BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59580.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907544 jgi|Araly1|907544|Al_scaffold_0002_625 1790 0.0
Ahg471135 jgi|Araly1|471135|fgenesh2_kg.1__1089__AT1G10210.1 1151 0.0
Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785 532 2e-150
> Ahg907544 jgi|Araly1|907544|Al_scaffold_0002_625
Length=1131
Score = 1790 bits (969), Expect = 0.0
Identities = 1080/1134 (95%), Gaps = 6/1134 (1%)
Strand=Plus/Plus
Query 177 ATGGCGACTCCTGTTGATCCACCTAATGGAATTAGGAATCAAGGGAAGCATTACTTCTCA 236
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGACTCCGGTTGATCCACCAAATGGAATAAGGAATCAAGGGAAGCATTACTTCTCA 60
Query 237 ATGTGGCAAACACTTTTCGAGATCGATACCAAATACGTGCCTATCAAACCGATAGGCCGA 296
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 61 ATGTGGCAAACACTTTTCGAGATTGATACGAAATACGTGCCTATTAAACCGATAGGCCGT 120
Query 297 GGCGCGTACGGTGTGGTTTGCTCTTCGGTTAACAGAGAGAGTAATGAGAGAGTGGCGATC 356
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCGCGTATGGTGTTGTTTGCTCTTCGGTTAACAGAGAGAGTAATGAGAGAGTGGCGATC 180
Query 357 AAGAAGATCCACAATGTGTTTGAGAATAGGATTGATGCGTTGAGGACTCTTAGGGAGCTC 416
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 181 AAGAAGATCCACAATGTGTTTGAGAATCGGATTGATGCGTTGAGGACTCTTAGGGAACTT 240
Query 417 AAGCTTCTACGTCATCTTCGACATGAGAATGTGGTTGCTCTTAAAGATGTAATGATGGCT 476
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGCTTTTACGTCATCTTCGACATGAGAATGTGGTTGCTCTTAAAGATGTAATGATGGCT 300
Query 477 AATCA-TAAGAGAAGCTTTAAGGATGTTTATCTTGTTTATGAGCTTATGGATACTGATCT 535
|| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 301 AA-CAATAAGAGAAGCTTTAAGGATGTGTATCTTGTTTCTGAGCTTATGGATACTGATCT 359
Query 536 TCATCAGATTATTAAGTCTTCTCAAGTTCTAAGTAATGACCATTGCCAATACTTCTTGTT 595
|||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 360 TCATCAGATTATCAAGTCGTCTCAAGTGCTAAGTAATGACCATTGTCAATACTTCTTGTT 419
Query 596 CCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGATCTGAA 655
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCAGTTGCTTCGTGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGATCTGAA 479
Query 656 ACCCGGTAACCTCCTTGTGAATGCAAACTGCGACTTAAAGATATGTGACTTTGGGCTAGC 715
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 480 ACCCGGTAACCTTCTTGTGAATGCAAACTGCGACTTAAAGATATGCGATTTTGGGCTAGC 539
Query 716 GAGGACGAGCAACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTAGATGGTACCG 775
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGGACAAGCAACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTAGATGGTACCG 599
Query 776 AGCACCAGAGCTACTCCTCTGTTGTGACAACTATGGAACCTCCATTGATGTCTGGTCAGT 835
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGCACCAGAGCTTCTCCTCTGTTGTGACAACTACGGAACCTCCATTGATGTCTGGTCAGT 659
Query 836 CGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACC-AGTATTCCCGGGAACAGAATGTC 894
|||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 660 CGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACCGA-TATTCCCTGGAACAGAATGTC 718
