BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59500.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475364 jgi|Araly1|475364|fgenesh2_kg.2__494__AT4G37390.1 2699 0.0
Ahg490882 jgi|Araly1|490882|fgenesh2_kg.7__315__AT1G59500.1 2410 0.0
Ahg481188 jgi|Araly1|481188|fgenesh2_kg.4__248__AT2G23170.1 1142 0.0
> Ahg475364 jgi|Araly1|475364|fgenesh2_kg.2__494__AT4G37390.1
Length=1806
Score = 2699 bits (1461), Expect = 0.0
Identities = 1686/1797 (94%), Gaps = 6/1797 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTTGATTCGCTTCTTCAATCTGGGATGGCTTCACCGACGACATCTGAGACAGAG 60
||||| |||||||||| |||||||||| |||| ||||||||||||||||| |||| |||
Sbjct 1 ATGGCCGTTGATTCGCCTCTTCAATCTCGGATAGCTTCACCGACGACATCCGAGAAAGAC 60
Query 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATTACTCGGAACCCTGACTCGGTTCAAGAAAAG 120
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 ATGAAGGCTCTCATGTTCATTGAGGAGATGACTCGGAACCCTGACTCGGTTCAAGAGAAG 120
Query 121 GTTCTTGGAGAGATACTTAGTCGTAACTCGAACACGGAATATCTGAAACGGTTCGATCTT 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GTTCTTGGAGAGATACTAAGTCGTAACTCGAACACCGAATATCTGAAACGGTTCGATCTT 180
Query 181 AATGGTGCCGTTGATAGGAAATCGTTCAAGAGCAAAGTTCCGGTGGTAATCTACGAAGAT 240
||||| ||||||||||||||| | ||||||||||||||||||||||| || |||||||||
Sbjct 181 AATGGGGCCGTTGATAGGAAAACTTTCAAGAGCAAAGTTCCGGTGGTTATGTACGAAGAT 240
Query 241 TTGAAGACGGATATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCTTCTCAT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TTGAAGACGGAGATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCCTCTCAC 300
Query 301 CCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGCGAGAGGAAATTAATGCCG 360
||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 301 CCCATCAACGAGTTTCTCACAAGCTCTGGAACATCTTCTGGTGAGAGGAAATTAATGCCG 360
Query 361 ACAATTGAAGAAGACATAAACCGACGTCAGCTTTTAGGCAATCTTCTCATGCCTGTGATG 420
|||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||
Sbjct 361 ACAATTGAAGAAGACATACACCGACGTCAGCTTTTAGGCAGTCTACTCATGCCTGTGATG 420
Query 421 AATCTCTACGTGCCGGGATTAGACAAAGGCAAAGGTTTATACTTCTTATTTGTGAAGTCG 480
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 AATCTCTACCTGCCGGGATTAGACAAAGGCAAAGGCTTATACTTCTTATTTGTGAAGTCG 480
Query 481 GAGTCTACGACATCAGGTGGGTTACCGGCTCGTCCAGCTCTCACTAGTTACTACAAAAGC 540
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GAGTCTAAGACGTCAGGTGGGTTACCGGCTCGTCCGGCTCTCACTAGTTACTACAAAAGC 540
Query 541 GACTACTTCAGGACGTCGGATTCAG-ACAGCGTCTACACTAGTCCTAAGGAAGCCATCCT 599
