||||||||||
Sbjct 480 GGCATGTTTTCGTTACCGAGCATAACAGAAAAAGTTGTTTTCTATTTGGAAGGCCCGTCA 539
Query 545 CCGGGGATCGATCTTCTCATACAGTCTGTTACCATCCACCGCGAAAGCGAGCCTGAGCTG 604
|||||||||||||| ||||||||||| |||||||| || |||||||||| | |||||||
Sbjct 540 CCGGGGATCGATCTCCTCATACAGTCAGTTACCATTCATAGCGAAAGCGAACTTGAGCTG 599
Query 605 GAGCGTGTTACTGCTGAAGATGAGACTATTGTAGTGAACCCAAACTTTGAAGATGGACTA 664
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACCGTGTTACTGCTGAAGATGAGACTATTGTAGTGAACCCAAACTTTGAAGATGGACTA 659
Query 665 AATAACTGGTCTGGGAGAAGCTGCAAGATTGTGTTGCATGACTCAATGGCTGATGGAAAG 724
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACTAACTGGTCTGGGAGAAGCTGCAAGATTGTGTTGCATGACTCAATGGCTGATGGAAAG 719
Query 725 ATAGTACCAGAATCCGGGAAGGTTTTCGCTTCGGCTACAGAACGCACGCAGAACTGGAAC 784
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 720 ATAGTACCAGAATCCGGGAAAGTTTTTGCTTCGGCTACAGAACGCACGCAGAACTGGAAC 779
Query 785 GGTATTCAGCAAGAGATCACCGGGAAAGTTCAGAGAAAACGTGTATATGAAGCAACCGCG 844
|||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 780 GGTATTCAACAAGAGATCACCGGGAAAGTTCAGAGAAAACGTGCCTATGAGGCAACCGCG 839
Query 845 GTTGTTCGTATTTATGGAAACAATGTGACAACAGCTACTGTACAAGCTACTCTATGGGTC 904
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 840 GTTGTTCGTATTTATGGAAACAATGTGACTACTGCTACAGTACAAGCTACTCTATGGGTC 899
Query 905 CAAAATCCAAATCAACGTGATCAATACATTGGCATTTCCACTGTGCAAGCAACAGACAAA 964
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 CAGAATCCAAATCAACGTGATCAATACATTGGCATTTCCACTGTGCAGGCAACAGACAAA 959
Query 965 GAGTGGATACATTTGAAAGGGAAGTTCCTCCTCAACGGTTCTGCATCGCGGGTAGTCATT 1024
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GAGTGGGTACATTTAAAAGGGAAGTTCCTCCTCAACGGTTCTGCGTCGCGGGTAGTCATT 1019
Query 1025 TACATCGAAGGTCCACCTCCAGGAACCGATATTCTTCTCAATAGCTTAACTGTAAAACAC 1084
||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 1020 TACATTGAAGGTCCGCCTCCAGGAACAGATATTCTCCTCAATAGCTTCACTGTGAAACAC 1079
Query 1085 GCCGAGAAAATTCCTCCTTCACCACCCCCGTCTATTGAGAATCCTGCATTTGGAGTAAAC 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GCCGAGAAAATTCCTCCTTCACCACCCCCGTCTATTGAGAATCCTGCATTTGGGGTAAAC 1139
Query 1145 ATACTCACAAATAGTCATTTAAGTGATGATACGACCAACGGATGGTTTTCATTAGGGAAC 1204
|||||||||||||| || |||| |||||||||||||||||| |||||| |||||||||||
Sbjct 1140 ATACTCACAAATAGCCACTTAAATGATGATACGACCAACGGCTGGTTTCCATTAGGGAAC 1199
Query 1205 TGCACGCTAAGTGTGGCGGAAGGGTCACCTCGGATCCTTCCTCCGATGGCAAGAGACTCG 1264
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1200 TGCACGCTAAGTGTCGCGGAAGGCTCACCTCGAATCCTTCCTCCGATGGCAAGAGACTCG 1259
Query 1265 CTTGGAGCACACGAGCGTCTAAGTGGCCGCTATATACTTGTGACTAACCGAACACAGACA 1324
||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1260 CTTGGCCCACGCGAGCCTCTAAGTGGCCGCTATATACTCGCGACTAACCGAACACAGACA 1319
Query 1325 TGGATGGGTCCAGCACAAATGATCACTGATAAACTTAAGCTTTTCTTGACGTACCAAATA 1384
