BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G59530.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475358 jgi|Araly1|475358|fgenesh2_kg.2__488__AT1G59530.1          538    1e-152


> Ahg475358 jgi|Araly1|475358|fgenesh2_kg.2__488__AT1G59530.1
Length=429

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 385/430 (90%), Gaps = 7/430 (2%)
 Strand=Plus/Plus

Query  23   CGGTTCATAACTGC-TTCA--ATGATGCTACGATAACCGGTGATGAAATCATTGATATAT  79
            ||||||||| |||| || |  || ||| ||||||||||||||||||||||| ||| ||||
Sbjct  2    CGGTTCATATCTGCTTTGATGATCATGATACGATAACCGGTGATGAAATCACTGAAATAT  61

Query  80   TGGCGTTTCTTCAATCAGACGAGTCGGACAATCCAAGCGGTATAAACGAGGTAGTACCGG  139
            |||||||||||||||||||||||||||  | |||||| |||| ||||||  |||||||||
Sbjct  62   TGGCGTTTCTTCAATCAGACGAGTCGGGTATTCCAAGTGGTACAAACGAATTAGTACCGG  121

Query  140  TGGATGATAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCCAAGAGATCGAGGA  199
            | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  122  TTGATGAGAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCAAAGAGATCGAGGT  181

Query  200  TGAAAAAGAAGAAACGTTTTGAAGAGTTAACTGAAGAGGTGAACCGGTTAAAC-ATAAGA  258
            |||| |||||||||||||||||||||||||| ||||| ||||||||| | ||| | ||| 
Sbjct  182  TGAAGAAGAAGAAACGTTTTGAAGAGTTAACCGAAGAAGTGAACCGGCTGAACCA-AAGG  240

Query  259  AATCAGGAGCTGAAAAACCGGTTAGCTAATGTTGTTAGTTGTGGTAATTTTATATCTAGG  318
            ||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| 
Sbjct  241  AATGAGGAGTTGAAAAACCGGTTAGCTAATGTGGTTAGTTGTGGTAATTTCATATCTAGT  300

Query  319  GAGAATAACCGGTTGAAAACCGAATCGGTTTGCCTTGAGATAAGGCTTTTAGAGTTGTAC  378
            ||||||||||| || |||||||||||||| |||||||| || |||||| |||||||||||
Sbjct  301  GAGAATAACCGCTTAAAAACCGAATCGGTCTGCCTTGAAATTAGGCTTCTAGAGTTGTAC  360

Query  379  CGTTTTTTAGTGGCCATGCAATCGCCAATCTCAACGAGTGTAAATTACATCACA-ACGCT  437
            || |||||||||||||| ||||||||||||||||| || ||||||||||||||| | |||
Sbjct  361  CGGTTTTTAGTGGCCATTCAATCGCCAATCTCAACTAGAGTAAATTACATCACAGA-GCT  419

Query  438  CGAGATTTAA  447
            ||||||||||
Sbjct  420  CGAGATTTAA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5