||| |||||| |||||| || || | | | || |||||||||||||| ||||||||||||
Sbjct 541 GACCACTTCAAGACGTCCGA-TCTGCAAAACGACTACACTAGTCCTAGGGAAGCCATCCT 599
Query 600 CTGCTGTGACTCGTCTCAAAGCATGTATACGCAAATGCTATGTGGTCTCTTAATGCGCCA 659
||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CTGCTCCGACTCGTCACAAAGCATGTATGCGCAAATGCTATGTGGTCTCTTAATGCGCCA 659
Query 660 TGAAGTTAACCGACTCGGTGCGGTGTTTCCTTCTGGTCTCCTCCGTGCCATAAGCTTCCT 719
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TGAAGTTCTCCGACTCGGTGCGGTGTTTCCTTCCGGTCTCCTCCGTGCCATAAGCTTCCT 719
Query 720 CCAGAACAATTGGAAGGAACTTTCTCAGGATATCTCAACCGGGACCCTAAGTTCTAAAAT 779
|||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 720 CCAGAATAATTGGAAGGAACTTGCTCAGGATATCTCAACCGGAATCCTAAGTTCTAAAAT 779
Query 780 CTTTGATCATGCGATTAA-AACTCGAATGTCGAATATTTTGAACAAACCTGATCAAGAAC 838
|||||||| |||| |||| ||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 780 CTTTGATCCTGCGGTTAACAAC-CGAATGTCGAAGATTTTGAACAAACCTGATGAAGAAC 838
Query 839 TGGCTGAGTTTTTGATAGGGGTTTGTTCGCAAGAGAATTGGGAAGGAATAATCACAAAGA 898
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 839 TGGCTGAGTTTTTGATAGGGGTTTGTTCACAAGAGAATTGGGAAGGGATAATCACAAAGA 898
Query 899 TATGGCCTAACACAAAGTACCTTGATGTGATTGTTACTGGTGCAATGGCTGAGTATATCC 958
||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 899 TATGGCCTAACACGAAGTACCTTGATGTGATTATTACTGGAGCAATGGCTCAGTATATCC 958
Query 959 CAATGTTGGAGTACTATAGCGGTGGGTTACCAATGGCAAGCATGATTTATGCTTCATCCG 1018
| ||||| ||||||||||||||||| ||||| || ||||||| ||| |||||||| || |
Sbjct 959 CGATGTTAGAGTACTATAGCGGTGGATTACCGATTGCAAGCACGATCTATGCTTCGTCGG 1018
Query 1019 AAAGTTACTTCGGGATTAACCTAAATCCGATGTGTAAACCCTCGGAGGTTTCTTACACAA 1078
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 AAAGTTACTTCGGGATTAACCTAAATCCCATGTGTAAACCCTCGGAGGTTTCTTACACAA 1078
Query 1079 TCTTCCCCAACATGGCCTACTTCGAATTCCTCCCACATAATCACGATGGAGATGGAGGAG 1138
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 TCATGCCAAACATGGCCTACTTCGAATTCCTCCCACATAATCACGATGGAGATGGAGCAT 1138
Query 1139 TAGAAGCAACCTCACTTGTGGAGCTAGCTGATGTTGAGGTTGGAAAGGAGTATGAACTTG 1198
|||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1139 TAGATGAAACCTCACTTGTGGAGCTAGCTGATGTTGAGGTCGGAAAAGAGTATGAACTCG 1198
Query 1199 TGATCACGACCTACGCGGGGCTCTACCGTTACAGAGTTGGCGACATTCTTC-GTGTCACG 1257
|||||||||||||||| ||||| |||||||||||||||||||||| || || ||||||||
Sbjct 1199 TGATCACGACCTACGCAGGGCTATACCGTTACAGAGTTGGCGACA-TCCTCTGTGTCACG 1257
Query 1258 GGGTTTCATAATTCCGCTCCACAGTTCAAATTCATACGGAGAGAGAATGTTTTGCTAAGC 1317
