BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59510.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475362 jgi|Araly1|475362|fgenesh2_kg.2__492__AT1G59510.1 1783 0.0
Ahg471130 jgi|Araly1|471130|fgenesh2_kg.1__1084__AT1G10150.1 412 3e-114
> Ahg475362 jgi|Araly1|475362|fgenesh2_kg.2__492__AT1G59510.1
Length=1397
Score = 1783 bits (965), Expect = 0.0
Identities = 1249/1379 (91%), Gaps = 48/1379 (3%)
Strand=Plus/Plus
Query 25 CACTTCTTGGTTCTACCTTCATTCATGTCTCTATCCAAATCTATCTGGTAACTCAAAATC 84
|||||||||||||||| |||||||||||||||| ||||||||||||||||| || |||
Sbjct 1 CACTTCTTGGTTCTACATTCATTCATGTCTCTACCCAAATCTATCTGGTAAATC-AAA-- 57
Query 85 ATCACTTCTTCTACTCAACAATTTCACAAT-CCC-ATCCCCA-AT-TTTACAATCCCTAG 140
|| | | || ||||||||||| ||| || | || || |||||||||||||
Sbjct 58 AT-A--------A---AA-AATTTCACAATCCCCAATTCTCATATCATTACAATCCCTAG 104
Query 141 ATCTC-C-CTCCCTCTTCAATTCGCTGTAGTTTTCATGGACCTTGTTCGATTGAGAGACA 198
||||| | || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 105 ATCTCTCTCTGAGTC-CCAATTTGCTGTAGTTTTCATGGACCTTGTTCGATTGAGAGACA 163
Query 199 TAGGTTCAATTTCACCTCAGAGAAGAAGGAAATGGCTGATTCTATTAGCGGTTTTCGGTG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TAGGTTCAATTTCACCTCAGAGAAGAAGGAAATGGCTGATTCTATTAGCGGTTTTCGGTG 223
Query 259 TTTCGGGTTACGGAGTTTACAGGGTTTACAATTCTCAATACATCGCTAAGAAGACGAAGC 318
|||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 224 TTTCGGGTTATGGAGTTTACAGGGTTTACAATTCTGAATACATCACTAGGAAGACGAAGC 283
Query 319 GTCTTATGAAACTCTTCTCAGGCATTGTTTCATTCGCCGAAATGGTCATCGATTCCGCGG 378
|||||||||| || ||| ||| |||||||||||||||||| |||| |||||||| ||||
Sbjct 284 GTCTTATGAAGCTATTCGGAGGTATTGTTTCATTCGCCGAATTGGTAATCGATTCGGCGG 343
Query 379 AGACGATAAGTATCGTTTCTCGAGATTTGAAAGAGTTTCTCGAATCAAATTCCCACGAAA 438
|||||||||| ||||||||||| ||||||||||||||||| || || |||| | || |
Sbjct 344 AGACGATAAGCATCGTTTCTCGGGATTTGAAAGAGTTTCTGGATTCGGATTCTGATGAGA 403
Query 439 TCCCTAATAGCTTGAAACAGCTATCGAAAATCACCAAATCAAAAGAGTTCACTGATTCTC 498
|||||||||||||||||||||| |||| || || ||||| ||||||||||||||||||
Sbjct 404 TCCCTAATAGCTTGAAACAGCTCGCGAAGATTACTAAATCGAAAGAGTTCACTGATTCTT 463
Query 499 TAGCTAGGGTTTCTGAAGCTGTAGCGATTGGTGTTTTCCGTGGGTATAA-TTC---C--G 552
||||||||||||||||||| || |||||||| |||||||| |||||||| ||| | |
Sbjct 464 TAGCTAGGGTTTCTGAAGCCGTGGCGATTGGGGTTTTCCGCGGGTATAATTTCGATCAGG 523
Query 553 A--T-CCAAACGTCGAAAAAGAATCGAATTTGAGTGTAGTTGATAGAGTTTTCTCAGAGG 609
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGTTGAAAAACGTCGAAAAAGAATCGAATTTGAGTGTAGTTGATAGAGTTTTCTCAGAGG 583
Query 610 AAGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGTTTTGCTAAGAATCTTGTTCTTGGAT 669
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 584 AAGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGAT 643
Query 670 TTTACTCTGGTGAGATTGAGATTGGTAGTGATGATTCTTTAAAACCTAGATGGATGAATT 729
|||||||||||||||||||||||| | |||| | ||| ||||||||||||||||||||
