BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G58807.1
Length=3696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907562 jgi|Araly1|907562|Al_scaffold_0002_643 2501 0.0
Ahg914885 jgi|Araly1|914885|Al_scaffold_0001_5139 1221 0.0
Ahg907577 jgi|Araly1|907577|Al_scaffold_0002_658 1044 0.0
Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577 211 3e-53
> Ahg907562 jgi|Araly1|907562|Al_scaffold_0002_643
Length=2619
Score = 2501 bits (1354), Expect = 0.0
Identities = 2245/2664 (84%), Gaps = 105/2664 (4%)
Strand=Plus/Plus
Query 131 GGAAGCA-TTATGGCTGGGGAACTTATTTCGTTTGGTATACAAAACCTGTGGAACCTACT 189
||||| | | || |||||||||||| | ||||| || |||||||| || ||| | ||||
Sbjct 3 GGAAGAAGTCATAGCTGGGGAACTTGTGTCGTTAGGAATACAAAAGCTTTGGGATTTACT 62
Query 190 GAGTCAAGAATGCGAGCTATTTCAGGGAGTCGAAGATCAAGTAACTGAACTAAAAAGGGA 249
||||| ||||||||||| | |||||||||||||||||||||| |||| ||||||| | ||
Sbjct 63 GAGTCGAGAATGCGAGCGAATTCAGGGAGTCGAAGATCAAGTTACTGGACTAAAACGTGA 122
Query 250 TCTAAACAT-GTTAAGCTCTTTTCTGAAAGATGCAAATGCAAAGAAACATACAAGTGCGG 308
|||||| | ||||||||||||| | ||||||||| |||| |||||||||||||||| ||
Sbjct 123 TCTAAA-TTGGTTAAGCTCTTTTTTAAAAGATGCATATGCCAAGAAACATACAAGTGAGG 181
Query 309 TGGTGAAAAACTGTGTTGAAGAGATCAAGGAAATTATCTATGATGGAGAGGATACAATCG 368
||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
Sbjct 182 TGGTGAAAAACTGTGTTGAAGAGATCAAGGAAATTATTTGTGATGGAGAGGATACTATAG 241
Query 369 AAACATTTGTTCTTG-AGCAAAACCTGGGAAAAACAAGTGGTATCAAGAAGAGTATCAGA 427
|||| ||| ||| || ||||||| || |||||||||||||| ||||||| | ||| || |
Sbjct 242 AAACCTTTCTTC-TGAAGCAAAAACTCGGAAAAACAAGTGGAATCAAGATGCGTACCAAA 300
Query 428 AGACTTGCTTGCATTATTCCAGATCGGAGGAGATA-TGCATTAGGTATCGGAGGCTTAAG 486
||||||||||||||| |||||||||| ||| || | | |||||| ||| | |||| || |
Sbjct 301 AGACTTGCTTGCATTGTTCCAGATCGCAGG-GAAAGTTCATTAGATATTGCAGGCATACG 359
Query 487 TAATAGGATCTCCAAGGTGATCCGAGATATGCAG-AGTTTTGGAGTGCAACAAGCT-ATC 544
|| ||||||||| | || |||| ||||||| || || |||||||| |||| || | |||
Sbjct 360 TACGAGGATCTCCGATGTTATCCAAGATATGGAGAAG-TTTGGAGTACAAC-AGATGATC 417
Query 545 GTTGATGGTGGGTATAAGCAACCTCAAGGTGATAAACAAAGGGAGATGCGACAAAAATTT 604
||||||||||||||| |||||||| | |||||| ||||| ||||| |||||||| ||||
Sbjct 418 ATTGATGGTGGGTATATGCAACCTCTACGTGATAGACAAAAGGAGAGGCGACAAACATTT 477
Query 605 TCTAAGGACGACGACA--G-CGATTTTGTGGGGTTGGAGGCAAATGTTAAGAAATTGGTT 661
| ||||| | || | | |||||||||| ||||||||||||||||||||||||||||
Sbjct 478 CCCAAGGAAAATGAAAGTGATGATTTTGTGGCGTTGGAGGCAAATGTTAAGAAATTGGTT 537
Query 662 GGATATTTGGTGGACGAAGCAAACGTTCAAGTGGTTTCCATAACCGGTATGGGTGGTCTA 721
|||||||| ||||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct 538 GGATATTTTGTGGAGGACGCTAACGTTCAAGTGGTTTCCATAACCGGAATGGGTGGTCTT 597
Query 722 GGTAAAACCACACTTGCTAAACAGGTTTTTAACCATGAGGATGTTAAACATCAGTTTGAT 781
||||||||||| ||||||| ||| |||||||| ||||||||||| |||| |||||||||
Sbjct 598 GGTAAAACCACCCTTGCTAGACAAGTTTTTAATCATGAGGATGTAAAACGTCAGTTTGAC 657
Query 782 GGGCTCTCATGGGTGTGTGTTTCACAAGATTTTAC-CCGAATGAATGTATGGCAAAAGAT 840
||| || |||||||||||||||||||||| ||||| | ||| ||||||||||||||||||
Sbjct 658 GGGTTCGCATGGGTGTGTGTTTCACAAGACTTTACTCGGAA-GAATGTATGGCAAAAGAT 716
Query 841 CTTGAGG-GACCTCAAACCCAAAGAGGAAGAAAAGAAAATCAT-GGAGATGACACAAGAT 898
