BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G58420.1 Length=740 Score E Sequences producing significant alignments: (Bits) Value Ahg475391 jgi|Araly1|475391|fgenesh2_kg.2__521__AT1G58420.1 961 0.0 > Ahg475391 jgi|Araly1|475391|fgenesh2_kg.2__521__AT1G58420.1 Length=671 Score = 961 bits (520), Expect = 0.0 Identities = 632/682 (93%), Gaps = 24/682 (4%) Strand=Plus/Plus Query 18 CAAAACAAAAAATGGGAAAGAGAGGACAAAAACAGAACAGGTTCTTGAGAATCGTCACCA 77 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 CAAAAAAAAAAATGGGAAAGAGAGGACAAAAACAGAACAAGTTCTTGAGAATCGTCACCA 60 Query 78 TGCCTCTTAAAGTTCTATGCAAAGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGTG 137 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 61 TGCCTCTAAAAGTTCTATGCAAGGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGCG 120 Query 138 CAGCTCGAACTCACTACTCTTCAGCCGTCGACGCCGCATCCGTTCCATTTCCGAGAAGCC 197 |||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 121 CAGCTCGAACTCACTACTCTTCAGCCGTGGACGCCGCCTCCGTTCCCTTTCCGAGAAGCC 180 Query 198 GGAGTACTTCCTCCGCCTTCTCTTCCTCTGCCTCTTCTCGGAGAAGATCTTCGGATTTCA 257 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 181 GGAGTACTTCCTCCGCCTTCTCCTCCTCTGCCTCTTCTCGGAGAAGATCTTCCGATTTCA 240 Query 258 CTTTCGACGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGTTAGGAGTTTAGGTCATA 317 ||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||| Sbjct 241 CTTTCGATGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGCTAGAAGTTTGGGTCATA 300 Query 318 AGAATGAGATTGACATGATCATACAACAACAGC-A-A----CAGCAGCAGCAGCAACGGC 371 ||||||||||||||||||||||||| ||||||| | | |||||||||||||| |||| Sbjct 301 AGAATGAGATTGACATGATCATACACCAACAGCTACAGCTTCAGCAGCAGCAGCAGCGGC 360 Query 372 AGGAGAATCGCGTTGCGATGGGAGCGG-T----TA-CGGTTAAAGGCGGTTTGCCTAAGA 425 ||||||||||||||||||||||||||| | || |||||||||||||||||||||||| Sbjct 361 AGGAGAATCGCGTTGCGATGGGAGCGGTTGCGGTAGCGGTTAAAGGCGGTTTGCCTAAGA 420 Query 426 GCTCGAGTGTTGGGATGACAATGGCTAGGATTGATGAAGAAGATGAAGAAGAAGGATCTG 485 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 GCTCGAGTGTTGGGATGACAATGGCGAGGATTGATGAAGAAGATGAAGAAGAAGGATCTT 480 Query 486 TAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTA 540 Query 546 CTATTAGAGGATCCAAGTTTTAATATATACTACTAATTAATTGTCAGTTTTATTTTTCTT 605 |||| |||||||| ||||||||||||| ||| | | |||||||| ||| ||||||||| Sbjct 541 CTATAAGAGGATCTAAGTTTTAATATA--CTA--ACT-AATTGTCAATTT-ATTTTTCTT 594 Query 606 TTGATTTAATTTAAAAGAATGTTCCTAATTATA-CATGTTTATGGAATTATTTTGATGTA 664 ||||||| | |||||||||||| || | | | |||| ||||||||||||||||||||| Sbjct 595 TTGATTT--T--AAAAGAATGTTCTTA-TAAGAACATGGTTATGGAATTATTTTGATGTA 649 Query 665 AAGTTACTGTCATGGATTTATA 686 |||||||||||||||||||||| Sbjct 650 AAGTTACTGTCATGGATTTATA 671 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27257885655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5