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 GGGTTCCATAATTCCGCTCCACAGTTCAAATTCATACGGAGAAAGAATGTTTTGCTAAGC 1317
Query 1318 ATTGAATCTGATAAAACAGACGAGGCTGATTTACAAAAGGCAGTGGAGAATGCGTCGAGG 1377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 ATTGAATCTGATAAAACAGACGAGGCTGATTTACAAAAGGCAGTGGACAATGCGTCGAGG 1377
Query 1378 TTGCTTGCAGAGCAAGGAACACGTGTGATCGAGTATACGAGCTACGCAGATACGAAGACT 1437
||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||
Sbjct 1378 TTGCTTGCAGAGCAAGGAACAAGTGTGATCGAGTACACGAGCTATGCAGAAACGAAGACT 1437
Query 1438 ATACCTGGTCATTACGTAATCTACTGGGAGCTACTTAGTAGAGACCAAAGCAATGCTCTT 1497
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1438 ATACCGGGTCATTACGTAATCTACTGGGAGTTACTTGGTAGAGACCAAAGCAATGCTCTT 1497
Query 1498 CCTAGTGACGAAGTCATGGCTAAGTGCTGTTTGGAGATGGAGGAATCGCTGAACGCGGTT 1557
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1498 CCTAGCGACGAAGTCATGGCTAAGTGCTGTTTGGAGATGGAGGAATCGCTGAACTCGGTT 1557
Query 1558 TATAGACAAAGTCGGGTTTCAGATAAATCTATCGGTCCGTTGGAGATACGTGTGGTGCAG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TATAGACAAAGTCGGGTTTCAGATAAATCTATCGGTCCGTTGGAGATACGTGTGGTGCAG 1617
Query 1618 AACGGCACGTTTGAGGAGCTCATGGACTTTTCCATCTCGAGAGGTTCATCGATTAATCAG 1677
||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1618 AACGGTACGTTTGATGAGCTCATGGACTATGCCATCTCGAGAGGTTCATCGATTAATCAG 1677
Query 1678 TATAAGGTCCCGAGGTGCGTAAGCCTCACACCGATCATGAAACTGCTTGACTCTAGAGTT 1737
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1678 TATAAGGTCCCGAGGTGCGTGAGCCTCACACCGATCTTGGAACTGCTTGACTCTAGAGTT 1737
Query 1738 GTGTCTGCTCATTTCAGCCCTTCGTTGCCGCATTGGTCGCCAGAACGACGTCATTAG 1794
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1738 GTGTCTGCTCATTTCAGCACTTCGTTGCCGCATTGGTCACCAGAACGACGTCATTAG 1794
> Ahg490882 jgi|Araly1|490882|fgenesh2_kg.7__315__AT1G59500.1
Length=1812
Score = 2410 bits (1305), Expect = 0.0
Identities = 1652/1818 (91%), Gaps = 30/1818 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGTTGATTCGCTTCTTCAATCTGGGATGGCTTCACCGACGACATCTGAGACAGAG 60
||||| |||||||||| |||||||||| |||||| |||||||||||| ||||||| |||
Sbjct 1 ATGGCCGTTGATTCGCCTCTTCAATCTCGGATGGTTTCACCGACGACCTCTGAGAAAGAT 60
Query 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATTACTCGGAACCCTGACTCGGTTCAAGAAAAG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATGACTCGGAACCCTGACTCGGTTCAAGAAAAG 120
Query 121 GTTCTTGGAGAGATACTTAGTCGTAACTCGAACACGGAATATCTGAAACGGTTCGATCTT 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 121 GTTCTTGGAGAGATACTAAGTCGTAACTCGAACACCGAATATCTGAAACGGTTCGATATC 180
