BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59550.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907546 jgi|Araly1|907546|Al_scaffold_0002_627 1114 0.0
Ahg890933 jgi|Araly1|890933|Al_scaffold_0007_2919 420 1e-116
> Ahg907546 jgi|Araly1|907546|Al_scaffold_0002_627
Length=918
Score = 1114 bits (603), Expect = 0.0
Identities = 831/937 (89%), Gaps = 32/937 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGTAACTATCAGAGAACACTGGTCTCAGCTTTCCTCAATATCTCTGTAGATCAA 60
||||||||| || | ||||||| |||||||||| |||||||| | ||| |||||||||||
Sbjct 1 ATGGAGAGTGACCACCAGAGAAAACTGGTCTCATCTTTCCTCGAGATCGCTGTAGATCAA 60
Query 61 ACTGTGGAAACCGCTATAAAGTGTCTAAA-GTCTACAAATTGGAAGCTTGAAGATGCCAT 119
|| |||||||||||||||||||| ||||| | | |||||||||||| ||||||| |||||
Sbjct 61 ACCGTGGAAACCGCTATAAAGTGCCTAAACG-CAACAAATTGGAAGGTTGAAGAAGCCAT 119
Query 120 CAATCTCTTATTTGC-CATCGACAGAATGAGAAATAATCAAACTTTGACACTAAAACCTT 178
|||||||| ||| | ||||||||| | || | || ||| ||| ||||| ||||||||
Sbjct 120 TAATCTCTTCTTT-CTCATCGACAG-A--AG--A-AACCAATCTTCGACACAAAAACCTT 172
Query 179 CCGA--C-TCTACTAGATTGCCTTCCTTGTCTCCTCCTCCTCCTCTAAATCTGCTTTTTA 235
| || | ||||||| |||| |||||||| | | | |||| |||||||||||||||| |
Sbjct 173 CTGATTCTTCTACTAAATTGTCTTCCTTG--TAC-CGTCCTTCTCTAAATCTGCTTTTCA 229
Query 236 ATGGTTCGTTCGAAGACGCGAAA-CTAGCTTCTTCTAGCAAAGATCTATGGTTGCTTGTT 294
| |||||||| |||||||||||| | | |||| |||||| ||||||| ||||||||||||
Sbjct 230 ACGGTTCGTTTGAAGACGCGAAAGC-AACTTCCTCTAGCGAAGATCTGTGGTTGCTTGTT 288
Query 295 CATATCCAATCCGAAACTGAGTTTCCTTGTAATACATTTAACCGAGATTTATGGTCAAAC 354
|| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 289 CACATCCAATCCAAAACTGAGTTGCCTTGTAATACACTTAACCGAGATTTATGGTCAAAC 348
Query 355 GAAGACGTTTCTCAAGCCCTTGAGTTTAGGGGCGAGATTAAAGCTAAGGGTTTTCTTAAG 414
|| |||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 349 GACGACGTTTCTCAAGCCCTTGAGTTTAGCGGCGAGATTAAAGCTCAGAGTTTTCTTGAG 408
Query 415 GATTTGAAGAAGTATATTGATGCTAGTCCTCACGAACA-TATTGCTTCTACGGCAAGGAA 473
||||||||||||||||||||||||| |||||||||| | | ||||||||| |||||||||
Sbjct 409 GATTTGAAGAAGTATATTGATGCTACTCCTCACGAATACT-TTGCTTCTATGGCAAGGAA 467
Query 474 CATGCGCGTAAAAGCAGAAAAGATTTGCCACTC-TGATCAACAAGACATGGGGAATTTGT 532
||||||||||||| || ||||||||||||| || |||| | |||||||| ||| || |
Sbjct 468 CATGCGCGTAAAAACAAAAAAGATTTGCCA-TCTTGAT---CGAGACATGGTGAA-TTCT 522
Query 533 -CATCAGATAGCGTCGTGGTTTCTTCTTGCGGGCGAGAATTTGATGATG---TAGTGACT 588
| |||||| |||||||||||||||||| ||||| ||||||||| |||| || |||||
Sbjct 523 CCGTCAGATCGCGTCGTGGTTTCTTCTTCCGGGCAAGAATTTGAAGATGTAATAATGACT 582
Query 589 TTATCCGAAGATGAGGAGGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCAGTTTTG 648
||||||||| |||||||||||||||||||||||||| || ||||| ||||||| ||||||