|||| || || |||||||||||||| ||||||||||||||| | ||||||||| || |
Sbjct 717 CTTG-GGTGATCTCAAACCCAAAGAAGAAGAAAAGAAAATC-TCAGAGATGACAGAATCT 774
Query 899 ACACTCCAAGGTGAACTAATTCGATTGTTGGAAACGTCTAAGTCATTAATTGTCCTCGAT 958
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 775 AGACTCCAAGATGAACTAATTCGATTGTTGGAAACGTCTAAGTCATTAATTGTCCTTGAT 834
Query 959 GACATATGGGAAAAAGAAGATTGGGAACTAATCAAGCCAATATTTCCACCGACCAAAGGT 1018
||||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 835 GACATATGGAAAAAAGAAGATTGGGACCTAATCAAGCCAATATTTCCACAGACAAAAGGT 894
Query 1019 TGGAAAGTGTTGCTTACTTCTCGAAATGAGAGTGTCGCCATGCGTAGAAATAC-ATCATA 1077
|||||||||||||| |||||||||||||||||| ||| ||| |||| ||| | ||||
Sbjct 895 TGGAAAGTGTTGCTCACTTCTCGAAATGAGAGTATCGTTGTGCCTAGAGGTACGA-CATA 953
Query 1078 TATCAACTTTAAACCAGAATGCCTAACCACTGAAGACAGTTGGACACTTTTTCAGAGGAT 1137
||||||||| |||| |||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 954 TATCAACTTAAAACTAGAATGTCTAACCACTAAAGACAGTTGGACACTTTTTCAAAGGAT 1013
Query 1138 AGCACTTCCTATGAAAGATGCAGCTGAATTTAAGATTGATGAGGAAAAGGAAGAGTTGGG 1197
|||||||||||| ||||||||| | |||||||||||||||||||||| ||||||| | ||
Sbjct 1014 AGCACTTCCTATAAAAGATGCATCAGAATTTAAGATTGATGAGGAAATGGAAGAGATAGG 1073
Query 1198 TAAGCTAATGATCAAACACTGTGGAGGGTTACCATTGGCCATCAGAGTGTTAGGAGGTAT 1257
|||| |||||||||||| ||||||||| |||||||||| |||| ||||||||||||| |
Sbjct 1074 TAAGGAAATGATCAAACATTGTGGAGGGCTACCATTGGCAATCAAAGTGTTAGGAGGTTT 1133
Query 1258 GTTAGCTGAAAAATACACATC-GCATGATTGGAGAAGATTATCTGAGAATATTGGATCTC 1316
|||||||| ||| |||||| | |||||||||| |||||||||| |||||||||| ||||
Sbjct 1134 GTTAGCTGCAAAGTACACA-CTACATGATTGGAAAAGATTATCTAAGAATATTGGGTCTC 1192
Query 1317 ATCTCGTGGGAGGAAGAACTAACTTTAATGACGACAACAACAATACATGT-AACAATGTA 1375
||||| |||||||||||||||| ||||||| ||||||||||||| ||| | ||| |||||
Sbjct 1193 ATCTCCTGGGAGGAAGAACTAATTTTAATGGCGACAACAACAATTCAT-TCAACTATGTA 1251
Query 1376 TTGTCTCTAAGCTTTGAAGAATTGCCAAGTTATTTGAAGCATTGTTTCCTCTACTTGGCC 1435
|||||||| |||||||| || ||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1252 TTGTCTCTGAGCTTTGACGAGTTGCCTAGTTATTTGAAACATTGTTTCCTCTACCTGGCC 1311
Query 1436 CATTTTCCAGAAGATTATGA-GATAAAGGTAGAGAACTTGTCA-TATTACTGGGCTGCAG 1493
|||||||||||||||||| | ||||||| |||||||||||| | ||||||||||||||||
Sbjct 1312 CATTTTCCAGAAGATTAT-ATGATAAAGTTAGAGAACTTGT-ATTATTACTGGGCTGCAG 1369
Query 1494 AAGGAA-TATTCCAACCTAGGCATTACGATGGAGAGACCATTCGAGATGTTGGAGATGTC 1552
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AA-GAAGTATTCGAACCTAGGCATTACGATGGAGAGACCATTCGAGATGTTGGAGATGTC 1428
Query 1553 TACATAGAGGAGCTGGTGAGGAGGAATATGGTCATTTCCGAAAGAGATG-TAAAGACTTC 1611
||| |||||||| |||||||||| ||||||||| | || |||||||| | || |||||
Sbjct 1429 TACGTAGAGGAGTTGGTGAGGAGAAATATGGTCGTATCTGAAAGAGAAGCTAC-GACTTT 1487
Query 1612 GAGATTTGAAACTTGTCATTTGCATGACATGATGAGAGAAGTTTGTTTGTTAAAAGCTAA 1671
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 1488 GAGATTTGAAACTTGTCATTTGCATGACATGATGAGAGAAATTTGTTTGTTGAAAGCCAA 1547
Query 1672 AGAAGAAAACTTCCTACAAATTACCAGTAGCCGCCCTTCAACTGCAAACT-TGCAGTCTA 1730
|||||| || |||||||||||||| |||||| ||||| |||| |||||| | || | ||
Sbjct 1548 AGAAGAGAATTTCCTACAAATTACTAGTAGCGGCCCTCCAACCGCAAACCAT-CAATTTA 1606
