BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59520.3
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475360 jgi|Araly1|475360|fgenesh2_kg.2__490__AT1G59520.1 2085 0.0
> Ahg475360 jgi|Araly1|475360|fgenesh2_kg.2__490__AT1G59520.1
Length=1516
Score = 2085 bits (1129), Expect = 0.0
Identities = 1337/1431 (93%), Gaps = 39/1431 (3%)
Strand=Plus/Plus
Query 1 CGCTCCGATTGACGCAACACGCCAAGATTTTGCCAACGCTAAAGCAAATCAGATCGAAGA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 3 CGCTCCGATTGACGCAACACGCCAACATTTTGCCAACGCTAAAGCAAATCAGATCGACGA 62
Query 61 TTTGTGCTCTCTTCTATCTCTCACTCGCATCGAATTCAGCAAAAATTA-AAATTGAAGAA 119
|||||| | || ||| | | | | | | || | || |||||||||| ||| ||||||
Sbjct 63 TTTGTG-T-TC-TCT-T-T-T-A-T--C-TC--ACTC-GCAAAAATTAGAAA-CGAAGAA 107
Query 120 CGAGTCAAAGATA--G--A-GAG-AGAAAAACCCTATTCGATCACGAGATCGTAAT---C 170
| ||||| ||||| | | || | |||||||||||||||||||||||||||||| |
Sbjct 108 CCAGTCAGAGATAGTGACACCAGAAAAAAAACCCTATTCGATCACGAGATCGTAATCCAC 167
Query 171 --A-ACGTTTTTAGCAGAATCATCGGAGGGTAG-AAAAAATGCTCAACGATGGCGAAGTA 226
| | | |||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 168 GAAGAAGAATTTAGCAGAATCATCGGAGGGTAGAAAAAAATGCTCAACGATGGAGAAG-A 226
Query 227 -ACTCCTTCTAGACATGAGATTCTGAGTATGGTGAAGAAGCACTCAAAGTCATTAGGAAA 285
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 227 GACTCCTTCTAGACATGAGATTCTGAGTATGGTTAAGAAGCACTCAAAGTCATTAGGAAA 286
Query 286 GACGTCTCTTGATGAGCAAGATGCGTCTGATGTAGAAATGGACTCTAATTTCTGGCATGG 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GACGTCTCTTGATGAGCAAGATGCGTCTGATGTAGAAATGGACTCTAATTTCTGGCATGG 346
Query 346 TGTGTTTGATGTGTACTTTGTTCGTTGCATGGAGTCGAGGAGGCGACAAGACGATGATCT 405
|||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 347 TGTGTTTGATGTTTACTTCATTCGTTGCATGGAGTCAAGGAGGCGGCAAGACGATGATCT 406
Query 406 TCTGTTTTTTGTCAGGAAATTGAGCTGTAAGTCATATGGTTTGACTGAAAATGAGGATGC 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 407 TCTGTTTTTTGTCAGGAAATTGAGCTGTAAGTCATATGGTTTGACTGAAAATGAAGAAGC 466
Query 466 ACCAGCTCCTTACTTTGTACGCAGGTGGGCACCTAAGTTAGATGAGCTGCTTGGTGAAAG 525
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 467 ACCGGCTCCTTACTTTGTGCGCAGGTGGGCACCTAAGTTGGATGAGCTGCTTGGTGAAAG 526
Query 526 TCTGGCTGAAGTTGATTGGAGGAAATCATTTTATTTGAACATGATTGCCCACACATCGT- 584
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 527 TCTGGCTGAAGTTGATTGGAGAAAATCATTTTATTTGAACATGATTGCTCACACATCATA 586
Query 585 TCACTGTTACTGTTGCGATTTGCAGTAATGAGGCCCTTAAGACGTACCAAGGAAGTAAAG 644
| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 T-ACTGTTACAGTGGCTATTTGCAGTAATGAGGCCCTTAAGACGTACCAAGGAAGTAAAG 645
Query 645 ACACAAAACTATCTCCTATATACAAGGTTGTAAAAACTGTATATGCATCACCTAGTCGTG 704
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ACACAAAACTCTCTCCTATATACAAGGTTGTAAAAACTGTATATGCATCACCTAGTCGTG 705
Query 705 TTAATTTTCATCTGGACTCAAAGAAGGCAA-TGGAAACAACACCTGCCTACCCAGAAATT 763