Sbjct 583 TTATCCGAACATGAGGAGGAAACTTGTTTGTCAAGCAACATGTTTAAGTTCCCGGTTTTG 642
Query 649 ACAAAAGAGCCTAAAGGAGACTGTGATCGAAGCGTTGTCTGTAGTATCAGCGTTCGATTT 708
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 643 ACAGAAGAGCCTAAAGGAGACTGTGATCGAAGTGTTGTCTGCAGTATCAGCGTTCAATTT 702
Query 709 CCAAATGGGAGAAGAAAGCAGAGAAAGTTTCTCAAGAGTGAACCGGTTCAGCTTCTCTGG 768
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 703 CCAAATGGGAGAAGAAAGCAGAGAAAGTTTCTTAAGAGTGAACCGATTCAGCTTCTCTGG 762
Query 769 TCTTTCTGTTATTCTCACATGGATGAATCAGATAACAAGGCGTTCAAGCTAGTGCAGGCG 828
||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 763 TCTTTCTGTTATTCTCACATGGAGGAATCAGAGAAGAAGGCGTTCAAGCTAGTGCAAGCG 822
Query 829 ATTCCTGGTGCTTCCAAGACTCTGGATTATGGAGCTGAAG-CCTCGTTTGATCAATATGG 887
|||||||||||||||||||||||| ||||||||||| ||| || |||||||||||| |||
Sbjct 823 ATTCCTGGTGCTTCCAAGACTCTGCATTATGGAGCT-AAGGCCACGTTTGATCAATCTGG 881
Query 888 GATCGCTAATTCGATCATCTCGGTTACTTGGGAGTGA 924
|||||||||||||||||| ||||||||||||||||||
Sbjct 882 GATCGCTAATTCGATCATTTCGGTTACTTGGGAGTGA 918
> Ahg890933 jgi|Araly1|890933|Al_scaffold_0007_2919
Length=2085
Score = 420 bits (227), Expect = 1e-116
Identities = 322/369 (87%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 543 CGTCGTGGTTTCTTCTTGCGGGCGAGAATTTGATGATGTAGTGACTTTATCCGAAGATGA 602
||| |||| | ||||||| |||| ||||||||| || || |||||||||||| ||||
Sbjct 732 CGTTGTGGCTCCTTCTTGGGGGCAAGAATTTGAAGACATAAAGACTTTATCCGACCATGA 791
Query 603 GGAGGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCAGTTTTGACAAAAGAGCCTAA 662
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 792 GGAGGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCGGTTTTGACAGAAGAGCCAAA 851
Query 663 AGGAGACTGTGATCGAAGCGTTGTCTGTAGTATCAGCGTTCGATTTCCAAATGGGAGAAG 722
|| |||||||||| ||||| |||| || ||| | |||||||||||||| |||| |||||
Sbjct 852 AGAAGACTGTGATAGAAGCATTGTGTGCAGTTTGTGCGTTCGATTTCCAGATGGAAGAAG 911
Query 723 AAAGCAGAGAAAGTTTCTCAAGAGTGAACCGGTTCAGCTTCTCTGGTCTTTCTGTTATTC 782
||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||||
Sbjct 912 AAAGCAGAGGAAGTTTCTCAAGAGCGAACCAATACAACTTCTCTGGTCTTTCTGTTATTC 971
Query 783 TCACATGGATGAATCAGATAACAAGGCGTTCAAGCTAGTGCAGGCGATTCCTGGTGCTTC 842
||||||||| ||||| || || |||||||||| ||| |||||||||||||||||||||||
Sbjct 972 TCACATGGAGGAATCCGAGAAGAAGGCGTTCAGGCTTGTGCAGGCGATTCCTGGTGCTTC 1031
Query 843 CAAGACTCTGGATTATGGAGCTGAA-GCCTCGTTTGATCAATATGGGATCGCTAATTCGA 901
|||||||||||||||||||||| || | | |||||||||| | |||| | ||||||||||
Sbjct 1032 CAAGACTCTGGATTATGGAGCT-AATGTCACGTTTGATCACTCTGGGCTTGCTAATTCGA 1090
Query 902 TCATCTCGG 910
| || ||||
Sbjct 1091 TGATTTCGG 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5