BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58643.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475379 jgi|Araly1|475379|fgenesh2_kg.2__509__AT1G58936.1 2159 0.0
Ahg313098 jgi|Araly1|313098|fgenesh1_pm.C_scaffold_1001878 1447 0.0
> Ahg475379 jgi|Araly1|475379|fgenesh2_kg.2__509__AT1G58936.1
Length=1461
Score = 2159 bits (1169), Expect = 0.0
Identities = 1331/1409 (94%), Gaps = 11/1409 (1%)
Strand=Plus/Plus
Query 59 ACAATACGTTCTTGTTAATAGTT-TGTGTTGTTG-GGTG-TTGTGTTCAGATGGAAGAGA 115
|||||||||| |||| |||| || ||||||| || |||| ||| ||||||||||| ||||
Sbjct 58 ACAATACGTTTTTGTCAATA-TTATGTGTTG-TGTGGTGTTTGGGTTCAGATGGAGGAGA 115
Query 116 TTGTTTTTGAAACAAAAGATGCAGTTGATTGGTCATATAGAAGCGAAGGAGTTGTTAATT 175
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 116 TTGTTTTGGAAACAAAAGATGCAGTTGATTGGTCATATAGAGGCGAAGGAGTTGTTAATT 175
Query 176 TGGTTCTCGCTTACTCTGGATCATCTCCCACTTTCTTGGGAAAGGTGATGAGGATaaaaa 235
|||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 176 TGGTTCTCACTTACACTGGATCCTCTCCCACTTTCATGGGAAAGGTGATGAGGACAAAAA 235
Query 236 aaTTACGAAACACTAGGAATGAAAATAGAGACCGAAGTGGAAGTTGTCTTACGACCCAGG 295
|| | ||||||||| ||||||||||| ||||| ||||||||| | |||||||||| ||||
Sbjct 236 AAATGCGAAACACTGGGAATGAAAATGGAGACAGAAGTGGAAATGGTCTTACGACGCAGG 295
Query 296 AAAAGCTTATTTGGGGAGAGATTAAGGATCTTGTATCTTGCCAAAACAAGGAGATTGTGG 355
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 AAAAGCTTATTTGGGGAGATATTAAGGATCTTGTATCTTGCCAAAACAAGGAGATTGCGG 355
Query 356 ACTATTTGTTTGTCAAACATGTCATGAAACCTTTGTTGGGTCACAAATATGTTACTCCTG 415
| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 356 AATATTTGTTTGTCAAACATGTCATGAAACCATTGTTGGGTCACAAATATGTTAATGCTG 415
Query 416 GAATTTGCCTTCCTGTAGAAAAGGAGTTTCTTGAGTCTGTTAAGA-AGATAGTGACGTCT 474
||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 416 GAATTCCCCTTCCTGTAGAAAAGGAGTTTCTTGAGTCTGTTAAGACA-ATAGTGACATCT 474
Query 475 CAGCGTCATTCTTGGCGAGCTAATACA-CTCAGTGTGGATACTAACCGCAGTTTCGCGCT 533
|||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||
Sbjct 475 CAGCGTCATTCTTGGCGAGCTAATGCAGC-CAGTGTGGATACTAACCGCAGTTTTGCGCT 533
Query 534 TCTCATGGATGATTTGACCATTTTCTCCCATGGTCAAGTTGAGGATCATAAACCATGCTT 593
||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 534 TCTCATGGATGATTTCACCATTTTCTCCCATGGTCAAATTGAAGATCATAAACCATGCTT 593
Query 594 AACTGTTGAAATAAAGCCCAAATGTGGATTTCTTTCATCTTCAAGTTTCATAGCGGAAGA 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 594 AACTGTTGAAATAAAGCCCAAATGTGGATTTCTTTCATCTTCAAGTTTCATAGCGGGAGA 653
Query 654 AAATGTTATCAAGAAGAGTATAAGTCGCTTCGAAATGTACCAAGTTCTAAAGCTTAGGGA 713