Query 1731 CTGTCACATCTCGCAGGTTTGTCT-AC-CAATATCCTACTACTTTACATGTTGAGAAAGA 1788
|||||| ||||||||| ||||||| || |||| |||||||| ||||||||||||| |||
Sbjct 1607 CTGTCAAATCTCGCAGATTTGTCTCACACAAT--CCTACTACATTACATGTTGAGAGAGA 1664
Query 1789 TATAAACAATCCAAAACTTCGAGCTCTCGTGGTTGTT-ACCT---TGGG--AAGTTGGAA 1842
|||||||||||||||||||||| ||||| |||||||| | | | | ||| |||||
Sbjct 1665 TATAAACAATCCAAAACTTCGATCTCTCATGGTTGTTCAGGTGAATAAGTCAAGATGGAA 1724
Query 1843 CCTGGCAGGTTCAAGCTT-TACAAGGTTAGAACTTCTGAGGGTGTTAGATCTTATTGAAG 1901
||| |||||||||| || || |||| |||||||| |||||||||||||||| | || ||
Sbjct 1725 GCTGTCAGGTTCAAG-TTATAGAAGGGTAGAACTTTTGAGGGTGTTAGATCTCAGTGGAG 1783
Query 1902 TGAAGATTAAAGGAGGGAAGTT-AGCTTCTTG-CATTGGAAAGCTCATCCACTTAAGATA 1959
||| |||||||| |||| || |||| | || |||||| ||||||||||| ||||||||
Sbjct 1784 CCAAGTTTAAAGGAAGGAA-TTCAGCT-CATGGCATTGGGAAGCTCATCCATTTAAGATA 1841
Query 1960 CTTGAGCTTAGAGTATGCAGAGGTAACTCATATACCTTACT-CACTAGGAAATCTGAAGT 2018
||| |||||| | |||| |||||| ||||||||||| || | ||||||||||||||||
Sbjct 1842 CTTAAGCTTAAAACATGCTGAGGTATCTCATATACCTC-CTTCTCTAGGAAATCTGAAGT 1900
Query 2019 TGTTGATCTATCTGAATTTAGCT-T-CATTCGGAAGATCTACATTTGTGCCCAATGTCTT 2076
|| |||| |||||||||||| || | ||| | | | ||| || ||| |||||||||||
Sbjct 1901 TGCTGATTTATCTGAATTTATCTGTACATACT-AGGC-CTATATGTGTACCCAATGTCTT 1958
Query 2077 GATGGGGATGCAAGAACTGAGATACCTTGCGTTACCATCTGATATGGGGAGGAAGACAAA 2136
|| |||||||| |||| ||||||||||||| ||||||| || |||| |||||||| || |
Sbjct 1959 GAAGGGGATGCCAGAATTGAGATACCTTGCATTACCATGTGTTATGCGGAGGAAGCCACA 2018
Query 2137 ACTAGAATTGAGTAATCTAGTAAAATTGGAGACTTTAGAGAA-TTTCTCAACAGAGAATA 2195
|||||||||||||||||||||||| |||||||| | || || |||||||||| ||||||
Sbjct 2019 ACTAGAATTGAGTAATCTAGTAAACTTGGAGACCCT-GAAAAATTTCTCAACAAAGAATA 2077
Query 2196 GCAGCTTGGAGGATCTTTGTGGTATGGTCAGGCTGAGCACG-CTCAACATCAAATTAATT 2254
||||||||||||||||| ||||||||||||||||||| | | |||| ||||| ||||| |
Sbjct 2078 GCAGCTTGGAGGATCTTCGTGGTATGGTCAGGCTGAGGA-GTCTCATCATCAGATTAACT 2136
Query 2255 GAGGAGACGAGTCTAGAAACTCTAGCTGCATCTATAGGTGGATTGAAATACCTGGAAAAA 2314
|||||||||||| | ||||| ||| ||||||| ||||||||| || |||| ||||||||
Sbjct 2137 GAGGAGACGAGTATGGAAACACTATCTGCATCAATAGGTGGACTGCAATATCTGGAAAAT 2196
Query 2315 CTTGAAATATATGATCACGGTTCTGAGATG-AGGACGAAGGAAGCGGGAATCGTATTTG- 2372
||||| || | | || || || || |||| || |||| ||| || ||||
Sbjct 2197 CTTGATATGGAGG--CAA--TT--GAT-TGGAGGATAAAAGAAGA---AATAGT-TTTGG 2245
Query 2373 ATTTCGTTCATCTCAAAAGGCTATGGTT-GAAACTGTAT-ATGCCTAGGCTTTCTACAGA 2430
|||||| |||| | |||| ||| | || | || | || ||||| || ||| ||| |||
Sbjct 2246 ATTTCGCTCATGTAAAAAAGCTGCGTTTTGGTAC-G-ATTATGCCAAGACTTCCTAAAGA 2303
Query 2431 ACAACACTTCCCTTCTCACCTTACA--ACCTTATATCTAGAAAGTTGTCGGTTGGAAGAG 2488
| ||||||||||||||| | ||| | | || | || | | ||| ||||| |||
Sbjct 2304 AGAACACTTCCCTTCTCGC-TTA-ATGATATTGGAGCTGGGATCATGTTATTTGGAGGAG 2361
Query 2489 GATCCCATGCCGATTCTAGAGAAGTTGCTACAGTTGAAAGAGCTT-GAATTAGGGTTTGA 2547
||||| ||||||||||| ||||| ||||| || || |||||| || | |||||| |||
Sbjct 2362 GATCCAATGCCGATTCTTGAGAAATTGCTTCATTTAAAAGAGGTTCGT-TTAGGGATTGC 2420
Query 2548 AT-CTTTC-AGTGGAAA-GAAAATGGTTTGCTCGAGCGGTGGGTTTCCTCAATTGCA-AA 2603
| ||||| | ||||| |||| ||||||||||| |||||||||||||||| ||| | ||
Sbjct 2421 -TGCTTTCTA-TGGAAGCGAAA-TGGTTTGCTCGGGCGGTGGGTTTCCTCAGTTGGAGAA 2477
