BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58430.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1 1855 0.0
Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1 1295 0.0
Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371 1260 0.0
> Ahg475390 jgi|Araly1|475390|fgenesh2_kg.2__520__AT1G58430.1
Length=1276
Score = 1855 bits (1004), Expect = 0.0
Identities = 1159/1233 (94%), Gaps = 13/1233 (1%)
Strand=Plus/Plus
Query 79 CTT-TAATTCCAT-a-aaaacaaaaacaaaaaTATAATGT-GGACTTCTAAAACCATAAG 134
||| ||| ||||| | |||||||||| |||||| ||||| || ||||||| |||||||
Sbjct 49 CTTATAAATCCATGACCAAACAAAAACCAAAATAAAATGTCGG-CTTCTAATACCATAAC 107
Query 135 CTTCACTCTCTTCATCACAACAACACTTCTCGGGTCCTGCAACGCATCTGCAAAGGCCAA 194
|||||||||||||||||||| ||| || |||| ||||||||||||||| |||||||||||
Sbjct 108 CTTCACTCTCTTCATCACAATAACGCTACTCGCGTCCTGCAACGCATCCGCAAAGGCCAA 167
Query 195 AACGCAACCGCTATTCCCAGCGATTCTAATCTTTGGTGATTCAACAGTCGACACAGGCAA 254
|||||||||||| || ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 168 AACGCAACCGCTTTTTCCAGCGATTCTAATCTTCGGCGATTCAACTGTCGACACAGGCAA 227
Query 255 CAATAATTACCCTTCACAAACAATCTTCAGAGCTAAACATGTTCCTTACGGAATTGATCT 314
|||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 228 CAATAACTACCCTTCACAAACAATCTTTAGAGCTAAACATGTTCCGTACGGTATTGATCT 287
Query 315 CCCAAACCACTCACCTAACGGAAGATTCTCAAACGGGAAAATTTTCTCCGACATAATCGC 374
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 288 CCCAAACCACTCACCTAACGGAAGATTCTCAAACGGAAAAATTTTCTCGGACATAATCGC 347
Query 375 AACCAAACTCAACATCAAACAGTTTGTTCCTCCTTTCTTACAACCAAATCTCACCGACCA 434
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 348 AACCAAACTCAACATCAAACAGTTTGTTCCTCCCTTCTTACAACCAAATCTCACCGACCA 407
Query 435 AGAAATTGTAACCGGAGTCTGTTTCGCATCAGCAGGTGCCGGTTACGATGACCA-AACCA 493
|||||||||||||||||||||||| |||||||| ||||| ||||||||||| || ||||
Sbjct 408 AGAAATTGTAACCGGAGTCTGTTTTGCATCAGCTGGTGCGGGTTACGATGA-CAGTACCA 466
Query 494 GTCTCACGACACAAGCGATTCGTGTCTCGGAACAACCAAATATGTTCAAGAGTTACATTG 553
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GTCTCACGACACAAGCCATTCGTGTCTCGGAACAACCAAATATGTTCAAGAGTTACATTG 526
Query 554 CTCGTCTTAAGAGTATCGTAGGAGACAAGAAAGCCATGAAGATCATAAACAATGCTTTGG 613
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 527 CTCGTCTTAAGAGTATCGTAGGTGACAAGAAAGCCATGAAGATCATAAACAATGCTTTGG 586
Query 614 TGGTTGTGAGTGCAGGGCCTAATGATTTCATCTTGAATTATTACGAGGTTCCCTCATGGC 673
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 587 TGGTTGTTAGTGCAGGGCCTAATGATTTCATCTTGAATTATTACGATGTTCCCTCATGGC 646
Query 674 GTCGCATGTATCCTAGCATTTCTGATTACCAAGATTTTGTTCTTAGTAGGCTTAACAATT 733
||||| |||||||||| |||||||||||||||||||| || |||| ||||||||||||||