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1320 TGGATGGGTCCAGCACAAATGATCACTGATAAACTTAAGCTTTTCTTGACATACCAAATA 1379
Query 1385 TCAGTTTGGGTCAAAGTTGGTTCTGGCATTAATAGTCCGCAAAATGTTAATGTCGCACTT 1444
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1380 TCAGTTTGGGTCAAAGTCGGTTATGGCATTAATAGTCCACAAAATGTTAATGTCGCACTT 1439
Query 1445 GGTATCGATAGCCAATGGGTAAATGGAGGACAGGTAGAGATCAACGATGATAGATGGCAT 1504
||||||||| ||||||||||||| |||||||| || ||||||||| ||||||||||||||
Sbjct 1440 GGTATCGATGGCCAATGGGTAAACGGAGGACAAGTCGAGATCAACAATGATAGATGGCAT 1499
Query 1505 GAAATTGGCGGTTCTTTTCGAATTGAGAAGAACCCATCTAAGGCTTTGGTTTACGTTCAA 1564
||| ||||||||||||| ||||| |||||| | |||||||||||||||||||| ||||||
Sbjct 1500 GAAGTTGGCGGTTCTTTCCGAATCGAGAAGCAGCCATCTAAGGCTTTGGTTTATGTTCAA 1559
Query 1565 GGCCCTTCTTCCGGCATTGATCTCATGGTCGCGGGATTGCAGATTTTTCCC-GTCGATCG 1623
||||||||||||||||||||||| ||||| || |||||||||| ||||||| ||||||||
Sbjct 1560 GGCCCTTCTTCCGGCATTGATCTAATGGTTGCTGGATTGCAGA-TTTTCCCGGTCGATCG 1618
Query 1624 ACTCGCGAGAATAAAACATTTGAAAAGACAATGTGACAAGATCCGTAAGCGTGACGTTAT 1683
||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1619 ACTTGCGAGAATCAAACATTTGAAAAGACAATGTGACAAGATCCGTAAGCGCGATGTTAT 1678
Query 1684 CCTCAAGTTTGCTGGTGTTGATTCTAGCAAATTTTCTGGAGCTA-GTGTTAGAGTTCGAC 1742
|||||| ||| |||||||||||||||||||||| |||||||||| | |||| ||||||||
Sbjct 1679 CCTCAAATTTTCTGGTGTTGATTCTAGCAAATTGTCTGGAGCTACG-GTTATAGTTCGAC 1737
Query 1743 AGATAAGAAATAGCTTCCCGGTGGGGACTTGCATTAGCAGATCAAATATAGATAACGAAG 1802
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1738 AAATAAGAAACAGCTTCCCGGTGGGGACTTGCATAAGCAGATCAAATATAGATAACGAAG 1797
Query 1803 ATTTCGTCGATTTCTTCTTAAAGAACTTTAATTGGGCGGTTTTCGCTAACGAATTGAAAT 1862
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ATTTCGTCGATTTCTTCTTGAAGAACTTTAATTGGGCGGTTTTCGCTAACGAATTGAAAT 1857
Query 1863 GGTACTGGACGGAACCAGAACAAGGGAAGCTTAATTACCAAGACGCAGATGATATGCTCA 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GGTACTGGACGGAACCAGAACAAGGGAAGCTTAATTACCAAGACGCAGATGATATGCTCA 1917
Query 1923 ACTTGTGCAGTAGCAACAACATAGAAACAAGAGGACATTGTATCTTTTGGGAAGTTCAAG 1982
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 ACTTGTGTAATAGCAACAACATAGAAACAAGAGGACATTGTATCTTTTGGGAAGTTCAAG 1977
Query 1983 CAACTGTTCAGCAATGGATCCAAAATATGAACCAAACCGACTTAAACAACGCGGTGCAAA 2042
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 1978 CAACTGTTCAGCAATGGATCCAAAACATGAACCAAACCGACTTAAATAACGCGGTCCAAA 2037
Query 2043 ACCGCCTAACCGATCTTCTAAACCGGTACAAGGGAAAATTCAAACATTACGACGTGAACA 2102
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2038 ACCGCCTAACCGATCTTCTAAACCGGTACAAGGGGAAATTCAAACATTACGACGTGAACA 2097
Query 2103 ATGAGATGTTACATGGATCATTCTACCAAGATAAGCTAGGCAAAGACATTAGAGTCAACA 2162
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || |||||||