Query 2604 GGCTTTCAT-TAC-TGAAACTAGAGGAA-TGGGAAGATTGGAAAGTAGAAGAAAGCTCCA 2660
| || || || | | |||| | || |||||||| |||| |||||||||| ||||||
Sbjct 2478 G-CTCG-ATATAAAT-AGACTATAT-AACTGGGAAGAGTGGATAGTAGAAGAAGGCTCCA 2533
Query 2661 TGCCACTTCTTCGTACTCTCGATATTCAG-GTATGTCGAAAATTAAA-GCAGCTTCCTGA 2718
|||| ||||||| |||||| |||| | | ||||| ||||||||| | ||||||| |
Sbjct 2534 TGCCCCTTCTTCATACTCTTTCTATTAATAG-ATGTCAAAAATTAAAAG-AGCTTCCGGC 2591
Query 2719 TGAACACCTTCCTTC-TCACCTTA 2741
| ||||||||||||| | ||||||
Sbjct 2592 TCAACACCTTCCTTCAT-ACCTTA 2614
Score = 169 bits (91), Expect = 2e-40
Identities = 201/252 (80%), Gaps = 16/252 (6%)
Strand=Plus/Plus
Query 2762 TGTTGTTTGGAGAAAGATCCATTGCCGACTCTAGGGAGATTGGTTTACTTGAAAGAGCTT 2821
|||| ||||||| | |||||| |||||| ||| | || |||| || | || |||||| ||
Sbjct 2347 TGTTATTTGGAGGAGGATCCAATGCCGATTCTTGAGAAATTGCTTCATTTAAAAGAGGTT 2406
Query 2822 CAATTAGGGTTTAG-AACTTTC-AGTGGGAG-GATAATGGTTTGCTCGGGCGGTGGGTTT 2878
| |||||| || | ||||| | ||| || || |||||||||||||||||||||||||
Sbjct 2407 CGTTTAGGGATT-GCTGCTTTCTA-TGGAAGCGA-AATGGTTTGCTCGGGCGGTGGGTTT 2463
Query 2879 CCTCAATTGCAGAAGCTTTCAATATA--TCGGCTAGAGGAA-TGGGAAGAGTGGATAGTA 2935
||||| ||| ||||||| | ||||| | | ||| | || ||||||||||||||||||
Sbjct 2464 CCTCAGTTGGAGAAGCT--CGATATAAATAGACTATAT-AACTGGGAAGAGTGGATAGTA 2520
Query 2936 GAACAAGGCTCTATGCCCTTTCTTCATACTCTCTATATCGAT-GATTGTCCAAAGTTAAA 2994
||| ||||||| |||||| ||||||||||||| | ||| || ||| ||| ||| |||||
Sbjct 2521 GAAGAAGGCTCCATGCCCCTTCTTCATACTCTTTCTATTAATAGAT-GTCAAAAATTAAA 2579
Query 2995 -GAAGCTTCCGG 3005
|| ||||||||
Sbjct 2580 AGA-GCTTCCGG 2590
> Ahg914885 jgi|Araly1|914885|Al_scaffold_0001_5139
Length=2757
Score = 1221 bits (661), Expect = 0.0
Identities = 1373/1708 (80%), Gaps = 83/1708 (5%)
Strand=Plus/Plus
Query 148 GGAACTTATTTCGTTTGGTATACAAAACCTGTGGAACCTACTGAGTCAAGAATGCGAGCT 207
||||||| |||| ||||| |||||||| || ||| |||||||||| ||||||| ||||
Sbjct 9 GGAACTTGTTTCATTTGGAATACAAAAGCTTTGGGACCTACTGAGCCAAGAATACGAGAA 68
Query 208 ATTTCAGGGAGTCGAAGATCAAGTAACTGAACTAAAAAGGGATCTAAACATGTTAAGCTC 267
|||| ||||||| || |||||||||| |||||| ||| | || |||||| ||||||||||
Sbjct 69 ATTTGAGGGAGTTGATGATCAAGTAATTGAACTCAAACGTGAGCTAAACTTGTTAAGCTC 128
Query 268 TTTTCTGAAAGATGCAAATGCAAAGAAACATACAAGTGCGGTGGTGAAAAACTGTGTTGA 327
|||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 129 TTTTCTGAAAGATGCATATGCAAAGAAACACACAAGTGCGGTGGTGAGAAATTGTGTTGA 188
Query 328 AGAGATCAAGGAAATTATCTATGATG-GAGAGGATACAATCGAAACATTTGTTC-TTGAG 385
|||||||||||||||| | ||||| | | || |||| ||| ||||||| | || || ||
Sbjct 189 AGAGATCAAGGAAATTGTTTATGACGCG-GAAGATATAATTGAAACATAT-ATCATTAAG 246
Query 386 CAA-AACCTGGGAAAAACAAGTGGTATCAAGAAGAGTATCAGAAGACTTGCTTGCATTAT 444
|| ||| |||| ||||||||||| || ||||||||||| |||||| ||||||||||| |
Sbjct 247 GAAGAACTTGGG-AAAACAAGTGGAATAAAGAAGAGTATAAGAAGAATTGCTTGCATTGT 305
Query 445 TCCAGATCGGAGGAG-ATATGCATTAGGTATCGGAGGCTTAAGTAAT-AGGATCTCCAAG 502
| |||| || | ||| | ||||||||| ||| |||||| || || || |||||||| |
Sbjct 306 TTCAGACCGTA-GAGAAAATGCATTAGATATTGGAGGCATACGT-ATGAGGATCTCTGAT 363
Query 503 GTGATCCGAGATATGCAGAGTTTTGGAGTGCAACAAGCTATCGTTGATGGTGGGTATAAG 562
|| ||||||||||||||||||||||| || |||||| ||||| |||||||||||||| |