Sbjct 647 GTCGCGTGTATCCTAGTATTTCTGATTACCAAGATTTCGTGCTTAATAGGCTTAACAATT 706
Query 734 TCGTGAAGGAGCTTTACAGCCTAGGTTGCCGGAAAATTTTGGTCGGAGGTTTACCGCCAA 793
||||| |||| |||||||| |||||||||||||||||| |||| ||||| ||||||||||
Sbjct 707 TCGTGCAGGAACTTTACAGTCTAGGTTGCCGGAAAATTCTGGTTGGAGGGTTACCGCCAA 766
Query 794 TGGGATGTTTACCGATTCAAATGACTGCTCAATTCCGCAACGTCCTAAGGTTTTGCTTGG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGGGATGTTTACCGATTCAAATGACTGCTCAATTCCGCAACGTCCTAAGGTTTTGCTTGG 826
Query 854 AACAAGAGAACAGAGACTCTGTTTTATACAATCAGAAACTTCAGAAGCTCTTACCTCAGA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 827 AACAAGAGAACAGAGACTCTGTTTTATACAATCAGAAACTTCAGAAGCTCTTATATCAGA 886
Query 914 -CACAAGCATCTCTTACAGGAAGCAAGATCCTTTACTCTGATGTCTATGACCCTATGATG 972
| ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 887 TCG-AAGTATCTCTTACGGGAAGCAAGATCCTTTACTCTAATGTCTATGACCCTATGATG 945
Query 973 GAGATGCTCCAAAACCCTAGCAAATACGGATTTAAAGAGACGACGAGAGGATGTTGTGGA 1032
|||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 946 GAGATGATCCAAAACCCTAGCAAATACGGGTTTAAAGAGACGAGGAGAGGATGTTGTGGA 1005
Query 1033 ACAGGGTTCTTGGAGACGAGCTTCATGTGTAATGCTTATTCTTCCATGTGTCAGAATCGC 1092
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1006 ACAGGGTTCTTGGAGACGAGCTTCATGTGTAATGCTTATTCTCCCATGTGTCAGAATCGC 1065
Query 1093 TCGGAGTTTCTGTTCTTTGACTCGATTCATCCATCTGAAGCTACCTACAATTACATTGGT 1152
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1066 TCGGAGTTTCTGTTCTTTGACTCGATTCACCCATCAGAAGCTACCTATAATTACATTGGC 1125
Query 1153 AATGTTCTGGATACTAAGATTCGTGGGTGGCTTAAGGCTTAAGTTATCAAGATTTGCAAA 1212
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1126 AATGTTCTGGATACTAAGATTCGTGGGTGGCTTAAGGCTTAAGTTATCACGATTTTCAAA 1185
Query 1213 GATTGAACAAAATTATCTGTTTCATAATGTGACTATTTGTGGACT-TCGTTTGTTTATCA 1271
||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||| ||||
Sbjct 1186 GATTGAACAAAAT-ATCTGTTTCATAATGCGACTATTTGTGGACTAT-GTTTGTTAATCA 1243
Query 1272 ACTAT-TAACTTTGGCTCTTACTGGCGCTTTAA 1303
||||| ||||||||||||||||||| |||||||
Sbjct 1244 ACTATATAACTTTGGCTCTTACTGGTGCTTTAA 1276
> Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1
Length=1181
Score = 1295 bits (701), Expect = 0.0
Identities = 1036/1195 (87%), Gaps = 34/1195 (3%)
Strand=Plus/Plus
Query 111 AATGTGGACTTCTAAAACCATAAGCTTCACTCTCTTCATCACAACAACACT-TCTCGGGT 169
||||| ||||||||||||||||| ||| ||||| || ||| |||||||||| | ||| ||
Sbjct 2 AATGTCGACTTCTAAAACCATAACCTTAACTCTTTTTATCGCAACAACACTAT-TCGCGT 60
Query 170 CCTGCAACGCA-TCTGCAAAGGCCAA-AACGCAACCGCTATTCCCAGCGATTCTAATCTT 227
||||||||||| || ||||| | ||| ||| ||||||| ||||||||||||||||||||
Sbjct 61 CCTGCAACGCAGTC-GCAAACG-CAACAACAAAACCGCTCTTCCCAGCGATTCTAATCTT 118
