BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58440.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475389 jgi|Araly1|475389|fgenesh2_kg.2__519__AT1G58440.1 2878 0.0
> Ahg475389 jgi|Araly1|475389|fgenesh2_kg.2__519__AT1G58440.1
Length=1829
Score = 2878 bits (1558), Expect = 0.0
Identities = 1763/1857 (95%), Gaps = 34/1857 (2%)
Strand=Plus/Plus
Query 17 aaaaaaTCTCTGTAAAAGCAGAACGATAATGGAGTCACAATTATGGAATTGGATCTTACC 76
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATTCTCTGTAAAATCAGAACGATGATGGAGTCACAATTATGGAATTGGATCTTACC 60
Query 77 TCTTTTGATCTCTTCTCTCCTCATCTCCTTCGTCGCTTTCTATGGATTCTTCGTCAAACC 136
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 TCTTTTGATCTCTTCTCTCCTCATCTCCATCGTCGCTTTCTATGGATTCTTCTTCAAACC 120
Query 137 GAAGCGGAACGGTCTCCGTCACGATCGGAAAACTGTTTCTACCGTCACCTCCGACGTCGG 196
|||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 121 GAAGCGGAACAGTATCCGTCACGATCGG---ACTGTTTCTACCGTCACTTCCGACGTCGG 177
Query 197 ATCTGTTAATATTACCGGAGATACTGTCGCTGATGTCATTGTTGTTGGAGCTGGTGTTGC 256
|||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 178 ATCTGTTAATATTACCGGTGATACCATCGCCGATGTCATTGTTGTTGGAGCTGGTGTTGC 237
Query 257 TGGTTCTGCTCTTGCTTATACTCTTGGAAAGGATAAACGCCGAGTTCATGTGATTGAAAG 316
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 238 TGGTTCTGCTCTTGCTTATACTCTTGGCAAGGATAAACGCCGAGTTCACGTGATTGAAAG 297
Query 317 AGATTTATCGGAGCCTGATCGTATTGTTGGGGAGTTGTTACAGCCTGGGGGTTACCTCAA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 AGATTTATCGGAGCCTGATCGTATTGTTGGGGAGTTGTTACAGCCTGGGGGTTACCTTAA 357
Query 377 GTTACTGGAGTTGGGAATTGAAGATTGTGTGGAAGAAATAGATGCTCAGCGTGTGTATGG 436
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 GTTACTGGAGTTGGGAATTGAAGATTGTGTGGAGGAAATAGATGCTCAGCGTGTGTATGG 417
Query 437 TTATGCACTTTTTAAAAATGGGAAACGCATTCGCTTAGCTTATCCTTTGGAGAAGTTTCA 496
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TTATGCACTTTTTAAGGATGGGAAACGTATTCGCTTAGCTTATCCTTTGGAGAAGTTTCA 477
Query 497 CGAAGATGTATCTGGAAGGAGCTTTCACAATGGACGTTTTATTCAAAGAATGCGGGAGAA 556
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 TGAAGATGTATCGGGAAGGAGCTTTCACAATGGACGTTTTATACAAAGAATGCGGGAGAA 537
Query 557 AGCTGCTTCACTTCCCAATGTTCAGCTAGAGCAAGGAACAGTTCTTTCTCTTCTAGAAGA 616
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 AGCTGCTTCACTTCCCAATGTTCAGCTAGAGCAAGGAACAGTTGTTTCTCTTCTAGAAGA 597
Query 617 GAATGGGACTATCAAAGGTGTGAGATATAAGAATAAAGCAGGAGAGGAACAAACCGCATT 676
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 598 GAATGGGACTATCAAAGGTGTGAGATATAAGAATAAAGCAGGGGAGGAACAAACAGCATT 657
Query 677 TGCAGCTTTGACTATAGTTTGTGATGGTTGTTTCTCAAACCTGCGTCGCTCTTTGTGCAA 736
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 658 TGCAGCTTTGACTATAGTTTGTGACGGTTGTTTCTCAAACCTGCGTCGCTCTTTGTGCAA 717
Query 737 TCCTCAGGTCGAGGTGCCTTCTTGTTTTGTCGGGTTGGTCCTAGAGAACTGCAATCTCCC 796
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 718 TCCTCAGGTCGAGGTGCCTTCTTGTTTTGTCGGTTTGGTCCTAGAGAACTGCAATCTCCC 777
Query 797 ATATGCAAACCATGGACATGTCGTCTTAGCAGATCCATCACCAATTTTGATGTATCCAAT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATATGCAAACCATGGACATGTCGTCTTAGCAGATCCATCACCAATTTTGATGTATCCAAT 837
Query 857 TAGTAGCACAGAGGTGCGGTGCCTAGTTGATGTTCCCGGCCAGAAAGTGCCGTCCATTGC 916
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 TAGTAGCACAGAGGTCCGGTGCCTAGTCGATGTTCCCGGCCAGAAAGTGCCGTCCATTGC 897
