BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58470.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925161 jgi|Araly1|925161|scaffold_200722.1 1517 0.0
> Ahg925161 jgi|Araly1|925161|scaffold_200722.1
Length=1120
Score = 1517 bits (821), Expect = 0.0
Identities = 1033/1133 (91%), Gaps = 23/1133 (2%)
Strand=Plus/Plus
Query 64 AAATTAGGGTATTTGAGGATATGGATTATGATCGGTACAAGTTATTTGTTGGTGGTATTG 123
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAATTAGGGTTTTTGTGGATATGGATTATGATCGGTTCAAGTTATTTGTTGGTGGTATTG 60
Query 124 CGAAAGAGACAAGTGAAGAAGCTCTGAAGCAGTATTTTAGCAGATATGGAGC-TGTGTTG 182
||||||||| |||||||||| | |||||||||||||||||||||||||| | |||||||
Sbjct 61 GGAAAGAGACTAGTGAAGAAGATTTGAAGCAGTATTTTAGCAGATATGGA-CTTGTGTTG 119
Query 183 GAAGCTGTTGTAGCTAAAGAGAAAGTCACTGG-AAAACCTAGAGGTTTTGGGTTTGTTCG 241
| |||||||||||||||||| ||||||||||| | | || ||||| ||||||||||||||
Sbjct 120 GGAGCTGTTGTAGCTAAAGACAAAGTCACTGGTATATCC-AGAGGGTTTGGGTTTGTTCG 178
Query 242 CTTTGCTAATGATTGTGATGTTGTTAAAGCTCTTAGA-GACACTCACTTCATTCTCGGTA 300
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 179 CTTTGCTAATGATTATGATGTTGTTAAAGCTCTTA-ATGACACTCACTTCATTCTCGGTA 237
Query 301 AACCCGTTGATGTGAGAAAGGCGATTAGGAAACATGAACTATACCAACAGCCGTTTAGCA 360
|||||||||||||||| ||||| || ||||||||||| | |||||||| ||||||||||
Sbjct 238 AACCCGTTGATGTGAGGAAGGCTTTTCGGAAACATGAATTGTACCAACAACCGTTTAGCA 297
Query 361 TGCAGTTTTTGGAGAGAAAAGTGCAACAGATGAATGGTGGTTTGCGTGAGATGTCGAGTA 420
||||| | || ||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct 298 TGCAGGTATTCGAGGGAAAAGTGCAACAGACCAACGGTGGTTTGCGTGAGATGTCGAGTA 357
Query 421 ATGGT-GTGA-CCAGTAGGACTAAGAAGATATTTGTTGGGGGTTTGTCGTCTAACACGAC 478
||||| | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGGTAAT-ATTCA-TAGGACTAAGAAGATATTTGTTGGGGGTTTGTCGTCTAACACGAC 415
Query 479 TGAGGAAGAGTTTAAGAGTTACTTTGAGAGGTTTGGTAGGACTACTGATGTAGTTGTGAT 538
| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 416 TCAGGAAGAGTTTAAGAGTTACTTTGAGAGGTTTGGTCGGACGATTGATGTAGTTGTGAT 475
Query 539 GCATGACGGTGTGACTAACAGGCCAAGGGGTTTTGGGTTTGTTACTTATGATTCGGAGGA 598
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 GCATGACGGTGTGACAAACAAGCCAAGGGGTTTTGGGTTTGTTACTTATGATTCGGAGGA 535
Query 599 CTCTGTTGAGGTTGTTATGCAGAGTAATTTCCATGAGTTGAGTGATAAACGCGTGGAAGT 658
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 536 CTCTGTTGAGGTTGTTATGCGGAGTAATTTCCATGAGTTGAGTGATAAGCGCGTTGAAGT 595
Query 659 GAAACGGGCAATACCTAAAGAAGGAATCCAGAGCAATAACGGTAATGCT---GTTAATAT 715
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 596 GAAACGGGCAATACCTAAAGAAGGAATCCAGAGCAATAACGGTAATGTTAACGTTAACGT 655
Query 716 TCCTCCTTCCTACAGCAGCTTTCAAGCAACACCTTATGTCCCTGAGCAAAACGGATATGG 775
|||||| | ||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 656 GCCTCCTACATACAGCAGCTTTCAAGCAACACCGTATGTTCCTGAGCAAAACAGATATGG 715
Query 776 GATGGTTTTACAGTTTCCTCCTCCTGTCTTTGGTTATCATCACAATGTCCAAGCCGTTCA 835
||||||| |||||| ||||||| ||| || ||||||||||||| |||||||||||||||
Sbjct 716 GATGGTTCTACAGTATCCTCCTG-TGT-TT-GGTTATCATCACAGTGTCCAAGCCGTTCA 772
Query 836 ATATCCTTATGGTTACCAATTCACAGCACAAGTGGCTAACGTTTCATGGAACAATCCGAT 895
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 773 ATATCCTTATGGTTACCAATTCACAGCTCAAGTGCCTAACGTTTCATGGAACAATCCGAT 832
Query 896 TATGCAACCCACCGGTTTTTACTGTGCTCCTCCTCATCCTACTCCTCCTCCCACCAACAA 955
|||||||||||||||||||||||||||| || ||| |||| |||||||||| | |||||
Sbjct 833 TATGCAACCCACCGGTTTTTACTGTGCTGCTGCTCCTCCTCCTCCTCCTCCTAGCAACAC 892
Query 956 TCTTGGTTATATCCAAT-ACATGAACGGGTTTGATCTTTCGGGTACGAA-CATTTCCGGG 1013
|||||||||| ||| | |||||||||||||||||||||||||||| || |||| || ||
Sbjct 893 TCTTGGTTAT-TCCCCTTACATGAACGGGTTTGATCTTTCGGGTAC-AAGCATTCCCAGG 950
Query 1014 TACAATCCTCTAGCATGGCCTGTAACGGGGGATGCAGCTGGTGCGCTAATACATCAGTTT 1073
||||||||| || ||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 951 TACAATCCTGTACCATGGCCTGCAACGGGGGATGCAGCTGGTGTGCTAATACA---GTTC 1007
Query 1074 GTAGATTTGAAGCTTGATGTCCACAGTCAAGCCCATCAGAGAATGAATGGAGGTAACATG 1133
| |||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 1008 GGAGATTTGAAGTTTGATGTCCATAGTCAAGCACATCAGAGAATGAGTGGAGGTAACATG 1067
Query 1134 GGAATACCATTGCAGAATGGTACATATATATGACAGTTGCAGAATGATAAATG 1186
|||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 1068 GGAATACCATTGCAGAATGGTACATATAGATAATAGTTGCAGAATGATAAATG 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5