Sbjct 2098 ATGAGATGTTACACGGATCATTCTATCAAGACAAGCTAGGAAAAGACATAAGGGTCAACA 2157
Query 2163 TGTTCAAAACCGCGCACCAACTAGACCCATCTGCGACATTGTTTGTGAACGACTACCACA 2222
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2158 TGTTCAAGACCGCGCACCAACTAGACCCTTCTGCGACATTGTTCGTGAACGACTACCATG 2217
Query 2223 TAGAAGACGGGTGTGACCCAAAATCCTGCCCCGAAAAGTACACGGAACAGATTCTTGACT 2282
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 2218 TAGAAGACGGGTGTGACCCAAAATCCTGCCCTGAAAAGTACACGGAACTCATTCTTGACC 2277
Query 2283 TGCAAGAAAAGGGTGCGCCGGTAGGAGGAATCGGGATTCAAGGCCATATCGACAGTCCGG 2342
||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||| |
Sbjct 2278 TGCAAGAAAAGGGTGCGCCAGTAGGCGGAATCGGGATTCAGGGCCATATTGATAGTCCAG 2337
Query 2343 TGGGTCCAATTGTATGTTCAGCCCTAGACAAACTAGGAATTCTCGGTTTACCAATATGGT 2402
| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 2338 TAGGTCCAATCGTATGTTCAGCTCTAGACAAACTAGGAATCCTCGGTTTACCGATATGGT 2397
Query 2403 TCACAGAATTGGATGTCTCCTCGGTCAATGAGCACATAAGGGCAGATGATTTGGAAGTAA 2462
|||| ||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2398 TCACGGAAACGGATGTGTCCTCTGTCAATGAGCACATAAGGGCAGATGATTTAGAAGTAA 2457
Query 2463 TGATGTGGGAAGCTTTTGGACATCCCGCGGTGGAAGGTATAATGTTATGGGGATTTTGGG 2522
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2458 TGATGTGGGAAGCTTTCGGACATCCGGCGGTCGAAGGTATAATGTTATGGGGATTTTGGG 2517
Query 2523 AGTTGTTTATGAGCAGAGACAACTCTCATTTGGTGAATGCAGAAGGAGATGTTAATGAAG 2582
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 AATTGTTCATGAGCAGAGACAACTCTCATTTGGTGAATGCAGAAGGAGATGTTAATGAAG 2577
Query 2583 CTGGTAAAAGGTTTTTGGCTGTGAAAAAAGATTGGCTCTCTCATGCTAATGGACATATTG 2642
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2578 CTGGCAAAAGGTTTTTGGCTGTGAAAAAAGATTGGCTCTCTCATGCCAATGGACATGTTG 2637
Query 2643 ATCAAAACGGTGCGTTTCCGTTTAGAGGGTATAGTGGAAATTATGCCGTTGAAGTGATTA 2702
| ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 2638 ACCAAAACGGTGCGTTTCCGTTTAGAGGGTATAATGGAAACTATGCCATTGAAGTGATTA 2697
Query 2703 CTACTTCATCTAGTAAGGTTCTGAAGACGTTTGGTGTTGATAAGGAAGATTCGTCTCAGG 2762
|||||||||||| ||||||||| || ||||||| |||||| |||||||||||||||||||
Sbjct 2698 CTACTTCATCTACTAAGGTTCTAAAAACGTTTGTTGTTGAAAAGGAAGATTCGTCTCAGG 2757
Query 2763 TTATTACTGTTGATCTTCAAGGTTTGTGAT--TGT-GACGCTTGTACATGTG--C-T--A 2814
|||||||||||||||||||||| ||||||| | | | | ||||||||||| | | |
Sbjct 2758 TTATTACTGTTGATCTTCAAGGGTTGTGATGCTTTTGT-G-TTGTACATGTGTTCATGTA 2815
Query 2815 ---ATGTATGTCTAGATTTCCAGTTTGCTGAAACTGTGGTGTTTATTTATTGAAAACAAA 2871
|||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||
Sbjct 2816 TGTATGTATGTCTAGATTTAGAATTTGCTGAAACTGTGGTGTTTGTTTATTCAAAACAAA 2875
Query 2872 ATAAAAGTCTCT 2883
| ||||||||||
Sbjct 2876 AAAAAAGTCTCT 2887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109585634865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5