Sbjct 644 TTTACTCTGGTGAGATTGAGATTG--A-TGAT--T-CTTCAAAACCTAGATGGATGAATT 697
Query 730 TGCTTAGTGATGATAAGTGTAGAGAGCTTTTAGCAGATTGTATTGAGAGATTCACTAGCT 789
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 698 TGTTTAGTGATGGTAAGTGTAGAGAGCTTTTAGCTGATTGTATTGAGAGATTTACTAGCT 757
Query 790 CAGCTGTATCGGTGTATATCGATAAAACGGTTGGTGTTAATACTTATGATCAGATATTCG 849
|||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 758 CAGCGGTATCGGTGTATATCGAGAAAACCGTTGGGGTTAATACTTATGATCAGATATTCT 817
Query 850 CTGGTTTGACGAATCCGAAACATCGAGATAGTGCTCGAGATGTTCTTGTTTCGGTTTGTA 909
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 818 CTGGTTTGACGAATCCGAAACATCGAGATAGTGCTAGAGATGTTCTTGTTTCGGTTTGTA 877
Query 910 ATGGAGCTCTTGAGACGTTCATGAGAACTTCTCATGATGTCTTCACATCTTCAGGAGAGA 969
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 878 ATGGAGCTCTTGAGACTTTCATGAGAACTTCTCACGATGTCTTTACATCTTCAGGGGAGA 937
Query 970 AAACCGATTCCTCCTTGAGGAAGTCGGAGAATCGAGAA-AA-CG-GA------TGGGCAG 1020
|||||||||||||||| ||||||||||||||||||||| || || || ||||| |
Sbjct 938 AAACCGATTCCTCCTTAAGGAAGTCGGAGAATCGAGAAGAATCGAGAAACGGATGGGCTG 997
Query 1021 AGGCGCTTTCGACTACTTTAGCAGTGCCGAGTAATAGGAAGTTCATGTTTGATGTTACGG 1080
|||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 998 AGGCGCTTTCGACTACATTAGCAGTGCCAAGCAATAGGAAGTTTATGTTTGATGTTACGG 1057
Query 1081 GAAGAGTGACGCTAGAGACGATGAGATCAATTCTTGAGTTTGTAATCTTGAAAACGTCAC 1140
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1058 GAAGAGTGACGCTCGAGACAATGAGATCAATTCTTGAATTTGTAATCTTGAAAACGTCAC 1117
Query 1141 AAAGTTTTAAGAGGAGTTTGGATGTGATTCATGAAGAAGTTACAGAGAGAGGACGTCAAG 1200
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AAAGCTTTAAGAGGAGTTTGGATGTGATTCATGAAGAAGTTACAGAGAGAGGACGTCAAG 1177
Query 1201 TAGTTGGATACGTTGGTGCCAAATCTTCAGTGATAATCACTGTTTGTCTTGCGGTTTACT 1260
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TAGTTGGATACGTAGGTGCCAAATCTTCAGTGATAATCACTGTTTGTCTTGCGGTTTACC 1237
Query 1261 TTCACATCTTTAACCGCTTTGTTCGAGGCCCTCCGGTTTGTTTAAGCCAGCAATTCTAGT 1320
||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 1238 TTCACATCTTTAACCGCATTGTTCGAGGCTCTCCGGTTTACTTAAGCCAGCATTTCTAGT 1297
Query 1321 TAATCGGATCGATCTATTAGCTTGTTAGAGTTGTTAGGGACATTAGATCTTCAGCCTTC 1379
|| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1298 TA-TCGGATCGATCTTTTAGCTCGTTAGAGTTGTTAGGGACATTAGATCTTCAGCTTTC 1355
> Ahg471130 jgi|Araly1|471130|fgenesh2_kg.1__1084__AT1G10150.1
Length=1711
Score = 412 bits (223), Expect = 3e-114
Identities = 657/852 (77%), Gaps = 87/852 (10%)
Strand=Plus/Plus
Query 174 ATGGACCTTGTTCGATTGAGAGACATA-GGT-TCAATTTCACCTCAGAGAAGAAGGAAAT 231
||||||||| |||||||||| || | | ||| || ||| | ||||||||||||||||||
Sbjct 274 ATGGACCTTCTTCGATTGAGCGA-AAAGGGTATC-TTTTTATCTCAGAGAAGAAGGAAAT 331
Query 232 GGCTGA-TTCTATTAGCGGTTTTC-GGTGTTTC-GGGTTACGGAGTTTACAGGGTTTA-C 287
