BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G58460.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315379 jgi|Araly1|315379|fgenesh1_pm.C_scaffold_2000412           433    7e-121


> Ahg315379 jgi|Araly1|315379|fgenesh1_pm.C_scaffold_2000412
Length=453

 Score =  433 bits (234),  Expect = 7e-121
 Identities = 317/354 (90%), Gaps = 18/354 (5%)
 Strand=Plus/Plus

Query  1    ATGGATTTCTCGGATTTAGATTACAGTGATGCTGGAGATTCAGGTTGGACAATGTACTTA  60
            |||||||||||||||||| || | || ||||| |||||||||||||||||||||||||||
Sbjct  1    ATGGATTTCTCGGATTTAAATGATAGCGATGCGGGAGATTCAGGTTGGACAATGTACTTA  60

Query  61   GGCCACTCTTCTTCTGTTTCACTTCATCATTTTGATTATCACAATGGAGAAACAAAACAA  120
            | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   GACCATTCTTCTTCTGTTTCACTTCATCATTTTGATTATCACAATGGAGACACAAAACAA  120

Query  121  GAACATGATGAAGACTCTTCAATGGTGTCTGATGCATCTTCTGGACCTCCATATTATTGC  180
            ||||||||||| || ||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct  121  GAACATGATGATGATTCTTCGATGGTGTCGGATGCATCTTCCGGGCCTCCATATTATTGC  180

Query  181  GAAGAGACCGTCCATGAAGATCATCTCCAACAAAACACGCAATATTGGTGcaagagcaag  240
            ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct  181  GAAGAGACCGTCCCTGAAGATGTTCTCCAACAAAACACGCAATATTGGTGCAAGAGCAAG  240

Query  241  agcaaga--a----caagaacaa-aa-a----caagaa---gaag--g-ttcatgaagaa  282
            |||||||  |    ||||||||| || |    ||||||   ||||  | |||||||||||
Sbjct  241  AGCAAGATCAAGAACAAGAACAAGAACAAGAACAAGAACAAGAAGAAGGTTCATGAAGAA  300

Query  283  caagGATATAGTGAGAGATTCAATTCTTCCTTTGATGACACAGCTAGTTCATTG  336
            |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct  301  CAAGGATATAGTGAGAGATTTAATTCTTCCCTTGATGACACAGCTAGTTCATTG  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5