BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59530.1 Length=447 Score E Sequences producing significant alignments: (Bits) Value Ahg475358 jgi|Araly1|475358|fgenesh2_kg.2__488__AT1G59530.1 538 1e-152 > Ahg475358 jgi|Araly1|475358|fgenesh2_kg.2__488__AT1G59530.1 Length=429 Score = 538 bits (291), Expect = 1e-152 Identities = 385/430 (90%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 23 CGGTTCATAACTGC-TTCA--ATGATGCTACGATAACCGGTGATGAAATCATTGATATAT 79 ||||||||| |||| || | || ||| ||||||||||||||||||||||| ||| |||| Sbjct 2 CGGTTCATATCTGCTTTGATGATCATGATACGATAACCGGTGATGAAATCACTGAAATAT 61 Query 80 TGGCGTTTCTTCAATCAGACGAGTCGGACAATCCAAGCGGTATAAACGAGGTAGTACCGG 139 ||||||||||||||||||||||||||| | |||||| |||| |||||| ||||||||| Sbjct 62 TGGCGTTTCTTCAATCAGACGAGTCGGGTATTCCAAGTGGTACAAACGAATTAGTACCGG 121 Query 140 TGGATGATAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCCAAGAGATCGAGGA 199 | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 122 TTGATGAGAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCAAAGAGATCGAGGT 181 Query 200 TGAAAAAGAAGAAACGTTTTGAAGAGTTAACTGAAGAGGTGAACCGGTTAAAC-ATAAGA 258 |||| |||||||||||||||||||||||||| ||||| ||||||||| | ||| | ||| Sbjct 182 TGAAGAAGAAGAAACGTTTTGAAGAGTTAACCGAAGAAGTGAACCGGCTGAACCA-AAGG 240 Query 259 AATCAGGAGCTGAAAAACCGGTTAGCTAATGTTGTTAGTTGTGGTAATTTTATATCTAGG 318 ||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 241 AATGAGGAGTTGAAAAACCGGTTAGCTAATGTGGTTAGTTGTGGTAATTTCATATCTAGT 300 Query 319 GAGAATAACCGGTTGAAAACCGAATCGGTTTGCCTTGAGATAAGGCTTTTAGAGTTGTAC 378 ||||||||||| || |||||||||||||| |||||||| || |||||| ||||||||||| Sbjct 301 GAGAATAACCGCTTAAAAACCGAATCGGTCTGCCTTGAAATTAGGCTTCTAGAGTTGTAC 360 Query 379 CGTTTTTTAGTGGCCATGCAATCGCCAATCTCAACGAGTGTAAATTACATCACA-ACGCT 437 || |||||||||||||| ||||||||||||||||| || ||||||||||||||| | ||| Sbjct 361 CGGTTTTTAGTGGCCATTCAATCGCCAATCTCAACTAGAGTAAATTACATCACAGA-GCT 419 Query 438 CGAGATTTAA 447 |||||||||| Sbjct 420 CGAGATTTAA 429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16139814147 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5