BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G58450.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg338459 jgi|Araly1|338459|fgenesh1_pg.C_scaffold_2000558           715    0.0  


> Ahg338459 jgi|Araly1|338459|fgenesh1_pg.C_scaffold_2000558
Length=1755

 Score =  715 bits (387),  Expect = 0.0
 Identities = 445/474 (94%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  1     ATGAACAATGGAGAGAAGATAGAGGCTGCTAATAGAAAGAAAGAAGAAGGCAATCTGCTA  60
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1201  ATGAACAATGAAGAGAAGATAGAGGCTGCTAATAGAAAGAAAGAAGAAGGCAATCTGCTA  1260

Query  61    TACAAAACTCAAAAGTACGAGCGAGCAGCAAAGAAATATAATAAGGCTGCAGAATGTATT  120
             ||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct  1261  TACAAAAATCAAAAGTACCAGCGAGCAGCAAAGAAATATAATAAGGCTGCAGATTTTATT  1320

Query  121   GAAAATGGCAAATTTGAAGGTGGTGACGAAAAGCAAGTCAAGGCTTTGAGAGTATCTTGC  180
             || | ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct  1321  GAGACTGGCAAATTTGAAGGTGATGAAGAAAAGCAACTCAAGGCTTTGAGAGTATCTTGC  1380

Query  181   TTCTTGAATGGTGCAGCCTGTAGTCTAAAACTAAAGAATTTTCTGGAAACTATCGTTCTA  240
             |||||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct  1381  TTCTTGAATGCTGCAGCCTGTAGTCTAAAACTGAAGAATTTTCGGGAAACTATCATTCTA  1440

Query  241   TGTTCGGAGGTGTTAGATATTGAGTTCCAAAATGTGAAAGCTCTATATAGGCGAGCACAA  300
             ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  1441  TGTTCGGAGGTATTAGATATTGAGTTCCAAAATGTGAAAGCTTTGTATAGGCGAGCACAA  1500

Query  301   TCCTATATTGAGGTGGGAGATTTGATTTCAGCAGAAATGGATATAAATAGGGCTTTGGAG  360
             ||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct  1501  TCCCATATTGAGGTGGGAGATTTGATTTCAGCAGAAATGGATATAAAAAAGGCTCTGGAG  1560

Query  361   GCTGATCCTGAGAATCGGGAAGTGAAGTCTCTTTACAAGGCGATGAAACTCTCTAAAGCT  420
             ||||||||||||||||||||||||||||| ||||||||  || ||||| || ||||||||
Sbjct  1561  GCTGATCCTGAGAATCGGGAAGTGAAGTCCCTTTACAAAACGCTGAAATTCGCTAAAGCT  1620

Query  421   GAGAGCGACAGAAGAGACGCTAAGTTGTATGCAAACATGTTTGCACTATCTAAA  474
             |||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct  1621  GAGAGCGACAGAAGAGACGCTAAGCTCTATGCAAACATGTTTGCACTATCTAAA  1674



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5