Sbjct 364 GTTATCCGAGATATGCAGAGTTTTGGGGTACAACAAATTATCGCTGATGGTGGGTATATG 423
Query 563 CAACCTCAAGGTGATAAACAAAGGGAGATGCGACAAAAATTTTCTAAGGACGACGACAGC 622
| || | | ||||| || ||| |||||| |||||| |||| ||| |||| |||| |||
Sbjct 424 CTACATGTACATGATAGACTAAGAGAGATGAGACAAACATTTCCTAGGGACTACGAAAGC 483
Query 623 GATTTTGTGGGGTTGGAGGCAAATGT-TA-AGAAA-TTGGTTGGATATTTGGTGGACGAA 679
||| ||||||||||||| | ||| || || | ||| |||||| ||||||||||| |||
Sbjct 484 GATCTTGTGGGGTTGGAAG-AAA-GTGTACA-AAAGTTGGTTACTTATTTGGTGGAAGAA 540
Query 680 GCA-AACGTTCAAGTGGTTTCCATAACCGGTATGGGTGGTCTAGGTAAAACCACACTTGC 738
| | || | |||||||| || |||||||| ||||||||| | || ||||| || || ||
Sbjct 541 G-ACGACATACAAGTGGTCTCAATAACCGGAATGGGTGGTGTTGGAAAAACTACCCTCGC 599
Query 739 TAAACAGGTTTTTAACCATGAGGA-TGTTAAACATCAGTTTGATGGGC-TCT-CATGGGT 795
|| ||| ||||||| || | | | ||||||||| |||||||| ||| | | | |||||
Sbjct 600 TAGACAAATTTTTAATCACG-GAACGGTTAAACATAAGTTTGAT-GGCAT-TGCTTGGGT 656
Query 796 GTGTGTTTCACAAGATTTTACCCGAATGAATGTATGGCAAAAGATCTTG-AGGGACCTCA 854
|||| |||||||||| ||||| || || |||| |||||| ||| ||| | | ||||||
Sbjct 657 GTGTATTTCACAAGAGTTTACACGTTTGCATGTGTGGCAAGCGATTTTGCA-GAACCTCA 715
Query 855 AACCCAAAGAGGAA-GAAAAGA--AAATCATGGAGATGAC-ACAAGATACACTCCAAGGT 910
|||| ||| ||| | ||||| |||| || | ||| | | ||| || |||||| |||
Sbjct 716 GACCC--AGA-GAAGGGAAAGATGGAATCTTGCATATG-CAAGAAGCTATACTCCAGGGT 771
Query 911 GAACTAATTCGATTGTTGGAAACGTCTAAGTCATTAATTGTCCTCGATGACATATGGGAA 970
||||| |||||||||| ||||| ||||| |||||||||||| | |||||||||| ||||
Sbjct 772 GAACTCTTTCGATTGTTAGAAACATCTAAATCATTAATTGTCTTTGATGACATAT-GGAA 830
Query 971 A-AAGAAGATTGGGAACTAATCAAGCCAATATTTCCACCGACCAAAGGTTGGAAAGTGTT 1029
| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct 831 AGAGGAAGACTGGGACCTAATCAAGCCAATATTTCCACCGGGAAAAGGTTGGAAAGTGCT 890
Query 1030 GCTTACTTCTCGAAATGAGAGTGTCGCCATGCGTAGAAATACATCATATATCAACTTTAA 1089
||| |||||||||||||| ||||| || | ||| || || || ||||||||||||||||
Sbjct 891 GCTAACTTCTCGAAATGAAAGTGTTGCTGTACGTGGAGATGCAACATATATCAACTTTAA 950
Query 1090 ACCAGAATGCCTAACCACTGAAGACAGTTGGACACTTTTTCAGAGGATAGCACTTCCTAT 1149
|||| ||||||||||| |||||| ||||||| ||||||||||| |||||| |||||
Sbjct 951 ACCACAATGCCTAACCGTTGAAGAAAGTTGGAAACTTTTTCAGAAAATAGCATTTCCTCG 1010
Query 1150 GAAAGATGCAGCT-GAATTTAAGATTGATGAGGAAAAGGAAGAGTTGGGTAAGCTAATGA 1208
||||||| | | |||| || | ||||| |||||| ||||||| ||||||||| |||||
Sbjct 1011 GAAAGATTTA-TTCGAATCTATGGTTGATAAGGAAATGGAAGAGATGGGTAAGCAAATGA 1069
Query 1209 TCAAACACTGTGGAGGG-TTACCATTGGCCA-TCAGAGTGTTAGGAGGTATGTTAGCTGA 1266
|||| || ||||| ||| || || |||| || ||| ||| ||||||||| ||||| || |
Sbjct 1070 TCAACCATTGTGG-GGGATTGCCTTTGG-CAGTCAAAGTATTAGGAGGTTTGTTATCT-A 1126
Query 1267 -AAAATACACATC-GCATGATTGGAGAAGATTATCTGAGAATATTGGATCTCATCTCGTG 1324
|||||||||| | |||||| |||| |||||||||| |||| ||| ||||||| | |||
Sbjct 1127 CAAAATACACA-CTGCATGACTGGAAAAGATTATCTAAGAACATTACATCTCATATAGTG 1185
Query 1325 GGAGGAAGAACTAACTTT-AATGACGACAACAACAATACATG-TAACAATGTATTGTCTC 1382
||| || ||| | ||| |||||| ||||| ||| | | | | || ||||||||||||
Sbjct 1186 GGA--AA-AACCGA-TTTCAATGACAACAACGACAGTTC-GGTTTACTATGTATTGTCTC 1240
Query 1383 TAAGCTTTGAAGA-ATTGCCAAGT-TATTTGAAGCATTGTTTCCTCTACTTGGCCCATTT 1440
