BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59560.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338432 jgi|Araly1|338432|fgenesh1_pg.C_scaffold_2000531 1088 0.0
> Ahg338432 jgi|Araly1|338432|fgenesh1_pg.C_scaffold_2000531
Length=954
Score = 1088 bits (589), Expect = 0.0
Identities = 735/805 (91%), Gaps = 12/805 (1%)
Strand=Plus/Plus
Query 143 ATGATACATTTGGCTGGATTTACATGTTGCTTAGGCGGCGTCGCTCTTTATCTTCTTA-C 201
||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| | |
Sbjct 1 ATGATACATTTGGCTGGATTTACGTGTTGTTTAGGCGGCATCGCTCTTTATCTTCTCAGC 60
Query 202 CAGGAGCACAGGCAGAGATATCAAATCAATCACTAGGGTTTACCAACTCAAGGATTTGGA 261
| ||| ||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||
Sbjct 61 C-GGAACACAGGCGGAGTTGTCAAATCAATCACTAGGGTTAACCACCTCAAGGATTTGGA 119
Query 262 ACAATTAGTAGAAGTAGAGAGCAAGGTGGTACCTTTGATCATCGCAGTATCAGGAGA-TG 320
|||| | | | ||||||||||||||| | ||||||||||| |||||||||||| | ||
Sbjct 120 ACAA-T--T-G--GTAGAGAGCAAGGTGTTTCCTTTGATCATAGCAGTATCAGGA-ATTG 172
Query 321 TTGGCTCTGAGACTCCTATTAAGTGTGAGCATAGTTATGTTCTCGGTGTATTTCTCAAGA 380
| ||||||||||| ||||| ||||||||||||||| | | |||||||| ||||||||||
Sbjct 173 TCGGCTCTGAGACACCTATCAAGTGTGAGCATAGTGACATACTCGGTGTTTTTCTCAAGA 232
Query 381 GAACGGCAGAACAACAGGTTTTGAGACGTAATTGGAGATTTTCATGGGTTCGAAATAGTA 440
|||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||
Sbjct 233 AAACGGCAGAACAACAGGTTTTGAGTCGTAATTGGAGGTTCTCGTGGGTTCGAAAGAGTA 292
Query 441 CATTGATGCAGCCGATGACTAAGGAAGTCCCCTGGTATCTGGACGACGGGACAGGTCGTG 500
||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 293 CATTGATGCAGCCGATGACTAAGGAAGTCCCGTGGTTTCTGGACGATGGGACAGGTCGTG 352
Query 501 TGAATGTAGATGTATCTCAAGGTGAATTAGGCTTGGCGTTGACGGTTGGTAGTGATGTAT 560
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 353 TGAATGTAGCGGTATCTCAAGGTGAAATAGGCTTGGCGTTGACGGTTGGAAGTGATGTAT 412
Query 561 TTGAAAAGGCAGAGCCGGTATCGCTTGTTCAAGGAGCGTTGGGTTATCTTAAAGGCTTTA 620
||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||| | |
Sbjct 413 TTGAAAAGGCAGAGCCGGTTTCGCTTGTTCAAGGAACCTTGGATTATCTTAAAGGCCTCA 472
Query 621 AGATACTTGGAGTAAGACACGTTGAGCGTGTTGTCCCAATTGGTACACCGCTTACAGTTG 680
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 473 AGATACTTGGAGTAAGACGCGTTGAGCATGTTGTCCCAATTGGTACACCGCTTACAATTG 532
Query 681 TTGGTGAGGCTGTTAGGGATGGCATGGGGAATGTCAGGATTCAAAAACCTGAGCAAGGAC 740
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTGGTGAGGCTGTTAAGGATGGCATGGGGAATGTCAGGATTCAAAAACCTGAGCAAGGAC 592
Query 741 CTTTCTACGTCACTTATATACCGCTAGATCAGCTCATCTCTAAATTGGGAGATTTGTCAA 800
|||||||||| ||||| ||||||| ||||| |||||||||||||||||||| | |||||
Sbjct 593 CTTTCTACGTGTCTTATGTACCGCTCGATCAACTCATCTCTAAATTGGGAGAATGGTCAA 652
Query 801 GGAGGTTCAAGTATGCCTCCATGGGTTTAACTGTTCTTGGTGTGATTCTTATTTCAAAGC 860
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 653 GGAGGTTCAAGTATGCCTCCATGGGCTTAACTGTTCTTGGTGTGATTCTTCTTTCAAAGC 712
Query 861 CTGTGATTGAATATATTCTAAAGAGAATTGAAGATACTCTAGAAAGAAGGCGGCGACAAT 920
|||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 713 CTGTGATTAAATATATTCTAAAGAAAATTGAAGATACTCTAGAGAGAAGGCGGCGACAAT 772
Query 921 TCGC-ACTGAAAAGAGTTGTTGATG 944
| | || |||||||||||||||||
Sbjct 773 T-GTTACAGAAAAGAGTTGTTGATG 796
Score = 211 bits (114), Expect = 1e-53
Identities = 152/171 (89%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 989 AGAGATGGTGATACACCTGATCTCTGTGTGGTTTGCCTTGACCAGAAGTATAACACCGCT 1048
|||| || |||| |||||||||||| ||| | |||| ||||||||||||||||||||||
Sbjct 784 AGAGTTGTTGATGTACCTGATCTCTGCGTGATCTGCCATGACCAGAAGTATAACACCGCT 843
Query 1049 TTTGTTGAGTGTGGTCATATGTGCTGCTGCACACCATGCTCCTTGCAACTAAGGACCTGT 1108
|||||| |||||||||||||||| |||||| | |||||||||||| | | | |||||||
Sbjct 844 TTTGTTCAGTGTGGTCATATGTGTTGCTGCTTAACATGCTCCTTGCGATTGACGACCTGT 903
Query 1109 CCTCTTTGCCGGGAACGAATACAACAAGTTTTGAAAATTTACCGCCATTGA 1159
||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 904 CCTCTTTGCCGGGAACGAATACAACTAGTTTTGAAGATTTACCGCCATTGA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5