Query 228 TGGTGATTCAACAGTCGACACAGGCAACAATAATTACCCTTCACAAACAATCTTCAGAGC 287
|| |||||||| ||||||||||||||||| || ||||||| || |||||||||||||||
Sbjct 119 CGGCGATTCAACCGTCGACACAGGCAACAACAACTACCCTTTACCAACAATCTTCAGAGC 178
Query 288 TAAACA-TGTTCCTTACGGAATTGATCTCCCAAACCACTCACCTAACGGAAGATTCTCAA 346
| |||| | |||||||||| || ||||| ||| | | | ||||||||||||||||||
Sbjct 179 TGAACACT-TTCCTTACGGCATGGATCTTCCAGATGGCAAAGCTAACGGAAGATTCTCAA 237
Query 347 ACGGGAAAA-TTTTCTCCGACATAATCGCAACCAAACTCAACATCAAACAGTTTGTTCCT 405
|| |||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 238 AC-GGAAAACTTATCTCCGACATAATCGCAACCAAACTCAACATCAAAGAGTTTATTCCT 296
Query 406 CCTTTCTTACAACCAAATCTCACCGACCAAGAAATTGTAACCGGAGTCTGTTTCGCATCA 465
||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 297 CCTTTCTTACAACCAAATCTCTCCGACCAAGACATTCTAACCGGAGTCTGTTTCGCATCA 356
Query 466 GCAGGTGCCGGTTACGATGACCAAACCAGTCTCACGACACAAGCGATTCGTGTCTCGGAA 525
|| |||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||
Sbjct 357 GCTGGTGCCGGTTACGACGACCTAACCAGTCTCTCCACACAAGCCATTCGTGTCTCGGAA 416
Query 526 CAACCAAATATGTTCAAGAGTTACATTGCTCGTCT-TAAGAGTATCGTAGGAGACAAGAA 584
|||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 417 CAACCAAACATGTTCAAGAGTTACATTGCTCGTCTCAAAG-GTATCGTGGGAGACAAGAA 475
Query 585 AGCCATGAAGATCATAAACAATGCTTTGGTGGTTGTGAGTGCAGGGCCTAATGATTTCAT 644
||| ||| ||||||||||||||||||| |||||| | |||||||||||||| ||||||||
Sbjct 476 AGCAATGGAGATCATAAACAATGCTTTAGTGGTTATCAGTGCAGGGCCTAACGATTTCAT 535
Query 645 CTTGAATTATTACGAGGTTCCCTCATGGCGTCGC-ATGTATCCTAGCATTTCTGATTACC 703
||||| |||||||| |||||||| |||||| | | ||||||| |||||||| |||||
Sbjct 536 TTTGAACTATTACGATATTCCCTCAAGGCGTCTCGA-GTATCCTTTCATTTCTGGTTACC 594
Query 704 AAGATTTTGTTCTTAGTAGGCTT-AACAATTTCGTGAAGGAGCTTTACAGCCTAGGTTGC 762
|||| ||| |||||| |||||| || ||| ||||| |||||||||||| ||||||| |
Sbjct 595 AAGACTTTATTCTTAAAAGGCTTGAA-AATATCGTGCGGGAGCTTTACAGTCTAGGTTCC 653
Query 763 CGGAAAATTTTGGTCGGAGGTTTACCGCCAATGGGATGTTTACCGATTCAAATGACTGCT 822
||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||||| |
Sbjct 654 CGGAATATTTTGGTTGGAGGTTTGCCGCCAATGGGGTGTTTACCGATCCACATGACTGTT 713
Query 823 CAATTCCGCAACGTCCTAAGGTTTTGCTTGGAACAAGAGAACAGAGACTCTGTTTTATAC 882
||||||||||||| | || || |||||||||||| | |||||||||||||||||||||
Sbjct 714 AAATTCCGCAACGTTTTTAGATTCTGCTTGGAACAACATAACAGAGACTCTGTTTTATAC 773
Query 883 AATCAGAAACTTCAGAAGCTCTTACCTCAGACAC-AAGCATCTCTTACAGGAAGCAAGAT 941
||||||||||||||||| ||||| || || || | |||||||||||| ||||||||| ||
Sbjct 774 AATCAGAAACTTCAGAATCTCTTGCCCCA-ACTCGAAGCATCTCTTAAAGGAAGCAAAAT 832
Query 942 CCTTTACTCTGATGTCTATGACCCTATGATGGAGATGCTCCAAAACCCTAGCAAATACGG 1001
||||||| | ||||||||| | ||||||||||||||| | ||||||||||||||||||||