| ||||||||||| || || | | |||||||||||||| ||||||||| | || |||||
Sbjct 1241 TCAGCTTTGAAGAGCTT-CCTA-TATATTTGAAGCATTGCTTCCTCTACCTAGCTCATTT 1298
Query 1441 TCCAGAAGATTATGAGATAAAGGTAGAGAACTTGTCATATTACTGGGCTGCAGAAGGAAT 1500
|||||||||||| |||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 1299 CCCAGAAGATTATCCGATAAATGTAGAGAAATTGTCGTATTATTGGGCTGCAGAAGGAAT 1358
Query 1501 ATTCC--AACCTAGGCATTACGATGGAGAGACCATTCGAGATGTTGGAGATGTCTACATA 1558
| || |||| ||| |||| || |||| ||||||| ||||||||| ||||| |||||||
Sbjct 1359 A--CCAAAACCAAGGTATTATGACGGAGCGACCATTAGAGATGTTGCAGATGGCTACATA 1416
Query 1559 GAGGAGCTGGTGAGGAGGAATATGGTCATTTCCGAAAGAGATGTAAAGACTTCGAGATTT 1618
|||||| |||||| ||| || | || ||| | |||||||| | | ||||| |||||||
Sbjct 1417 GAGGAGTTGGTGACGAGAAACGTTGTTATTGCGGAAAGAGACATTAGGACTTTGAGATTT 1476
Query 1619 GAAAC-TTGTCATTTGCATGACATGATGAGAGAAGTTTGTTTGT-TAAAAGCTAAAGAAG 1676
| ||| || ||| |||||||||||||||||||||||||||||| |||| || | |||||
Sbjct 1477 GTAACGTT-TCACTTGCATGACATGATGAGAGAAGTTTGTTTGGCTAAA-GCCAGAGAAG 1534
Query 1677 AAAACTTCCTACAAATTAC---C-AGTAGCCGCCCTTCAACTG-CAAACT-TGCAGTCTA 1730
| |||||| ||||| || | | | |||| ||| | | || | ||| | || |||
Sbjct 1535 AGAACTTCTTACAACTTTCTGTCGA-TAGCT-CCC--CGA-TGGCGCACTCT-CAATCTC 1588
Query 1731 C-TGTCACATCTCGCAGGTTTGTCTACCAATA-TCCTACTACTTTACATGTTGAGAA-AG 1787
| ||| | ||||||||| |||||| || | |||||||| |||||| || | || ||
Sbjct 1589 CCTGT-AGATCTCGCAGACTTGTCTTTCA-TGGTCCTACTAAATTACATATT-ACAAGAG 1645
Query 1788 ATATAAACAATCCAAAACTTCGAGCTCT 1815
||||||| ||||||||||||||| ||||
Sbjct 1646 ATATAAAAAATCCAAAACTTCGATCTCT 1673
> Ahg907577 jgi|Araly1|907577|Al_scaffold_0002_658
Length=2835
Score = 1044 bits (565), Expect = 0.0
Identities = 1313/1658 (79%), Gaps = 116/1658 (7%)
Strand=Plus/Plus
Query 1015 AGGTTGGAAAG-TGTTGCTTACTTCTCGAAATGAGAGTGTCGCCA-TGCGTAGAAATACA 1072
||||||| ||| || | ||||||||||| ||||||||||||| || | || | |||||
Sbjct 981 AGGTTGG-AAGATGCTACTTACTTCTCGGAATGAGAGTGTCG-CAGTACGCGGTGATACA 1038
Query 1073 TCATATATCAACTTTAAACCAGAATGCCTAACCACTGAAGACAGTTGGACACTTTTTCAG 1132
||| ||||||||||||| || ||||||||| |||||||| |||||||||||| ||||
Sbjct 1039 ACATTTATCAACTTTAAATCACAATGCCTAAGTACTGAAGAGAGTTGGACACTTCTTCA- 1097
Query 1133 A-GGATAGCACTTCCTATGAAAGATGCAGCTGAATTTAAGATTGATGAGGAAAAGGAAGA 1191
| |||||| |||| | |||||||||| | ||||||| | |||||||||||| ||||||
Sbjct 1098 ACTAATAGCATTTCCAAAGAAAGATGCATCCGAATTTATGGTTGATGAGGAAATGGAAGA 1157
Query 1192 GTTGGGTAAGCTAATGATCAAACACTGTGGAGGGTTACCATTGGCCATCAGAGTGTTAGG 1251
| |||||||| |||||| ||||| ||||| |||||||| ||||| |||| |||||||||
Sbjct 1158 GATGGGTAAGGAAATGATAAAACATTGTGGGGGGTTACCTTTGGCTATCAAAGTGTTAGG 1217
Query 1252 AGGTATGTTAGCTG-AAAA-ATACACATCGCATGATTGGAGAAGATTATCTGAGAATATT 1309
|||| | ||||||| |||| ||||| || |||||||||| |||| ||| | || |||||
Sbjct 1218 AGGTTTTTTAGCTGCAAAATATACA-AT-TCATGATTGGAAAAGAGTATTTAAGGATATT 1275
Query 1310 GGATCTCATCTCGTGGGAGGAAGAACTAACTTT-AATGACGACAACAACAATAC-ATGTA 1367
|||||| | | | | |||||||| || ||| |||||||| ||||||| | | || |
Sbjct 1276 GGATCTGGTAGCAT--G-GGAAGAACCAA-TTTAAATGACGATAACAACAGTTCGATAT- 1330
Query 1368 ACAATGTATTGTCTCTAAGCTTTGAAGAATTGCCAAGTTATTTGAAGCATTGTTTCCTCT 1427
|| ||||||||||| | ||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1331 ACCATGTATTGTCTATGAGCTTTGAAGAGTTGCCTAGTTATTTGAAACATTGTTTCCTCT 1390