Query 181 AATGGTGCCGTTGATAGGAAAT-CGTTCAAGAGCAAAGTTCCGGTGG-TAATCTACGAAG 238
||||| ||| ||||| || ||| ||||||||| |||||||||||||| || | |||||||
Sbjct 181 AATGGGGCCATTGATCGG-AATACGTTCAAGAACAAAGTTCCGGTGGTTACT-TACGAAG 238
Query 239 ATTTGAAGACGGATATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCTTCTC 298
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 ATTTAAAGCCGGAGATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGTCCTCTC 298
Query 299 ATCCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGCGAGAGGAAATTAATGC 358
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 ACCCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGTGAGAGGAAATTAATGC 358
Query 359 CGACAATTGAAGAAGACATAAACCGACGTCAGCTTTTAGGCAATCTTCTCATGCCTGTGA 418
||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 359 CGACAATTGAAGAAGACTTAGACCGACGTCAGCTTTTATACAGTCTTCTCATGCCTGTGA 418
Query 419 TGAATCTCTACGTGCCGGGATTAGACAAAGGCAAAGGTTTATACTTCTTATTTGTGAAGT 478
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 TGAATCTGTACGTGCCGGGATTAGACAAAGGCAAAGGCTTATACTTCTTATTTGTGAAGT 478
Query 479 CGGAGTCTACGACATCAGGTGGGTTACCGGCTCGTCCAGCTCTCACTAGTTACTACAAAA 538
||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 479 CGGAGTCTAAGACGTCAGGTGGGTTACCGGCTCGTCCAGTTCTCACGAGTTACTACAAAA 538
Query 539 GCGACTACTTCAGGA--CG-TCG---GATTCAG-ACAGCGTCTACACTAGTCCTAAGGAA 591
||||| ||||||||| || || || || | ||| |||||||||||||||||| |||
Sbjct 539 GCGACCACTTCAGGAGGCGACCGTACGA-TCCGTACAACGTCTACACTAGTCCTAACGAA 597
Query 592 GCCATCCTCTGCTGTGACTCGTCTCAAAGCATGTATACGCAAATGCTATGTGGTCTCTTA 651
||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||
Sbjct 598 GCCATCCTCTGCTCCGACTCTTCTCAAAGCATGTATGCTCAAATGCTATGTGGTCTATTA 657
Query 652 ATGCGCCATGAAGTTAACCGACTCGGTGCGGTGTTTCCTTCTGGTCTCCTCCGTGCCATA 711
||||||||||||||| |||||| || || |||||| |||| ||||||||||||||| ||
Sbjct 658 ATGCGCCATGAAGTTCTCCGACTAGGCGCCGTGTTTGCTTCAGGTCTCCTCCGTGCCTTA 717
Query 712 AGCTTCCTCCAGAACAATTGGAAGGAACTTTCTCAG-GATATCTCAACCGGG-ACCCTAA 769
||||| |||||||||||||||||||||||| ||| | |||||||||| |||| |||||||
Sbjct 718 AGCTTTCTCCAGAACAATTGGAAGGAACTTGCTC-GAGATATCTCAA-CGGGAACCCTAA 775
Query 770 GTTCTAAAATCTTTGATCATGCGATT-AAAACTCGAATGTCGAATATTTTGAACAAACCT 828
|||||| |||||| |||| | ||||| ||||| || ||||| || ||||||| |||||||
Sbjct 776 GTTCTAGAATCTTCGATCCTACGATTAAAAAC-CGCATGTCAAAGATTTTGATCAAACCT 834
Query 829 GATCAAGAACTGGCTGAGTTTTTGATAGGGGTTTGTTCGCAAGAGAATTGGGAAGGAATA 888
