BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58420.1
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475391 jgi|Araly1|475391|fgenesh2_kg.2__521__AT1G58420.1 961 0.0
> Ahg475391 jgi|Araly1|475391|fgenesh2_kg.2__521__AT1G58420.1
Length=671
Score = 961 bits (520), Expect = 0.0
Identities = 632/682 (93%), Gaps = 24/682 (4%)
Strand=Plus/Plus
Query 18 CAAAACAAAAAATGGGAAAGAGAGGACAAAAACAGAACAGGTTCTTGAGAATCGTCACCA 77
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CAAAAAAAAAAATGGGAAAGAGAGGACAAAAACAGAACAAGTTCTTGAGAATCGTCACCA 60
Query 78 TGCCTCTTAAAGTTCTATGCAAAGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGTG 137
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 61 TGCCTCTAAAAGTTCTATGCAAGGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGCG 120
Query 138 CAGCTCGAACTCACTACTCTTCAGCCGTCGACGCCGCATCCGTTCCATTTCCGAGAAGCC 197
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 121 CAGCTCGAACTCACTACTCTTCAGCCGTGGACGCCGCCTCCGTTCCCTTTCCGAGAAGCC 180
Query 198 GGAGTACTTCCTCCGCCTTCTCTTCCTCTGCCTCTTCTCGGAGAAGATCTTCGGATTTCA 257
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 181 GGAGTACTTCCTCCGCCTTCTCCTCCTCTGCCTCTTCTCGGAGAAGATCTTCCGATTTCA 240
Query 258 CTTTCGACGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGTTAGGAGTTTAGGTCATA 317
||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 241 CTTTCGATGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGCTAGAAGTTTGGGTCATA 300
Query 318 AGAATGAGATTGACATGATCATACAACAACAGC-A-A----CAGCAGCAGCAGCAACGGC 371
||||||||||||||||||||||||| ||||||| | | |||||||||||||| ||||
Sbjct 301 AGAATGAGATTGACATGATCATACACCAACAGCTACAGCTTCAGCAGCAGCAGCAGCGGC 360
Query 372 AGGAGAATCGCGTTGCGATGGGAGCGG-T----TA-CGGTTAAAGGCGGTTTGCCTAAGA 425
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 361 AGGAGAATCGCGTTGCGATGGGAGCGGTTGCGGTAGCGGTTAAAGGCGGTTTGCCTAAGA 420
Query 426 GCTCGAGTGTTGGGATGACAATGGCTAGGATTGATGAAGAAGATGAAGAAGAAGGATCTG 485
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GCTCGAGTGTTGGGATGACAATGGCGAGGATTGATGAAGAAGATGAAGAAGAAGGATCTT 480
Query 486 TAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTA 540
Query 546 CTATTAGAGGATCCAAGTTTTAATATATACTACTAATTAATTGTCAGTTTTATTTTTCTT 605
|||| |||||||| ||||||||||||| ||| | | |||||||| ||| |||||||||
Sbjct 541 CTATAAGAGGATCTAAGTTTTAATATA--CTA--ACT-AATTGTCAATTT-ATTTTTCTT 594
Query 606 TTGATTTAATTTAAAAGAATGTTCCTAATTATA-CATGTTTATGGAATTATTTTGATGTA 664
||||||| | |||||||||||| || | | | |||| |||||||||||||||||||||
Sbjct 595 TTGATTT--T--AAAAGAATGTTCTTA-TAAGAACATGGTTATGGAATTATTTTGATGTA 649
Query 665 AAGTTACTGTCATGGATTTATA 686
||||||||||||||||||||||
Sbjct 650 AAGTTACTGTCATGGATTTATA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27257885655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5