|||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 706 TTAATTTTCATCTGGACTCAAAAAAGG-AAGTGGAAACAACACCTGCCTACCCAGAAATT 764
Query 764 TGTTTTGCCGTAGATGATTTTGACTCAACCTTTGATGCTGTGGTTCTGACAGATAAAGAT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 TGTTTTGCCGTAGATGATTTTGACTCAACCTTTGATGCTGTGGTTCTGACAGAAAAAGAT 824
Query 824 CATTGCTATTGCGTACTACTTAATTCTCACGATGGGGCAGCCTTTCCAAGTGCAACTGTT 883
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 825 CATTGCTATTGCGTACTACTAAATTCTCACGATGGGGCAGCCTTTCCAAGTGCAACTGTT 884
Query 884 AAAGATTCGAGTGATTCTAATACGAATGCTGACCCTAGAACTGTGAAAGATCCTAAGGTT 943
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 885 AAAGATTCAATTGATTCTAATACGAATGCTGACCCTAGAAGTGTGAAAGATCCTAAGGTT 944
Query 944 ACTCTGTTTTCTGGGTTTGTCAGCTATCAGATGGTTCGAGAAGCCTATGAAGGGGGGAGG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 945 ACTCTGTTTTCTGGGTTTGTCAGCTATCAGATGGTTCGAGAAGCCTATGAAGGGGAGAGG 1004
Query 1004 AATCGGTTTGGAAGTCTCCTATCTCTCGGTCATATTACAGGAAAAGCAGACAGACTTTAT 1063
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1005 AATCGGTTTGGAAGTCTCCTATCACTCGGTCATAATACAGGAAAAGCAGACAGACTTTAT 1064
Query 1064 ATGAGAGGCCCAGGAGGACGTGGAGAAGTTGAAGTAGCTGTTTCTGGCGTTGTAGATCAG 1123
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1065 ATGAGAGGTCCAGGAGGACGTGGAGAAGTTGAAGTAGCTGTTTCTGGCGTTATAGATCAG 1124
Query 1124 AGCCAAGTAGTTTTAGGGCCTGTTTCACCTATGTCTTCAAAGAAGAGCATCGATCTCGGA 1183
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1125 AGCCAAGTAGTTTTAGGTCCTGTTTCACCAATGTCTTCAAAGAAGAGCATCGATCTCGGC 1184
Query 1184 TCCATTTTCCGTAAAGCAGCCTCTGTTGCATCTGTCGCAGCTAAACATGCAATAGCAGCT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCCATTTTCCGTAAAGCAGCCTCTGTTGCATCTGTCGCAGCTAAACATGCAATAGCAGCT 1244
Query 1244 GCTACTGCCTCTTATGATGAAGACGAGATGTTCCCTCTTAAATGCTGCTTAATGTCCATT 1303
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GCAACCGCCTCATATGATGAAGACGAGATGTTCCCTCTTAAATGCTGCTTAATGTCCATC 1304
Query 1304 TCATTACCATGGGACACTATTGCTCATGATCTTTTATTCAAGGCA--A-CTCCACCAGTC 1360
|| ||||| |||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1305 TCGTTACCGTGGGACACTATTGCTCATGATCTTTTATTCAAGGTACCATCTCCACCAGTA 1364
Query 1361 AACATGGAGTAGCACACTCTGGAATGAAGCGTAGGAAACAGAAGTTTGTGT 1411
|||||||||||| ||| |||||||||||||||||||||||||| ||| |||
Sbjct 1365 AACATGGAGTAGAACATTCTGGAATGAAGCGTAGGAAACAGAATTTT-TGT 1414
Score = 163 bits (88), Expect = 3e-39
Identities = 102/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1433 tttttGTACTTTGATTGAATATTCCTTTTGTGATGTTACTCGACTATGTGGTTTACCACA 1492
|||||||||| |||| |||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1408 TTTTTGTACTCTGATGGAATATTCCTTTTGTGCTGTTACTTGACTAAGTGGTTTACCACA 1467
Query 1493 ACCACTGTTATTACCTCAAGGAATAAATGAAAGTAAAGTTGTGAATTTG 1541
|||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1468 ACCACTGTTATTACCTCAAGGAATAAATGAAAGTGAAGTTGTGATTTTG 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5