||||||||||| |||||||||||||| || |||||||||||||||| ||||||||| |||
Sbjct 835 GATCAAGAACTTGCTGAGTTTTTGATTGGTGTTTGTTCGCAAGAGAGTTGGGAAGGGATA 894
Query 889 ATCACAAAGATATGGCCTAACACAAAGTACCTTGATGTGATTGTTACTGGTGCAATGGCT 948
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 895 ATCACAAAGATATGGCCTAACACGAAGTACCTTGATGTGATTGTTACTGGTGCGATGGCT 954
Query 949 GAGTATATCCCAATGTTGGAGTACTATAGCGGTGGGTTACCAATGGCAAGCATGATTTAT 1008
|||||||||| | |||||||||||||||||| || ||||| ||||| ||| || |||
Sbjct 955 CAGTATATCCCGACGTTGGAGTACTATAGCGGCGGATTACCGATGGCTTGCACAATGTAT 1014
Query 1009 GCTTCATCCGAAAGTTACTTCGGGATTAACCTAAATCCGATGTGTAAACCCTCGGAGGTT 1068
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1015 GCTTCGTCCGAAAGTTACTTCGGGATTAACCTAAAGCCGATGTGTAAACCCTCAGAGGTT 1074
Query 1069 TCTTACACAATCTTCCCCAACATGGCCTACTTCGAATTCCTCCCACATAATCACGATGGA 1128
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1075 TCTTACACAATCATGCCCAACATGGCCTACTTCGAATTTCTCCCACATAATCACGATGGA 1134
Query 1129 GATGGAG-----G-AG------TAGAAGCAACCTCACTTGTGGAGCTAGCTGATGTTGAG 1176
||||||| | || |||| | |||||||||||| ||||||||||||||||||
Sbjct 1135 GATGGAGCAACAGAAGCATCATTAGACGAAACCTCACTTGTAGAGCTAGCTGATGTTGAG 1194
Query 1177 GTTGGAAAGGAGTATGAACTTGTGATCACGACCTACGCGGGGCTCTACCGTTACAGAGTT 1236
|| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 GTCGGAAAAGAGTATGAACTCGTGATCACAACCTACGCGGGGCTCTACCGTTACAGAGTT 1254
Query 1237 GGCGACATTCTTCGTGTCACGGGGTTTCATAATTCCGCTCCACAGTTCAAATTCATACGG 1296
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1255 GGCGACATTCTCCGTGTCACGGGGTTCCATAATTCCGCTCCACAGTTCAAATTCATACGA 1314
Query 1297 AGAGAGAATGTTTTGCTAAGCATTGAATCTGATAAAACAGACGAGGCTGATTTACAAAAG 1356
||| ||||||||||| ||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 1315 AGAAAGAATGTTTTGTTAAGCATCGAATCCGATAAAACCGACGAGGCTGAGCTACAAAAG 1374
Query 1357 GCAGTGGAGAATGCGTCGAGGTTGCTTGCAGAGCAAGGAACACGTGTGATCGAGTATACG 1416
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1375 GCAGTGGAGAATGCGTCGCGGTTGTTTGCAGAGCAAGGAACACGTGTGATCGAGTACACG 1434
Query 1417 AGCTACGCAGATACGAAGACTATACCTGGTCATTACGTAATCTACTGGGAGCTACTTAGT 1476
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1435 AGCTACGCAGAAACGAAGACTATACCGGGTCATTACGTAATCTACTGGGAGCTACTTGGT 1494
Query 1477 AGAGACCAAAGCAATGCTCTTCCTAGTGACGAAGTCATGGCTAAGTGCTGTTTGGAGATG 1536
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1495 AGAGACCAAAGCAATGCTCTTCCTAGCGAAGAAGTCATGGCTAAGTGCTGTTTGGAGATG 1554
Query 1537 GAGGAATCGCTGAACGCGGTTTATAGACAAAGTCGGGTTTCAGATAAATCTATCGGTCCG 1596