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 654 AAATGTTATTAAGAAGAGTATAAGTCGTTTCGAAATGTACCAAGTTCTAAAGCTTAGAGA 713
Query 714 AAACCAGATATCACAAATCAGTGAATATGATCCCTTAGACCTTTTCTCTGGATCCAAAGA 773
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 AAACAAGATATCACAAATCAGTGAATATAATCCCTTAGACCTTTTCTCTGGATCCAAAGA 773
Query 774 TAGAATACACAAAGCAATAAAAGCGCTCTACTCGACTCCTCAAAACAGTTTACAAGTGTT 833
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TAGAATACACAAAGCGATAAAAGCGCTCTACTCGACTCCTCAAAACAGTTTACAAGTGTT 833
Query 834 CTTGAATGGTTCTCTAGTATTTGGAGGCTTCCGTGGTGGTATATGCAAAACAACCTCAAA 893
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 834 CTTGAATGGTTCTCTGGTATTTGGAGGTTTCCGTGGTGGCATATGCAAAACAACCCCAAA 893
Query 894 GCTTGAATTAGCTTTTGAGCATACACTCAAAGATTTCTTCAAAACCGAAGATGACTGCGG 953
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 894 GCTTGAATTAGCTTTTGAGCATAAACTCAAAGAATTCTTCAAAACCGAAGATGACAGCGG 953
Query 954 CCTACGTGCAAATGCTTTCATAGAGCTTGTTGCAGAAACTGTTTACGCATCTGGAGCTTT 1013
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 954 CGTACGTGCAAATACTTTCATAGAGCTTGTTACAGAAACTGTTTACGCATCTGGAGCTCT 1013
Query 1014 AGATCAGCTTCTTGAGGTTCAAAAGCTTGACAAATATAACATCGAGGGAGCGATTCACGC 1073
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1014 AGATCAGCTTCTTGACGTTCAAAAGCTCGACAAATATAACATCGAGGGAGCGATTCACGC 1073
Query 1074 GTACTATGACTTAGTTGACCAGCCATGTAAAGCGTGCCAAGAGTTGGAAAGTAGTAAATT 1133
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CTACTATGACTTAGTTGACAAGCCATGTAAAGCGTGCCAAGAGTTGGAAAGTAGTAAATT 1133
Query 1134 ATCGAATCAGTTTGGTTCCATGCATTC-ATTGCCACAGGATGAGAAAGTAAATATTTTGA 1192
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1134 ATCGAATCAGTTTGGTTCCATGCATTCGATT-CCACAGGATGAGAAAGTAAATATTTTGA 1192
Query 1193 AGGATTTTCTAATATCTTCCACTGCTATAGATTGTAGTGTAATGATAAGTTTTAGACCAA 1252
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1193 AGGATTTTCTAATATCTTCCACTGCTACAGATTGTAGTGTAATGATAAGTTTCAGACCAA 1252
Query 1253 TAGAGACTGGGCTCTCAAGATCCTCTTCCCACGGTAACATTCAACTTGAATCAACAAAGC 1312
||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1253 TAGAGACAGGGCTCTCAAAATCCTCTTCCCACGGTAATATTCATCTTGAATCAACAAAGC 1312
Query 1313 AAGAATTTGAGTATAAGATACACTTCATTGATCTTGATATGAGACCTTTAAAGAGAATGG 1372
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1313 AAGAATTTGAGTATAAGGTACACTTCATTGATCTTGATATGAGACCTTTGAAGAGAATGG 1372
Query 1373 AAGCCTATCACGAATCAGACAAGAAGATCACAAAAACATACCAGGAGATGCTCAAGAAGA 1432
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1373 AAGCCTATCACGAATCAGACAAGAAGATCACGAAAACATACCTGGAGATGCTCAAGAAGA 1432
Query 1433 AGAAAGGAGATCAACCTCGGCGCTTCTAG 1461