Query 895 TAAACCAGATTAAACTCATCATTAACATTTTGGGTAGCCAGAGAGAGGAAGATCTCGAGT 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TAAACCAGATTAAACTCATCATTAACATTTTGGGAAGCCAGAGAGAGGAAGATCTCGAGT 778
Query 955 TTATAGATAACCCAAAAGCCAAAAGATACATAGAATCACTCCCTTACTCACCAGGGA-TA 1013
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 779 TTATAGATAACCCGAAAGCCAAAAGATACATAGAATCACTCCCATACTCACC-GGGAATA 837
Query 1014 TCATTCTCTCGTCTTTACCCGGGTGCAAATGTTTTAGCCATTGATCTGCTTCAGAAAATG 1073
|||||||||||||||||||| ||| | ||| ||||||| ||||||||||||||||||
Sbjct 838 TCATTCTCTCGTCTTTACCCAAATGCGCACGTTCTAGCCATCGATCTGCTTCAGAAAATG 897
Query 1074 CTCGTTCTTGACCCTTCGAAAAGGATTAGTGTCACGGAAGCGCTTCAACATCCTTACATG 1133
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 898 CTCGTTCTTGACCCTTCGAAAAGGATTAGTGTCACGGAAGCGCTTCAGCATCCTTACATG 957
Query 1134 GCGCCTTTATATGACCCGAGTGCAAATCCTCCTGCTCAAGTTCCTATTGATCTCGATGTA 1193
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 958 GCGCCTTTATACGACCCGAATGCAAATCCACCTGCTCAAGTTCCTATTGATCTTGATGTA 1017
Query 1194 GATGAAGACGAGGATTTGGGAGCAGAGATGATAAGAGAATTAATGTGGAAGGAAATGATT 1253
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 GACGAAGACGAGGATTTGGGAGCAGAGATGATAAGAGAGTTAATGTGGAAGGAAATGATT 1077
Query 1254 CATTATCATCCAGAAGCTGCTACCATAAACAACAATGAGGTCTCTGAGTTTTGA 1307
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 1078 CATTATCATCCAGAAGCTGCTACCATGAACAACAATGAGCTCTCCGAGTTTTGA 1131
> Ahg471135 jgi|Araly1|471135|fgenesh2_kg.1__1089__AT1G10210.1
Length=1494
Score = 1151 bits (623), Expect = 0.0
Identities = 959/1120 (86%), Gaps = 28/1120 (3%)
Strand=Plus/Plus
Query 176 AATGGCGACTCCT-GTTGATCCACCTAATGGAATTAGGAATC-AAGGGAAGCATTACTTC 233
|||||||||| || |||||||| |||||||| |||| ||||| |||||||||||||||||
Sbjct 125 AATGGCGACT-CTGGTTGATCCTCCTAATGGGATTA-GAATCGAAGGGAAGCATTACTTC 182
Query 234 TCAATGTGGCAAACACTTTTCGAGATCGATACCAAATACGTGCCTATCAAACCGATAGGC 293
|||||||||||||| || ||||||||||| || |||||| |||| ||||| ||||| ||
Sbjct 183 TCAATGTGGCAAACTCTGTTCGAGATCGACACTAAATACATGCCAATCAAGCCGATTGGT 242
Query 294 CGAGGCGCGTACGGTGTGGTTTGCTCTTCGGTTAACAGAGAGAGTAATGAGAGAGTGGCG 353
|| || || |||||||| || ||||| || ||||||| || | || |||| ||| ||
Sbjct 243 CGTGGAGCTTACGGTGTAGTCTGCTCCTCTGTTAACACTGATACCAACGAGAAAGTAGCT 302
Query 354 ATCAAGAAGATCCACAATGTGTT-TGAGAATAGGATTGATGCGTTGAGGACTCTTAGGGA 412
||||||||||| |||||||| || |||||||||||| |||||||||||||||||| ||||
Sbjct 303 ATCAAGAAGATTCACAATGT-TTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGGGA 361
Query 413 GCTCAAGCTTCTACGTCATCTTCGACATGAGAATGTGGTTGCTCTT-AAAGATGTAATGA 471
||||||||||||||| |||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 362 GCTCAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCT-TTGAAAGATGTCATGA 420
Query 472 TGGCTAA-TCATAAGAGAAGCTTTAAGGATGTTTATCTTGTTTATGAGCTTATGGATACT 530
| || || ||||||||| ||||| || ||||| ||||||||||||||||| ||||| |||
Sbjct 421 T-GCCAATTCATAAGAGGAGCTTCAAAGATGTGTATCTTGTTTATGAGCTAATGGACACT 479
Query 531 GATCTTCATCAGATTATTAAGTCTTCTCAAGTTCTAAGTAATGACCATTGCCAATACTTC 590