|||||||| || ||| |||||||||||||||| ||||| | |||||||| ||||||||
Sbjct 1555 GAGGAATCCCTAAACTCGGTTTATAGACAAAGCCGGGTCGCTGATAAATCGATCGGTCCA 1614
Query 1597 TTGGAGATACGTGTGGTGCAGAACGGCACGTTTGAGGAGCTCATGGACTTTTCCATCTCG 1656
|||||||||||||| ||||| ||||| |||||||||||||| ||||||| | ||||||||
Sbjct 1615 TTGGAGATACGTGTAGTGCAAAACGGTACGTTTGAGGAGCTTATGGACTATGCCATCTCG 1674
Query 1657 AGAGGTTCATCGATTAATCAGTATAAGGTCCCGAGGTGCGTAAGCCTCACACCGATCATG 1716
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1675 AGAGGCGCATCGATTAATCAGTATAAGGTCCCGAGGTGCGTGAGCTTCACACCGATCATG 1734
Query 1717 AAACTGCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCCCTTCGTTGCCGCATTGGTCG 1776
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1735 GAACTGCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCCCTTCATTGCCGCACTGGTCA 1794
Query 1777 CCAGAACGACGTCATTAG 1794
||||||||||||| ||||
Sbjct 1795 CCAGAACGACGTCGTTAG 1812
> Ahg481188 jgi|Araly1|481188|fgenesh2_kg.4__248__AT2G23170.1
Length=1901
Score = 1142 bits (618), Expect = 0.0
Identities = 1403/1772 (79%), Gaps = 94/1772 (5%)
Strand=Plus/Plus
Query 61 GTGAAGGCTCTCAAGTTCATTGAGGAGATTACT-CGGAACCCT-GA-CTCGGTTCAAGAA 117
||||||||||| | ||||||||||||||| | | || || | | || || |||| ||||
Sbjct 99 GTGAAGGCTCTGAGGTTCATTGAGGAGATGA-TACGTAA-CGTCGATTTC-GTTC-AGAA 154
Query 118 -AAGGTTC-TTGGAGAGATACTTAGTCGTAACTCGAACACGGAATATCTGAAACGGTTCG 175
|| | || || ||||||||||| |||| |||||| | || || || ||||||||||| |
Sbjct 155 TAAAG-TCATTAGAGAGATACTTCGTCGCAACTCGGAGACTGAGTACCTGAAACGGTTTG 213
Query 176 ATCTTAATGG-TGCCGTTGATAGGAAATCGTTCAAGAGCAAAGTTCCGGTGGTAATCTAC 234
||| || || | | ||| ||||| | || |||| ||||||||||||||| | ||||
Sbjct 214 GTCTCAAGGGAT-TCACTGACCGGAAAGCATTTAAGACCAAAGTTCCGGTGGTTACCTAC 272
Query 235 GAAGAT-TTGAAGA-CGGATATTCAACGTATATCCAACGGTGATCGTTCTCCGATCTTGT 292
|| ||| || || | |||| |||||||||||| |||| ||||| || ||| ||||||||
Sbjct 273 GATGATCTT-AA-ACCGGAGATTCAACGTATAGCCAATGGTGACCGGTCTATGATCTTGT 330
Query 293 CTTCTCATCCCATCACCGAGTTTCTCACAAGCTCTGGAACATCTGCTGGCGAGAGGAAAT 352
| || || |||||||||||||| |||||||||||||| ||||| ||||| || ||||| |
Sbjct 331 CATCACACCCCATCACCGAGTTCCTCACAAGCTCTGGGACATCAGCTGGTGAAAGGAAGT 390
Query 353 TAATGCCGACAATTGAAGAAGACATAAACCGACGTCAGCTTTTAGGCAATCTTCTCATGC 412
| ||||| || |||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 391 TGATGCCCACCATTGAAGAAGACATGGACCGACGTCAGCTTTTATACAGTCTTCTCATGC 450
Query 413 CTGTGATGAATCTCTACGTGCCGGGATTAGACAAAGGCAAAGGTT-TATACTTCTTATTT 471
|||||||||||||||||||||| ||||||||||||||||| || | |||| || || ||