Sbjct 833 CCTTTACGCCGATGTCTATAATCCTATGATGGAGATGATGCAAAACCCTAGCAAATACGG 892
Query 1002 ATTTAAAGAGACGACGAGAGGATGTTGTGGAACAGGGTTCTTGGAGACGAGCTTCATGTG 1061
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTTCAAAGAGACGAAGAGAGGATGTTGTGGAACAGGGTTCTTGGAGACGAGCTTCATGTG 952
Query 1062 TAATGCTTATTCT-TCC-ATGTGTCAGAATCGCTCGGAGTTTCTGTTCTTTGACTCGATT 1119
||||| || |||| ||| | |||||||||||| ||||||||| |||||||||||||||||
Sbjct 953 TAATG-TT-TTCTCTCCTACGTGTCAGAATCGGTCGGAGTTTTTGTTCTTTGACTCGATT 1010
Query 1120 CATCCATCTGAAGCTACCTACAAT-TACATTGGTAATGTTCTGGATACTAAGATTCGTGG 1178
|||||||| ||||||||||| ||| | ||| || ||| |||||||| |||||||||||||
Sbjct 1011 CATCCATCGGAAGCTACCTATAATGT-CATAGGCAATCTTCTGGATCCTAAGATTCGTGG 1069
Query 1179 GTGGCTTA-AGGCTTAAGTTATCAAGATTTGCAAAGATTGA-ACAAAATTAT---CT-GT 1232
| | || |||||||||| |||| || ||||||| | ||| |||| |||| || ||
Sbjct 1070 GAAG-TTCCAGGCTTAAGTCATCACGAGTTGCAAA-ACTGACACAATGTTATTTTCTTGT 1127
Query 1233 TTCATAATGTGACTATTTGTGGACTTC-GTTTGTTTATCAACTATTAACTTTGGC 1286
||||| ||| |||||||||||||||| |||| | ||||| | | ||| |||||
Sbjct 1128 TTCATTATGCGACTATTTGTGGACTTTTGTTTATGAATCAAGTGT-AACATTGGC 1181
> Ahg344029 jgi|Araly1|344029|fgenesh1_pg.C_scaffold_4000371
Length=1080
Score = 1260 bits (682), Expect = 0.0
Identities = 960/1093 (88%), Gaps = 23/1093 (2%)
Strand=Plus/Plus
Query 112 ATGTGGACTTCTAAAACCATAAGCTTCACTCTCTTCATCACAACAACACTTCTCGGGTCC 171
|||| |||||| || ||||||| ||||||||||||||| | ||||||| ||| ||||
Sbjct 1 ATGTCGACTTCCAAGACCATAACCTTCACTCTCTTCAT---AGCAACACTACTCTCGTCC 57
Query 172 TGCAACGCATCTGCAAAGGCCAAAACGCAACCGCTATTCCCAGCGATTCTAATCTTTGGT 231
||||| ||| | ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 58 TGCAAAGCAGCCGCAAACGCTACAACGCAACCGCTATTCCCAGCGATTCTAATCTTTGGC 117
Query 232 GATTCAACAGTCGACACAGGCAACAATAATTACC-CTTCACAAACAATCTTCAGAGCTAA 290
|| ||||||||||||||||||||||| || |||| || ||||||||||||||| ||||||
Sbjct 118 GACTCAACAGTCGACACAGGCAACAACAACTACCACT-CACAAACAATCTTCAAAGCTAA 176
Query 291 ACATGTTCCTTACGGAATTGATCTCCCAAACCACTCACCTAACGGAAGATTCTCAAACGG 350
|||| ||||||| ||||||||||||||||||||| | ||| ||||||||| |||| ||
Sbjct 177 ACATCTTCCTTATGGAATTGATCTCCCAAACCACAAAGCTAGTGGAAGATTCACAAATGG 236
Query 351 GAAAATTTTCTCCGACATAATCGCAACCAAACTCAACATCAAACAGTTTGTTCCTCCTTT 410
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 237 GAAAATCTTCTCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCCTCCCTT 296
Query 411 CTTACAACCAAATCTCACCGACCAAGAAATTGTAACCGGAGTCTGTTTCGCATCAGCAGG 470
|||||||||||||||| | |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 297 CTTACAACCAAATCTCTCTGACCAAGAAATTGTAACCGGGGTCTGTTTTGCATCAGCCGG 356
Query 471 TGCCGGTTACGATGACCAAACCAGTCTCACGACACAAGCGATTCG-TGTCTCGGAACAAC 529