Query 1428 ACTTGGCCCATTTTCCAGAAGATTATGAGATAAAGGTAGAGAAC-TTGTCATATTACTGG 1486
|| | ||| ||||||| |||||| |||| ||| | || | ||| ||||||||||| |||
Sbjct 1391 ACCTAGCCTATTTTCCCGAAGATGATGAAATAGATGT-GTCAACTTTGTCATATTATTGG 1449
Query 1487 GCTGCAGAAGGAATATTCCAACCTAGGCATTACGATGGAGAGACCATTCGAGATGTTGGA 1546
||||||||||||||| || |||||||| | || |||||||||||||||||||||||||||
Sbjct 1450 GCTGCAGAAGGAATACTCAAACCTAGGAAATATGATGGAGAGACCATTCGAGATGTTGGA 1509
Query 1547 GAT-GTCTACATAGAGGAGCTGGTGAGGAGGAATATGGTCATTTCCGAAAGAGAT-GTAA 1604
|| | ||||||||| ||| ||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1510 GACAG-CTACATAGACGAGTTGGTGAGGAGGAATATGGTTATTTCTGAAAGAGATAGTAG 1568
Query 1605 AGACTTCGAGATTTGAAACTTGTCATTTGCATGACA-TGATGAGAGAAGTTTGTTTGTTA 1663
|||||||||||||||||||||| | |||||||||| | ||||||||| | |||||||||
Sbjct 1569 -GACTTCGAGATTTGAAACTTGTAAATTGCATGACACT-ATGAGAGAACTCTGTTTGTTA 1626
Query 1664 AAAGCTAAAGAAGAAAACTTCCTACAAATTACCAGTAGCCGC-CCTTCAA-CTGCAAACT 1721
||||| ||||| || ||||||||||||||| || ||| |||| || | | | | | |||
Sbjct 1627 AAAGCCAAAGAGGAGAACTTCCTACAAATTGCCGGTACCCGCTCCC-CGATC-GTAGACT 1684
Query 1722 -TGCAGTCTACT-GTCACATCTCGCAGGTTTGTCTACCAATATCCTACTA-CTTTACATG 1778
| || ||| || || | |||||| ||| |||| | ||||| |||||||| ||| |||||
Sbjct 1685 CT-CAATCTCCTTGT-AGATCTCGTAGGCTTGTGTGCCAATCTCCTACTAACTT-ACATG 1741
Query 1779 TTGAGAAAGATATAAACAATCCAAAACTTCGAGCTCTCGTGGTTGT-T---AC--CT-TG 1831
|||||| ||| ||||| ||| ||||||||| ||||| | |||| | | || ||
Sbjct 1742 TTGAGAGAGACATAAATAATTGTAAACTTCGATCTCTCCTTATTGTCTTGGATTTCTATG 1801
Query 1832 G-GAA-GTTGGAACCTGGCAGGTTCAAGCTTTACA-AGGTTAGAACTTCTGAGGGTGTTA 1888
| ||| |||||| || ||||||||||||||| | || ||||||||||| |||||||||
Sbjct 1802 GTGAAAGTTGGATGCTATCAGGTTCAAGCTTTA-AGAGATTAGAACTTCTCAGGGTGTTA 1860
Query 1889 GATCT-TATTGAAGTGAAGATTAAAGGAGGGAAGTTAGCTTCTTG-CATTGGAAAGCTCA 1946
||||| ||| ||| | || || ||||||||||||| || | | ||||||||||||||
Sbjct 1861 GATCTCTATA-AAGCGGAGTTTCAAGGAGGGAAGTT-GCCTAAGGACATTGGAAAGCTCA 1918
Query 1947 TCCACTTAAGATACTTGAGCTTA-GAGTATGC-AGAGGTAACTCATATACCTTACT-CAC 2003
||||||||| |||||| |||||| ||| | || | ||||| ||||| |||||| || | |
Sbjct 1919 TCCACTTAAAATACTTAAGCTTAAGAG-AGGCTA-AGGTATCTCATCTACCTT-CTTCTC 1975
Query 2004 TAGGAAATCTGAAGTT-GTTGATCTATCTGAATTTA---GC-T-T-----CATTCGG-AA 2051
||||| | || || || | |||||||||| ||| || | | | |||| || ||
Sbjct 1976 TAGGAGACCT-AATTTTGCTGATCTATCTTAATATAAATGTATATATTGGCATT-GGCAA 2033
Query 2052 ---G-A-TCTACATTTGTGCCCAATGTCTTGATGGGGATGCAAGAACTGAGATACCTTGC 2106
| | |||| | ||||||| ||||| |||||||||||||||||| | |||||||||||
Sbjct 2034 TATGGAATCTATAATTGTGCCAAATGTTTTGATGGGGATGCAAGAATTAAGATACCTTGC 2093
Query 2107 GTTACCATCT-GATATGGGGA-GGAAGACAAAACTAGAATTGAGTAATCTAGTAAAATTG 2164
|||||| || | |||| | | ||| || || | ||||||||||| |||||||| |||
Sbjct 2094 ATTACCAACTTG-TATGAGTAAGGAC-ACGAAGTTGGAATTGAGTAAGCTAGTAAACTTG 2151
Query 2165 GAGACTTTAGA-GAATTTCTCAACAGAGAATAGCAGCTTGGAGGATCTTTGTGGTATGGT 2223
||||| || || ||||| | |||||||||| | || | | ||||||||| ||||||||||
Sbjct 2152 GAGACCTTGGAAGAATT-CACAACAGAGAACATCAACATAGAGGATCTTCGTGGTATGGT 2210
Query 2224 CAGGCTGAGCACGCTCAACATCAAATTAATTGAG-GAGACGAGTCTAGAAACTCTAGCTG 2282