Sbjct 451 CTGTGATGAATCTCTACGTGCCCGGATTAGACAAAGGCAA-GGCTCTATATTTTTTGTTC 509
Query 472 GTGAAGTCGGAGTCTACGACATCAGGTGGGTTACCGGCTCGTCCAGCTCTCACTAGTTAC 531
|||||| |||| || | |||| | ||||| |||||||| ||||| | |||||| |||||
Sbjct 510 GTGAAGACGGAATCGAAGACACCCGGTGGATTACCGGCACGTCCGGTTCTCACGAGTTAT 569
Query 532 TACAAAAGCGA-CTACTTCA-G-GACGTCG----GATTCAG-ACAGCGTCTACACTAGTC 583
||||||||||| | | |||| | |||||| ||| | | ||| ||| ||||| || |
Sbjct 570 TACAAAAGCGAACAA-TTCAAGAGACGTCCTTACGATCC-GTACAACGTGTACACGAGCC 627
Query 584 CTAAGGAAGCCATCCTCTG-CTGTGACTCGTCTCAAAGCATGTATACGCAAATGCTATGT 642
|||| |||||||| || || | |||||||| ||||||||||| || || ||||| |||
Sbjct 628 CTAACGAAGCCATTCTTTGTCCC-GACTCGTCCCAAAGCATGTACACTCAGATGCTTTGT 686
Query 643 GGTCTC-TTAATGCGCCATGAAGTTAACCGACTCGGTGCGGTGTTTC-CTTCTGGTCTCC 700
|||||| ||| |||| || ||||| ||| |||||||| || || | |||| |||||||
Sbjct 687 GGTCTCCTTA-TGCGTCACGAAGTCCTCCGTCTCGGTGCCGTCTT-CGCTTCCGGTCTCC 744
Query 701 TCCGTGCCATAAGCTTCCTCCAGAAC-AATTGGAAGGAACTTTCTCAG-GATATCTCAAC 758
|||| |||||| | ||||| || ||| |||||||| ||||| | || |||||||| ||
Sbjct 745 TCCGAGCCATAGGGTTCCTTCA-AACCAATTGGAAAGAACTCGC-CAACGATATCTCCAC 802
Query 759 CGGGACCCTAAGTTCTAA-AATCTTTGATCATGCGATTAAA-ACTCGAATGTCGAATATT 816
||| ||||||||||| || ||||| ||||| || |||||| | | ||||| || ||
Sbjct 803 CGGTACCCTAAGTTC-AAGAATCTCTGATCCGGCTATTAAAGAGA-GCATGTCCAAGATC 860
Query 817 TTGAACAAACCTGATCAAGAACTGGCTGAGTTTT-TGA-TAGGGGTTTGTTCG-CAAGAG 873
|||| |||||| || |||||||||||||| ||| | | | || | ||| | |||||
Sbjct 861 TTGACCAAACCGGACCAAGAACTGGCTGA-TTTCATAACTTCGG-TATGTG-GTCAAGAC 917
Query 874 AAT--T-GGGAAGGAATAATCACAAAGATATGGCCTAACACAAAGTACCTTGATGTGATT 930
||| | ||||||| || || || ||||| ||||||||||| ||||||||||| || ||
Sbjct 918 AATAATTGGGAAGGTATTATTACTAAGATTTGGCCTAACACTAAGTACCTTGACGTCATC 977
Query 931 GTTACTGGTGCAATGGCTGAGTATATCCCAATG-TTGGAGTACTATAGCGGTGGGTTACC 989
|||||||| || |||||| |||||||||| ||| ||| ||||||||||||| ||||||||
Sbjct 978 GTTACTGGAGCCATGGCTCAGTATATCCCGATGCTTG-AGTACTATAGCGGCGGGTTACC 1036
Query 990 AATGGCAAGCATGATTTATGCTTCATCCGAAAGTTACTTCGGGATTAACCT-AAATCCGA 1048
||||| ||| ||| ||||| || ||||| |||||||| ||||| ||| | ||| || |
Sbjct 1037 GATGGCTTGCACGATGTATGCATCCTCCGAGAGTTACTTTGGGATCAACTTGAAA-CCAA 1095
Query 1049 TGTGTAAACCCTCGGAGGTTTCTTACACAATCT-TCCCCAACATGGCCTACTTCGAATTC 1107
|||||||||| || |||||||||||||| || | | || ||||||||||||||||| ||
Sbjct 1096 TGTGTAAACCTTCTGAGGTTTCTTACACCAT-TATGCCAAACATGGCCTACTTCGAGTTT 1154
Query 1108 CTCCCACAT-AA-TCACGATGGAGATGGAGGAGTAGAAGCAACCTCACTTGTGGAGCTAG 1165
