BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58684.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475376 jgi|Araly1|475376|fgenesh2_kg.2__506__AT1G58684.1 1461 0.0
> Ahg475376 jgi|Araly1|475376|fgenesh2_kg.2__506__AT1G58684.1
Length=1072
Score = 1461 bits (791), Expect = 0.0
Identities = 1004/1101 (91%), Gaps = 37/1101 (3%)
Strand=Plus/Plus
Query 1 ACTTCATCGAAAATGGCGGAAAGAGGAGGAGAAAGCGGCGCAGAGCGTGGCGGTGACCGT 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACTTCATCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGT 60
Query 61 GGTGACTTCGGGCGTGGATTCGGCGGTGGACGTGGAGGTGGCCGTGGCCGTGATCGTGGT 120
||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GGTAACTTCGGACGTGGATTCGGCGGTGGAC------GTGGCGGTGGCCGTGATCGTGGT 114
Query 121 CCAAGAGGCCGTGGAAGACGTGGAGGCCGTGCCTCGGAAGAAACGAAATGGGTTCCAGTG 180
|||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 115 CCAAGAGGTCGTGGACGACGTGGAGGCCGTGCCTCGGAAGAAGCGAAATGGGTTCCAGTG 174
Query 181 ACCAAACTAGGTCGTCTAGTGGCT-GACAATAAAATAACGAAGCTAGAGCAGATCTATCT 239
|| ||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||
Sbjct 175 ACGAAACTAGGTCGTCTAGT-GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATCT 233
Query 240 TCATTCTCTCCCAGTAAAGGAGTACCAAATCATAGATCATCTTGTTGGTCCTACGTTGAA 299
|||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 234 CCATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGAA 293
Query 300 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 353
Query 360 ATTCAAGGCCTTTGTTGTTGTTGGTGATGGAAATGGTCATGTTGGTTTGGGTGTCAAGTG 419
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 354 ATTCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGTG 413
Query 420 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTATCAGTGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 414 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTGT 473
Query 480 TCCGGTGAGGAGAGGTTATTGGGGGAATAAGATTGGGAAGCCACACACTGTGCCTTGTAA 539
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 TCCGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTAA 533
Query 540 GGTTACTGGTAAATGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCGAGAGGTTCTGG 599
||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 534 GGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTGG 593
Query 600 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTCGCTGGTATTGATGATGTCTT 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCTT 653
Query 660 TACTTCTTCAAGAGGATCTACCAAAACCCTTGGAAACTTTGTCAAGGCTACATTCGATTG 719
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 654 TACTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGATTG 713
Query 720 CTTACAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACTAGATTCTCCAG 779
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 714 CCTGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCCAA 773
Query 780 ATCGCCGTACCAAGAGCACACTGATTTCCTGTCGACTAAGGCTGTTTCTGCAACCAAGGT 839
|||||||||||||||| |||||||||||||| |||||||||||||| | || | || ||
Sbjct 774 ATCGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCCGCTAAAGT 833
Query 840 TATCACTGAGGGTGAAGACCAAGCTTAAGACCTTCATGAGATGAGTTTGGTTT-ATAGGT 898
|||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 834 TATCACCGAGGGTGAAGACCAAGCGTAAAACCTTCATGAGATGAGTTTGGTTTTATAGGT 893
Query 899 TTT-GGTTATCGCAAATAT-TTA-TCTTTCCGGTCTTGTTTCTTGGTTGTCTTTTATCAG 955
||| |||| |||||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 894 TTTTGGTTGTCGCAAATATCTTTCTCTTTACAGTCTTGTTTCTTGGTTGTCTTGTG--AG 951
Query 956 TTTTTGATATTGGAGTTTCAGTTACAAGGATAATCATAATTTAGTTATGTTTGGCTTTTG 1015
||||||||||||| | ||| || | | | |||||||||||| |||||
Sbjct 952 TTTTTGATATTGG-G-----GTT-------TA-T--T--T--AGTTATGTTTGGATTTTG 991
Query 1016 TTAGATATTTGCTTCCATGAAATGACATTTTGCAATAAT---GCATGTCTATTTCTAAGT 1072
|||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 992 TTAGATGTTTGCTTCCATGAAATGACCTTTTGCAATAATAATGCATGTCTATTTCTCAGT 1051
Query 1073 TCTTGCAATTAATCAGTCTAA 1093
|||||| |||||||||| |||
Sbjct 1052 TCTTGCCATTAATCAGTTTAA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5