|||||| || || || || | |||| | || || || | | | ||||||||| ||
Sbjct 2211 CAGGCTAAGGACTCTTGTGATGACTTTAACT-AGTGACACTACTGTGGAAACTCTATATG 2269
Query 2283 CATCTATAGGTGGA-TTGAAATACCTGGAAAAACTTGAAATATATGATCAC-GGTTCTGA 2340
|||| ||||||||| || | | |||||||||| ||||| || ||||||| |||| |||
Sbjct 2270 CATCAATAGGTGGACTT-AGACACCTGGAAAATCTTGAGGTAGCTGATCACAGGTT-TGA 2327
Query 2341 GATGAGGACGAAGGAAGCGGGAATCGTATTTGATTTCGTTCATCTCAAAAGGCTATG-GT 2399
| | | ||||| | || | | ||||| ||||||||||||||||||| | | || ||
Sbjct 2328 CA-G----C-AAGGA-G-GG-ACTTGTATTGGATTTCGTTCATCTCAAAAAG-T-TGAGT 2376
Query 2400 T-GAA-ACTGTATATGCCTAGG-CTTTCTACAGA-ACAACACTTCCCTTCTCACCTTACA 2455
| | | ||||||||| ||| ||| ||| | | ||||||| |||||||| ||||||||
Sbjct 2377 TTGCGTA-TGTATATGCA-AGGGCTTCCTAGA-ATACAACACCTCCCTTCTAACCTTACA 2433
Query 2456 ACCTTATATCTAGAAAGTTGTCGGTT-GGAAGAGGATCCCATGCCGATTCTAGAGAAGTT 2514
||| ||| |||||| ||||| |||| || ||||||||| |||||||||||||||||| |
Sbjct 2434 ACCATATCTCTAGACGGTTGT-GGTTTGGTAGAGGATCCGATGCCGATTCTAGAGAAGCT 2492
Query 2515 GCTACAGTTGAAA-GAGCTTGAATTAGGGTT-TGAATCTTTCAGTGGAAAGAAAATGGTT 2572
||| || || ||| ||| | ||||| || | |||||||| |||| | || |||||||
Sbjct 2493 GCTTCACTT-AAATGAGGTAAAATTAAT-TTATAAATCTTTCTGTGGGAGGAGAATGGTT 2550
Query 2573 TGCTCGAGCGG-TGGGTTTCCTCAATTGCA-AAGGCTT 2608
||||| || || ||| ||||||| ||| || ||| |||
Sbjct 2551 TGCTC-AGGGGGTGGATTTCCTCGATTACACAAG-CTT 2586
> Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577
Length=1827
Score = 211 bits (114), Expect = 3e-53
Identities = 322/416 (77%), Gaps = 39/416 (9%)
Strand=Plus/Plus
Query 2729 CCTTCTCACCTTACATCCATATCTCTAtt-tttttGTTGTTTGGAGAAAGATCCATTGCC 2787
||||||||||||||| |||||||||| || | ||| |||||| | | |||||| ||||
Sbjct 1426 CCTTCTCACCTTACAACCATATCTCT-TTGTGAATGTCGTTTGGTGGAGGATCCAATGCC 1484
Query 2788 GACTCTAG-GGAGATTGGTTTACTTGA-AAGAGCT-TCA-ATTAGGGTTTAG--AA-CTT 2840
| ||||| | || || || |||| | | || | ||| ||| ||||| || |||
Sbjct 1485 AATTCTAGAGAAG-CTGCTTAACTT-ATATGA--TGTCAGTTTA---TTTAGTCAATCTT 1537
Query 2841 TCAGTGGGAGGATAATGGTTTGCTCGGGCGGTGGGTTTCCTCAATTGCAGAAGCTT-TCA 2899
|| ||||||||| ||||||||||||||||||||||||||||| |||||||| || | |
Sbjct 1538 TCTGTGGGAGGAGAATGGTTTGCTCGGGCGGTGGGTTTCCTCGGTTGCAGAACCTAATGA 1597
Query 2900 ATATATCGGC-TAGAGGAATGGGAAGAGTGGATAGTAGAACAAGGCTCTATGCC-CTTTC 2957
||| | || |||| || ||||||||||||||||||||| ||||||| ||||| ||| |
Sbjct 1598 -TATGT-GGAATAGAAGAGTGGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCACTT-C 1654
Query 2958 TTCATACTCTCTATATC-GATGATTGTCCAAAGTTAAAG-AAGCTTCCGGATGGGCTGCA 3015
||||| | | | ||| | || |||||||||||| ||| || ||||| ||||| ||| |
Sbjct 1655 TTCATTTTTTGTTTATTAGTTG-TTGTCCAAAGTTTAAGGAA-CTTCCTGATGGTCTG-A 1711
Query 3016 -ATTTATCTA-TTCATTA-AAGAATTTGAAGATATCAGA-AAGATGGAAGGAGAGATTGT 3071
||||||| | ||| || |||| ||| || | | | ||| | |||||||| |||||
Sbjct 1712 GATTTATC-ACTTCCTTGCAAGAGCG-GAATAT-TGACACAAGTTTGAAGGAGAAATTGT 1768
Query 3072 CG-GAAGGAGGAGAAGAATATTACAAAGTCCAACACATTCCTTCT-GTT-GAATTC 3124
| || |||||||||||||| ||||||||||| ||||||||| || ||| || |||
Sbjct 1769 CCAGA-GGAGGAGAAGAATACTACAAAGTCCAGCACATTCCT-CTTGTTCGATTTC 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139633235337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5