||||| ||| || || | | | ||| | | | | | |||||| |||||||
Sbjct 1155 CTCCCTCATGAAGTCCC-A---ACC-GGA--A--A-ATCCGA----ACTTGTAGAGCTAG 1200
Query 1166 CTGATGTTGAGGTTGG-AAAGGAGTATGAACTTGTGATCACGACCTACGCGGGGCTCTA- 1223
||||||| |||||||| |||| |||| || ||||||||||| ||||| || ||||| ||
Sbjct 1201 CTGATGTCGAGGTTGGGAAAG-AGTACGAGCTTGTGATCACAACCTATGCAGGGCT-TAA 1258
Query 1224 CCGTTACAGAGTTGGCGACATTCTTCGTGTCACGGGGTT-TCATAATTCCGCTCCACAGT 1282
|||||| |||||||| || ||||||| || || || || | | ||||||||||||||||
Sbjct 1259 CCGTTATAGAGTTGGTGATATTCTTCAAGTGACTGGATTCT-ACAATTCCGCTCCACAGT 1317
Query 1283 TCAAATTCATACGGAGAGAGAAT-GTTTTGCTAAGCATTGAATCTGATAAAACAGACGAG 1341
|||| || | ||||| || || |||||||| |||||||| || |||||||| || ||
Sbjct 1318 TCAAGTTTGTGCGGAG-GAAAAACGTTTTGCTTAGCATTGAGTCGGATAAAACCGATGAA 1376
Query 1342 GCTGATTTACAAAAGGCAGTGGAGAATGCGTCGAG-GTTGCTTGCAGAGCAAGGAACA-C 1399
||||| | |||||||| || |||||||| ||| | ||| |||| ||||||||||| | |
Sbjct 1377 GCTGAGCTCCAAAAGGCGGTTGAGAATGCATCG-GTGTTACTTGGAGAGCAAGGAA-ATC 1434
Query 1400 GTGTGATCGAGTATACGAGCTACGCAGATACGAAGACTATACCTGGTCATTACGTAATCT 1459
| ||||||||||| || ||||||||||| || |||||||||||||| ||||| || ||||
Sbjct 1435 GCGTGATCGAGTACACAAGCTACGCAGAGACAAAGACTATACCTGGCCATTATGTCATCT 1494
Query 1460 ACTGGGAGCTACTTAGTAGA-G-ACCAAAGCAATGCTCTTCCTAGTGACGAAGTCATGGC 1517
|||||||| | || || || | | |||| |||| | | || | |||||| ||||||||
Sbjct 1495 ACTGGGAGTTTCTG-GT-GAAGGATCAAACCAAT-C-CA-CCAAATGACGAGGTCATGGC 1549
Query 1518 TAAGTGCTGTTTGGAGATGGAGGAATCGCTGAACGCGGTTTATAGACAAAGTCGGGTTTC 1577
| |||||| ||||| |||||||| ||| ||||| | || |||||||||||||||||| |
Sbjct 1550 TCGGTGCTGCTTGGAAATGGAGGAGTCGTTGAACTCTGTGTATAGACAAAGTCGGGTTGC 1609
Query 1578 AGATAAATCTATCGGTCCGTTGGAGATACGTGTGGTGCAGAACGGCACGTTTGAGGAGCT 1637
||||| || || || || | ||||||||||||||| |||| || ||||| ||||||||
Sbjct 1610 GGATAAGTCGATAGGGCCACTCGAGATACGTGTGGTGAAGAATGGAACGTTCGAGGAGCT 1669
Query 1638 CATGGACTTTTCCATCTCGAGAGGTTCATCGATTAATCAGTATAAGGTCCCGAGGTGCGT 1697
|||||||| | ||||||||||||| | ||||| || ||||| ||||| ||| |||| ||
Sbjct 1670 CATGGACTATGCCATCTCGAGAGGAGCCTCGATCAACCAGTACAAGGTGCCGCGGTGTGT 1729
Query 1698 AAGCCTCACACCGATCA-TGAAACTGCTTGACTCTAGAGTTGTGTCTGCTCATTTCAGCC 1756
|| |||| || || | || | ||||||||||| || ||||| ||| | || ||||| |
Sbjct 1730 GAGTTTCACGCCAAT-AGTGGAGCTGCTTGACTCAAGGGTTGTATCTACACACTTCAGTC 1788
Query 1757 CTTCGTTGCCGCATTGGTCGCCAGAACGACGT 1788
| | ||||| |||||||| |||||||| |||
Sbjct 1789 CAGCTTTGCCACATTGGTCACCAGAACGCCGT 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5