||||| || |||||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 480 GATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTAAGTAACGATCACTGCCAATACTTC 539
Query 591 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGAT 650
||||||||||||||||||||||||||||||||||||||||| ||||| || || || |||
Sbjct 540 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAACATCCTGCACCGAGAT 599
Query 651 CTGAAACCCGGTAACCTCCTTGTGAATGCAAACTGCGACTT-AAAGATATGTGACTTTGG 709
|||||||||||||||| ||||| || |||||||| || || ||| ||||| || |||||
Sbjct 600 TTGAAACCCGGTAACCTTCTTGTCAACGCAAACTGTGATTTGAAA-ATATGCGATTTTGG 658
Query 710 GCTAGCGAG-GACGAGCAACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTAGAT 768
||| ||| | | ||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 659 GCTTGCGCGTG-CGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTT 717
Query 769 GGTACCGAGCACCAGAGCTACTCCTCTGTTGTGACAACTATGGAACCTCCATTGATGTCT 828
|||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 718 GGTACCGAGCTCCCGAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTT 777
Query 829 GGTCAGTCGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACC-AGTATTCCCGGGAACA 887
|||| || |||||||| || |||||||||||||| || ||||| | |||||| ||||||
Sbjct 778 GGTCTGTTGGTTGCATTTTTGCCGAGCTTCTTGGTAGGAAACCGA-TATTCCAAGGAACA 836
Query 888 GAATGTCTAAACCAGATTAAACTCATCATTAACATTTTGGGTAGCCAGAGAGAGGAAGAT 947
|||||||| |||||| |||||||||| | |||||| | || ||||| | ||| ||||||
Sbjct 837 GAATGTCTTAACCAGCTTAAACTCATTGTCAACATTCTCGGAAGCCAAAAAGAAGAAGAT 896
Query 948 CTCGAGTTTATAGATAACCCAAAAGCCAAAAGATACAT-AGAATCACTCCCTTACTCACC 1006
|| ||||| ||||||||||| ||||| ||||||||||| ||| ||||| || ||||||||
Sbjct 897 CTTGAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGA-TCACTTCCGTACTCACC 955
Query 1007 AGGGATATCATTCTCTC-GTCTTTACCCGGGTGCAAATGTTTTAGCCATTGATCTGCTTC 1065
||||| || || || | | ||||||||||| || |||| || ||||| || || ||||
Sbjct 956 GGGGATGTCTTTATC-CAGGCTTTACCCGGGCGCTCATGTGTTGGCCATCGACCTTCTTC 1014
Query 1066 AGAAAATGCTCGTTCTTGACCCTTCGAAAAGGATTAGTGTCACGGAAGCGCTTCAACATC 1125
|||||||||| ||| ||||||| || || |||||||||||||| ||||| || || ||||
Sbjct 1015 AGAAAATGCTTGTTTTTGACCCATCTAAGAGGATTAGTGTCACTGAAGCACTCCAGCATC 1074
Query 1126 CTTACATGGCGCCTTTATATGACCCGAGTGCAAATCCTCCTGCTCAAGTTCCTATTGATC 1185
| |||||||||||| |||||||||||| |||||| ||||| |||||||||||||| ||||
Sbjct 1075 CATACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCGGCTCAAGTTCCTATCGATC 1134
Query 1186 TCGATGTAGATGAAGACGAGGATTTGGGAGCAG-AGATGATAAGAGAATTAATGTGGAAG 1244
||||||||||||| | || |||| ||| || |||||||||||||| | ||||||||
Sbjct 1135 TCGATGTAGATGA-G--GA---TTTGAGAG-AGGAGATGATAAGAGAAATGATGTGGAAT 1187
Query 1245 GAAATGATTCATTATCATCCAGAAGCTGCTACCATAAACA 1284
|| ||| |||||||||||||| ||||| | ||| ||||||
Sbjct 1188 GAGATGCTTCATTATCATCCACAAGCTTCAACCTTAAACA 1227
> Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785
Length=1107
Score = 532 bits (288), Expect = 2e-150
Identities = 661/837 (79%), Gaps = 42/837 (5%)
Strand=Plus/Plus
Query 189 GTTGATCCACCTAATGGAATT-AGGAATCAAGGGAAGCATTACTTCTCAATGTGGCAAAC 247