||| ||||||||||||| ||||||||| |||| ||||| || || ||||||||| ||||
Sbjct 357 TGCGGGTTACGATGACCGTACCAGTCTCTCGACTCAAGCAAT-CGGTGTCTCGGACCAAC 415
Query 530 CAAATATGTTCAAGAGTTACATTGCTCGTCTTAAGAGTATCGTAGGAGACAAGAAAGCCA 589
|||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 416 CAAAGATGTTCAAGAGTTATATTGCTCGTCTTAAAAGTATCGTAGGAGACAAGAAAGCTA 475
Query 590 TGAAGATCATAAACAATGCTTTGGTGGTTGTGAGTGCAGGGCCTAATGATTTCATCTTGA 649
|| |||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||
Sbjct 476 TGGAGATCATAAACAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTTATCTTGA 535
Query 650 ATTATTACGAGGTTCCCTCATGGCGTC--GCATGTATCCT-AGCATTTCTGATTACCAAG 706
||||||| || |||| ||| |||||| | | || |||| | |||||||| ||||||||
Sbjct 536 ATTATTATGATTTTCCTTCAAGGCGTCTTG-A-GTTTCCTCA-CATTTCTGGTTACCAAG 592
Query 707 ATTTTGTTCTTAGTAGGCTTAACAATTTCGTGAAGGAGCTTTACAGCCTAGGTTGCCGGA 766
| ||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||||
Sbjct 593 ACTTTGTGCTTAAAAGGCTTGACAATCTCGTGCGGGAGCTTTACAGTTTAGGTTGCCGGA 652
Query 767 AAATTTTGGTCGGAGGTTTACCGCCAATGGGATGTTTACCGATTCAAATGACTGCTCAAT 826
||||| |||| |||||||||||||| ||||| |||||||||||||| ||||||||| |||
Sbjct 653 AAATTATGGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAGATGACTGCTAAAT 712
Query 827 TCCGCAACG-TCCTAAGGTTTTGCTTGGAACAAGAGAACAGAGACTCTGTTTTATACAAT 885
||||||||| || ||||||| |||||||||||||||||| |||||||||| || ||||||
Sbjct 713 TCCGCAACGCTC-TAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTGTACAAT 771
Query 886 CAGAAACTTCAGAAGCTCTTACCTCAGA-CACAAGCATCTCTTACAGGAAGCAAGATCCT 944
||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 772 CAGAAACTTCAGAAGCTATTACCTCAGATCG-AAGCATCTCTTACAGGAAGCAAGATCCT 830
Query 945 TTACTCTGATGTCTATGACCCTATGATGGAGATGCTCCAAAACCCTAGCAAATACGGATT 1004
||||| | ||||||||||||| |||||||| ||| | |||||||||||||||||||| ||
Sbjct 831 TTACTGTAATGTCTATGACCCGATGATGGACATGATGCAAAACCCTAGCAAATACGGGTT 890
Query 1005 TAAAGAGACGACGAGAGGATGTTGTGGAACAGGGT-TCTTGGAGACGAGCTTCATGTGTA 1063
||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 891 TAAAGAGACGAGGAGAGGATGTTGTGGAACAGGGCAT-TTGGAGACGAGCTTCATGTGTA 949
Query 1064 ATGCTTATTCTTCCAT-GTGTCAG-AATCGCTCGGAGTTTCTGTTCTTTGACTCGATTCA 1121
|||||| |||| ||| |||| || |||| ||| |||||| |||||||||||||||||||
Sbjct 950 ATGCTTTTTCT-CCAACGTGT-AGGAATCACTCCGAGTTTTTGTTCTTTGACTCGATTCA 1007
Query 1122 TCCATCTGAAGCTACCTACAATTACATTGGTAATGTTCTGGATACTAAGATTCGTGGGTG 1181
|||||| ||||||||||| || || || || ||| |||| |||| |||| |||| |||
Sbjct 1008 TCCATCGGAAGCTACCTATAACTATATGGGCAATTTTCTAGATAGGCAGATCCGTGTGTG 1067
Query 1182 GCTTAAGGCTTAA 1194
|||| |||| |||
Sbjct 1068 GCTTGAGGCCTAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5