||||||||||||||||||| ||||| |||
Sbjct 1433 AGAAAGGAGATCAACCTCGACGCTTTTAG 1461
> Ahg313098 jgi|Araly1|313098|fgenesh1_pm.C_scaffold_1001878
Length=1326
Score = 1447 bits (783), Expect = 0.0
Identities = 1183/1369 (86%), Gaps = 56/1369 (4%)
Strand=Plus/Plus
Query 106 ATGGAAGAGATTGTTTTTGAAACAAAAGATGCAGTTGATTGGTCATATAGAAGCGAAGGA 165
||||| ||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAGGAGATTGTTTTGGAACCAAAGGATGCAGTTGATTGGTCATATAGAGGCGAAGGA 60
Query 166 GTTGTTAATTTGGTTCTCGCTTACTCTGGATCATCTCCCACTTTCTTGGGAAAGGTGATG 225
| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 61 GCTGTTAATTTGGTTCTCGCTTACACTGGATCTTCTCCCACTTTCTTGGGAAAGATGATG 120
Query 226 AGGATa-aaaaaaTTACGAAA-CACTAGGAATGAAAATAGAGACCGAAGTGGAAGTTGTC 283
|||||| | |||| | | ||| | | ||||||||||| ||||| ||||| || |||
Sbjct 121 AGGATACAGAAAA-TGCCAAAGGA-TGGGAATGAAAATGGAGACAAAAGTGAAAACGGTC 178
Query 284 TTACGACCCAGGAAAAGCTTATTTGGGGAGAGATTAAGGATCTTGTATCTTGCCAA-AAC 342
|||| || || |||||||||||||||| ||| |||||||||||||||||||| ||| |||
Sbjct 179 TTACTACTCATGAAAAGCTTATTTGGGCAGACATTAAGGATCTTGTATCTTG-CAAGAAC 237
Query 343 AAGGAGATTGTGGACTATTTGTTTGTCAAACATGTCATGAAACCTTTGTTGGGTCACAAA 402
|||||||||| || ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 238 AAGGAGATTGAAGAGTATTTGTTTGTCAAACATGTCATGAGACCTTTGTTGGGTCGTAAA 297
Query 403 TATGTTACTCCTGGAATTTGCCTTCCTGTAGAAAAGGAGTTTCTTGAGTCTGTTAAGAAG 462
|||| | ||||||||| | |||| ||||| |||||| |||||||| |||||| ||||
Sbjct 298 CATGTCAATCCTGGAATACGTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAA 357
Query 463 A-TAGTGACGTCTCAGCGTCATTCTTGGCGAGCTAATACA-CTCAGTGTGGATACTAACC 520
| || | || |||||||||| ||||||||||||| || || || ||||||||||||||||
Sbjct 358 ATTA-TAACATCTCAGCGTCCTTCTTGGCGAGCTGATGCAGCT-AGTGTGGATACTAACC 415
Query 521 GCAGTTTCGCGCTTCTCATGGATGATTTGAC-CATTTTCTCCCATGGTCAAGTTGAGGAT 579
|||||| || ||||||||||||||||||||| | ||||| |||| ||||| |||||||
Sbjct 416 GCAGTTCCGTGCTTCTCATGGATGATTTGACGC-TTTTCGCCCACGGTCATGTTGAGG-- 472
Query 580 CATAAACCATGCTTAACTGTTGAAATAAAGCCCAAATGTGGATTTCTTTCATCTTCAAGT 639
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 -ATAAACCATGCTTAAGTGTTGAAATAAAGCCCAAATGTGGATTTCTTCCATCTTCAAGT 531
Query 640 TTCATAGCGGAAGAAAATGTTATCAAGAAGAGTATAAGTCGCTTCGAAATGTACCAAGTT 699
|||||||| |||||||||||||| ||||||||||| | ||| ||| ||||| ||||| ||
Sbjct 532 TTCATAGCAGAAGAAAATGTTATTAAGAAGAGTATTACTCGTTTCCAAATGCACCAAATT 591
Query 700 CTAAAGCTTAGGGAAAACCAGATATCACAAATCAGTGAATATGATCCCTTAGACCTTTTC 759
|| ||||||| ||||||| |||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 592 CTCAAGCTTAAGGAAAACGAGATCTCAGAAATCAGTGAATATGATCCTTTAGACCTTTTC 651