||||| ||||| ||||| ||| | || |||||||| ||||||| |||||||||||||||
Sbjct 13 GTTGAGCCACCAAATGGGATTAAACAA-CAAGGGAAACATTACTACTCAATGTGGCAAAC 71
Query 248 ACTT-TTCGAGATCGATACCAAATACGTGCCTATCAAACCGATAGGCCGAGGCGCGTACG 306
| || ||||| |||||||| || || || || || ||||| || || |||| || || |
Sbjct 72 A-TTGTTCGAAATCGATACTAAGTATGTTCCGATTAAACCCATTGGAAGAGGAGCTTATG 130
Query 307 GTGTGGTTTGCTCTTCGGTTAA-CAGAGAGAGTAATGAGAGAGTGGCGATCAAGAAGATC 365
|||||||||| ||||| | || | | |||| |||||||||||| || || || |||||
Sbjct 131 GTGTGGTTTGTTCTTCAATCAATC-GTGAGACTAATGAGAGAGTTGCTATTAAAAAGATT 189
Query 366 CACAATGTGTTTGAGAATAG-GATTGATGCGTTGAGGACTCTT-AGGGAGCTCAAGCTTC 423
|||||||||||||||||| | | ||||||| ||||| || || ||||| || |||||||
Sbjct 190 CACAATGTGTTTGAGAATCGTG-TTGATGCTTTGAGAAC-GTTGAGGGAACTTAAGCTTC 247
Query 424 -TACGTCATCTTCGACATGAGAATGTGGTTGCTCTTAAAGATGTAATGATGGCTAATCAT 482
|| | ||| | | || ||||||||| | || ||||||||||| ||| || || | ||
Sbjct 248 TTA-GGCATGTGAGGCACGAGAATGTGATCGCGCTTAAAGATGTTATGTTGCCTGCTAAT 306
Query 483 AAGA-GAAGCTTTAAGGATGTTTATCTT-GTTTATGAGCTTATGGATACTGATCTTCATC 540
||| || ||||| ||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 307 -AGATCCAGTTTTAAAGATGTTTAT-TTGGTTTATGAGCTCATGGATACTGATCTTCATC 364
Query 541 AGATTATTAAGTCTTCTCAAGT-TCTAAGTAATGACCATTGCCAATACTTCTTGTTCCAG 599
|||||||||| || ||||| || ||| | |||| || ||| ||||||||||||| |||
Sbjct 365 AGATTATTAAATCCTCTCA-GTCTCTTTCTGATGATCACTGCAAATACTTCTTGTTTCAG 423
Query 600 TTGCTTCGAGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGATCTGAAACCC 659
|||||| |||| | |||||| ||||||| |||||||| || || |||||| |||| |||
Sbjct 424 TTGCTTAGAGGATTGAAGTATCTTCATTCTGCAAACATCCTTCACCGGGATTTGAAGCCC 483
Query 660 GGTAACCTCCTT-GTGAATGCAAACTGCGA-CTTAAAGATATGTGACTTTGGGCTAGCGA 717
|| |||||| || || || || || || || || || ||| ||||| |||||| | ||||
Sbjct 484 GGGAACCTC-TTAGTCAACGCGAATTGTGATCTCAA-GATTTGTGATTTTGGGTTGGCGA 541
Query 718 GGACGAGC-AACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTA-GATGGTACCG 775
| |||||| || | || | ||||||||||| || |||||||| || | | ||||||||
Sbjct 542 GAACGAGCCAAGGC-AATGAACAGTTCATGACGGAGTATGTTGTTAC-ACGTTGGTACCG 599
Query 776 AGCACCAGAGCTACTCCTCTGTTGTGACAACTATGGAACCTCCATTGATGTCTGGTCAGT 835
|||||| ||||| || || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 600 AGCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTTTGGTCAGT 659
Query 836 CGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACC-AGTATTCCCGGGAACAGAATGTC 894
|| ||||||||||| ||| ||||||| || ||||| | | ||||| ||||||||||| |
Sbjct 660 TGGATGCATATTCGCGGAGATTCTTGGCAGGAAACCGATT-TTCCCAGGAACAGAATGCC 718
Query 895 TAAACCAGATTAAACTCATCATTAACATT-TTGGGTAGCCAGAGAGAGGAA--G-ATCT- 949
| || ||| |||| || ||||| || || |||| |||||| | | || || | || |
Sbjct 719 TTAATCAGCTTAAGCTAATCATCAATGTTGTTGG-TAGCCA-ACA-AG-AATCGGATATT 774
Query 950 CGAGTTTATAGATAACCCAAAAGC-CAAAAGATACATAGAA-TCACTCCCTTACTCA 1004
|| ||| ||||| ||||| ||||| | || | | ||| || || || |||||||||
Sbjct 775 CG-GTTCATAGACAACCCGAAAGCTCGAAGGTTT-ATA-AAGTCTCTTCCTTACTCA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5