|||||| || || | || | |||| |||||||| || || |||| ||||| |||||| |
Sbjct 332 GGCTGATTTTTA-TGGC-GATTTCTGGTGTTTCTGGCTT-TGGAGCTTACAAGGTTTATC 388
Query 288 AATTCT-CAATAC-ATCGCTAAG-AAGACGAAGCGTCTTATGAAACTCTTCTCAGGCATT 344
||| | | || | |||| || || | |||||||||| | || || ||| || ||||
Sbjct 389 -ATT-TACCAT-CTGTCGC-GAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATT 444
Query 345 GTTTCAT-TCGCCGAAATGGTCATC-GATTCCGCGGAGACGATAAGTATCGTTTCTCGAG 402
|| || | | || ||| || || || ||||| || ||||| |||||||||| || ||||
Sbjct 445 GTCTC-TGTTGCTGAATTGATC-TCTGATTCAGCCGAGACCTTAAGTATCGTGTCACGAG 502
Query 403 ATTTGAAAGAG-TTTCTCGAA-TCAAATTCCCACGAAATCCCTAATAGCTTGAAACAGCT 460
| ||| ||| | |||||| || ||| |||| | |||||||||||||||||||| ||| |
Sbjct 503 ACTTG-AAGGGCTTTCTC-AATTCAGATTCAGATGAAATCCCTAATAGCTTGAAGCAGAT 560
Query 461 ATCGAAAATCACCAA-ATCAAAAGAGTTCACTGATTCTCTAGCTAGGGTTTCTGAAGCTG 519
|||| |||| ||| || || ||||| || ||||| || ||||||||||| | ||||
Sbjct 561 CGCGAAGATCA-CAACGTCGAATGAGTTTACGGATTCGCTTTCTAGGGTTTCTCAGGCTG 619
Query 520 TAG-CGATTGGTG-TTTTCCGTGGGTATAATTCCG-ATC--C-----A-AAC------G- 561
| | ||||||||| ||| |||||||| || |||| ||| | | ||| |
Sbjct 620 T-GACGATTGGTGCCTTT-CGTGGGTACAAATCCGAATCGTCTAGTAACAACGTTGGTGA 677
Query 562 -TC--GAA---A-AAG-AATCGAATTTGAGTGTAGTTGAT-AGAGTTTTCTCAGAGG-AA 611
|| ||| | ||| ||||| ||| |||||| ||||| || |||||||||||||
Sbjct 678 TTCAGGAATTGAGAAGAAATCGGATTCGAGTGTTCTTGATAAG-GTTTTCTCAGAGGCTG 736
Query 612 GGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGTTTTGCTAAGAATCTTGTTCTTGGATTT 671
||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 737 GGA-CTGGGTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGGTTT 795
Query 672 TACTCTGGTGAGATTGAGA-T--TG-G-TA-GTGA------TGATTCTTTA-A-A-ACCT 716
||||||||| || | |||| | || | | |||| |||||||| | | | ||||
Sbjct 796 TACTCTGGTAAGCTCGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCAGAGACACCT 855
Query 717 AGATGGATGAATTTGCTTAGTGATGATAAGTGTAGAGAGCTTTTAGCAGATTGTATTGAG 776
| |||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 856 AAATGGGTGAATTTGCTTTGTGATGATAAGTGTAGAGAGCTTTTAGCTGTTTGTATTGAG 915
Query 777 AGATTCACTAGCTCAGCTGTATCGGTGTATATC--GATAAAACGGTTGG-TGTTAATACT 833
|||||||| ||| | || | || ||||| |||| || || ||| | || | | ||||||
Sbjct 916 AGATTCACCAGCACTGC-G-ATTGGTGTGTATCTTGACAAGACGAT-GGATATCAATACT 972
Query 834 TATGATCAGATATTCGCTGGTTTGACGAATCCGAAACATCGAG-ATAGTGCTCGA-GATG 891
|||||||| || || | || ||||||||||||||||||| || |||||| || | || |
Sbjct 973 TATGATCAAATCTTTGAAGGCTTGACGAATCCGAAACATC-AGGATAGTG-TCAAAGACG 1030
Query 892 TTCTTGTTTCGGTTTGTAATGGAGCTCTTGAGACG-TTCATGAGAACTTCTCATGATGTC 950
|||||||||||||||||||||| |||||| |||| || | || || ||||| || ||
Sbjct 1031 TTCTTGTTTCGGTTTGTAATGGTGCTCTTCAGACTATTGTT-AGGACATCTCACGAAGTG 1089
Query 951 TTCACATCTTCA 962
|| |||||||||
Sbjct 1090 TTTACATCTTCA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5