Query 760 TCTGGATCCAAAGATAGAATACACAAAGCAATAAAAGCGCTCTACTCGACTCCTCAAAAC 819
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 652 TCTGGATCCAAAGATAGAATACTCAAAGCAATAAAAGCGCTCTACGCGACTCCTCAGAAC 711
Query 820 AGTTTACAAGTGTTCTTGAATGGTTCTCTAGTATTTGGAGGCTTCCGTGGTGGTATATGC 879
| ||| | |||||| ||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 712 AATTTCCGTGTGTTCCTGAATGGTTCTCTGGTATTTGGAGGCTTAGGTGGTGGCATATGC 771
Query 880 AAAACAACCTCAAAGCTTGAATTAGCTTTTGAGCATACACTCAAAGATTTCTTCAAAACC 939
||||||||||||||| ||||| ||||||||||||||| |||||||||| || |||| |||
Sbjct 772 AAAACAACCTCAAAGGTTGAACTAGCTTTTGAGCATATACTCAAAGATATCATCAAGACC 831
Query 940 GAAGATGACTGCGGCCTACGTGCAAAT-GCTTTCATAGAGCTTGTTGCAGAAACTGTTTA 998
| ||| || | |||||||| || | ||||||||||||||| ||||||||||||||
Sbjct 832 TA---TGA-TG-GTT-TACGTGCAGATCG-TTTCATAGAGCTTGTAGCAGAAACTGTTTA 884
Query 999 CGCATCTGGAGCTT-TAGATCAGCTTCTTGAGGTTCAAAAGCTTGACAAATATAACATCG 1057
| ||||||||| || ||||||||||||| || || |||||||| || |||||||||||||
Sbjct 885 CACATCTGGAG-TTCTAGATCAGCTTCTAGACGTCCAAAAGCTCGATAAATATAACATCG 943
Query 1058 AGGGAGCGATTCACGCGTACTATGACTT-AGTTGACCAGCCATGTAAAGCGTGCCAAGAG 1116
||||||||||||||| ||||||||||| | |||||||||||||||||| |||| | |||
Sbjct 944 AGGGAGCGATTCACGTATACTATGACTTCA-TTGACCAGCCATGTAAAGTGTGC-A-GAG 1000
Query 1117 TTGGAAAGTAGTAAATTATCGAATCAGTTTGGTTCCATGCATTCA-TTGCCACAGGATGA 1175
| || | || | | ||| | | | | ||||||||||| || |||| ||||||
Sbjct 1001 ----A--GTTG-AA-T---C-AAT-A-TA-GCT-CCATGCATTCAATT-CCACTGGATGA 1043
Query 1176 GAAAGTAAATATTTTGAAGGATTTTCTAATATCTTCCACTGCTATAG-ATTGTAGTGTAA 1234
||||| ||||||||||||||||||||||||||| ||||||| | || ||||||||||||
Sbjct 1044 AAAAGTGAATATTTTGAAGGATTTTCTAATATCTGCCACTGCAA-AGGATTGTAGTGTAA 1102
Query 1235 TGATAAGTTTTAGACCAATAGAGACT-GGGCTCTCAAGATCCTCTTCCCACGGTAA-CAT 1292
|||||||||||||||||| ||| | | |||||||||||||||||||| ||| |||| | |
Sbjct 1103 TGATAAGTTTTAGACCAACAGA-AGTTGGGCTCTCAAGATCCTCTTCTCACAGTAATC-T 1160
Query 1293 TCAACTTGAATCAACAAAGCAAGAATTTGAGTATAAGATACACTTCATTGATCTTGATAT 1352
||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 1161 TCATCTTGAATCAACAAAGCAAGAATTTGAGTACAAGGTACATTTCATTGATCTTGATAT 1220
Query 1353 GAGACCTTTAAAGAGAATGGAAGCCTATCACGAATCAGACAAGAAGATCACAAAAACATA 1412
||||||||| |||| |||||||| |||| |||||| |||||||||||||| || |||||
Sbjct 1221 GAGACCTTTGAAGAAAATGGAAGTCTATTACGAATTAGACAAGAAGATCATGAACACATA 1280
Query 1413 CCAGGAGATGCTCAAGAAGAAGAAAGGAGATCAACCTCGGCGCTTCTAG 1461
|| ||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1281 CCTGGAGATGCT---GAAGAAGAAAGGAGATCAACCTCGATGTTTCTAG 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5