Query 917 AAATGGTGAAATGAAAAACTATTTGAAGACTGTTGTGGCTCCTCAGATGCCTCATGAGGT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAATGGTGAAATGAAAAACTATTTGAAGACTGTTGTGGCTCCTCAGATGCCTCATGAGGT 957
Query 977 CTATGACTCTTTCATTGCTGCGGTTGATAAAGGAAATATTAAGTCCATGCCAAACAGAAG 1036
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 CTATGACTCTTTCATTGCTGCGATTGATAAAGGAAATATTAAGTCCATGCCAAACAGAAG 1017
Query 1037 CATGCCAGCTTCTCCTTATCCTACTCCAGGGGCTCTGTTAATGGGAGATGCATTTAACAT 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CATGCCAGCTTCTCCTTATCCTACTCCAGGGGCTCTGTTAATGGGAGATGCATTTAACAT 1077
Query 1097 GCGTCATCCTTTGACGGGTGGAGGAATGACGGTTGCATTAGCTGACATTGTTGTCCTGCG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GCGTCATCCTTTGACGGGTGGAGGAATGACGGTTGCATTAGCTGACATTGTTGTCCTGCG 1137
Query 1157 TAATCTCCTTAGACCGCTGCGTGATCTTAGTGACGGCGCTAGTCTCTGCAAATATCTTGA 1216
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1138 TAATCTTCTTAGACCGCTGCGTGACCTTAGTGACGGCGCTAGTCTCTGCAAATACCTCGA 1197
Query 1217 ATCATTTTACACTCTGCGAAAGCCAGTTGCAGCAACAATCAACACCCTTGCGAATGCTCT 1276
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1198 ATCGTTTTACACTCTGCGAAAGCCAGTGGCAGCAACAATCAACACCCTTGCAAATGCTCT 1257
Query 1277 TTACCAAGTGTTCTGTTCATCAGAAAATGAAGCAAGAAACGAGATGAGGGAAGCTTGCTT 1336
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1258 TTACCAAGTGTTCTGTTCATCAAAAAATGAAGCAAGAAACGAGATGAGGGAAGCGTGCTT 1317
Query 1337 CGATTATCTGGGCCTCGGGGGTATGTGCACAAGTGGACCAGTATCTTTGCTTTCGGGTTT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CGATTATCTGGGCCTCGGGGGTATGTGCACAAGTGGACCAGTATCTTTGCTTTCGGGTTT 1377
Query 1397 GAACCCTCGACCATTAACACTTGTCTGCCATTTCTTTGCGGTTGCGGTTTATGGAGTCAT 1456
|||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1378 GAACCCTCGACCGCTAACACTTGTGTGCCATTTCTTTGCGGTTGCGATATATGGAGTCAT 1437
Query 1457 ACGGTTGTTAATCCCATTCCCTTCCCCAAAACGAATCTGGCTTGGAGCCAAATTAATCTC 1516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1438 ACGGTTGTTAATCCCATTCCCTTCCCCAAAACGAATCTGGCTTGGAGCCAAATTGATATC 1497
Query 1517 GGGAGCATCGGGGATAATATTTCCGATAATAAAAGCGGAAGGAGTTAGGCAGATGTTTTT 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGGAGCATCGGGGATAATATTTCCGATAATAAAAGCGGAAGGAGTTAGGCAGATGTTTTT 1557
Query 1577 CCCAGCAACTGTACCTGCATACTACTACAAAGCTCCTACAGTT---GGAGAAACCAAATG 1633
||||||||||||||||||||||||| | | |||||| | ||| ||||||||||||||
Sbjct 1558 CCCAGCAACTGTACCTGCATACTAC-AGA--GCTCCTCCGGTTAAAGGAGAAACCAAATG 1614
Query 1634 TTCATAGTTCCAAATAATTCTGTCACGA-GAAATGCCATACAAAAGAAAATGAAAGTTGT 1692
||||||||||| | | ||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1615 TTCATAGTTCCGATTGATTCTGTCA-GAAGAAATGCCATCCAAAAGAAAATGAAAGTTGT 1673
Query 1693 GGATTGCATTTGGTGTGTTT--GTTGTGTAAGTGTTCTTTAAACGTATAAAAGTGATGAT 1750
||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1674 GGATTGCATCTGGTGAGTTTTTGTTGTGTTAGTGTTCTTTAAACGTATAAAAGTGA-GAT 1732
Query 1751 ACTGCGATGATTATCTCTGttttttttATATAGGTATATGATGGTTGTATCTTAGTTGCA 1810
| || |||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct 1733 --T---AT------CTCTGTTTTTTT-ATA--GGT-TATGATGGTT--ATCTTAGTTGCT 1775
Query 1811 AACGGTATACCATTCTTTTACATATATCCAAGTCGCTGCGTTATAAAATTTGGTTTT 1867
|||| |||||||||||||||||||| | ||||| ||||||||||||||||| ||||
Sbjct 1776 AACGCTATACCATTCTTTTACATAT--CGAAGTCTCTGCGTTATAAAATTTG-TTTT 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5