BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59590.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475354 jgi|Araly1|475354|fgenesh2_kg.2__484__AT1G59590.1 1541 0.0
> Ahg475354 jgi|Araly1|475354|fgenesh2_kg.2__484__AT1G59590.1
Length=1006
Score = 1541 bits (834), Expect = 0.0
Identities = 959/1017 (94%), Gaps = 18/1017 (2%)
Strand=Plus/Plus
Query 1 AAAACAAATCTTCATTAACC-AAAACC-aaaaaaaaaaaCTTGAAACTCTCTGAATCTCA 58
|||||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 AAAACAAATCCTCATTAACCAAAAACCAAAAAAAAAAAACTTGGAACTCTCTGAATCTCA 60
Query 59 CAAGAACAT-TGCAAG-GTAAAGAAACCACAAGATCATCACTCG-AAGTAAAAATGGTGA 115
||||||||| | |||| ||||||||||| ||||||||| || | |||||||||||||||
Sbjct 61 CAAGAACATCT-CAAGATTAAAGAAACCATAAGATCATCGCT-GAAAGTAAAAATGGTGA 118
Query 116 GCCCATTTAGATCTCCATGTTCTTCACCCAAAAAATCAAGAAAAGCAAGCAAGAACCCTT 175
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 119 GCCCATTTAGATCTCCATGTTCTTCACCAAAAAAATCAAGAAAAGCAAACAAGAACCCTT 178
Query 176 ATTCAAATCGTGGACTTGATAAATTCTCTGAGCTTCTCTCCGAGCTAGACGAGAAGAGGC 235
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 179 ATTCAAATCGTGGACTTGACAAATTCTCTGAGCTTCTCTCAGAGCTCGACGAGAAGAGAC 238
Query 236 AAAGCATCTACTCGAAGAAGCTCGATTCCGGTGGCCCGCCTCTTGTTCGATTTGTGTTCA 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 239 AAAGCATCTACTCGAAGAAGCTCGATTCCGGTGGTCCGCCTCTTGTTCGATTTGTATTCA 298
Query 296 CAAGCTCCGGTGAGTGTGTCCCCGTTGTGATCAGATCATCTTATCTTCACAAGAAGAACA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAAGCTCCGGTGAGTGTGTCCCCGTTGTGATCAGATCATCTTATCTTCACAAGAAGAACA 358
Query 356 AGAAGACGAAAGATGTTGTAGCTGATAAAGTCAAAACAGAAGTCAAGGAAGCAAAAACAG 415
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 359 AGAAGACGAAAGATGTTGTAGCTGATAAAGTCAAAACAGAAGTCAAAGAAGCGAAAACAG 418
Query 416 AGGAAATCAAGAACACAGAGCCTGAAACAGAGCAAAAACAGAGCTGTGTTATAAACGAGA 475
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 AGGAAATCAAGAACATAGAGCCTGAAACAGAGCAAAAACAGAGTTGTGTTATAAACGAGA 478
Query 476 ATCTGAAGAAGATCGCTAGACCGGATCATTTCTTGCCTGTGACTGTGATCTTGGTTCTTG 535
|| | |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 479 ATTTAAAGAAGATCGCTAGCCCGAATCATTTCTTGCCTGTGACTATGATCTTGGTTCTTA 538
Query 536 TGTTTTTGGCTTTCTTTGGAAGATCTGTAGCGATTATGTTTACTTGTATCGCTTGGTACT 595
| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 539 TCTTTTTGGTTTTCTTTGGAAGATCTGTTGCGATTATGTGTACTTGTATCGCTTGGTACT 598
Query 596 TGGTTCCAACGATTCAAGAACAGAGTGGAAACAGAGGATCATCACCGTCTTACGCGATGA 655
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 599 TGGTTCCAACGATTCAAGAACAGAGCGGAAACAGAGGATCATCACCGGCTTACGCGATGA 658
Query 656 AGAAGAAAGATTTCGCTAGGAAATTGAGTATTGAAAACAGAACATCGTTTAATCCAAGAA 715
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 AGAAGAAAGATTTCGCTAGGAAATTGAGTATTGAAAACAGAGCATCGTTTAATCCAAGAA 718
Query 716 CTGTTCGTGATCATTCTCCTCGCAAGTAGAAGAAGTTTCTTATTTTGGCTGCTCGTGaaa 775
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTGTTCGTGATAACTCTCCTCGCAAGTAGAAGAAGTTTCTTATTTTGGCTGCTCGTGAAG 778
Query 776 aaaaCCGCGTGACCGAGCGAAA-Acttttttt-ctttgtcaaaagttttttggtctctta 833
|||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| | | |
Sbjct 779 AAAACCGCGTGACCGAGC-AAACACTTTTTTTTCTTTGTCAAAAGTTTTTTGGT-T-T-A 834
Query 834 tttcttcgttactttttgttttattctctgtttcGTTCATAGTTGTTAAATTTAGAGACA 893
|||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 835 TTTCTTTGTTACTTTTTGTTT-ATTCTCTGTTTCGTTCATAGTTGTTGAATTTAGAGACA 893
Query 894 GCTGAATTAGCAGAAAATTGTGTAGCTTTTTTATATTGTTAGtttttttttAATGTTTAT 953
||||||||||||||||| ||||||||||||| ||||| |||| ||||| |||||||||
Sbjct 894 GCTGAATTAGCAGAAAAATGTGTAGCTTTTT-ATATTTTTAGGTTTTT---AATGTTTAT 949
Query 954 AGATGTATATAATGCAATTGGAGATGTTCTTGATTACATATGATCTATTGCAACCAT 1010
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 950 ACATGTATATAATGCAATTGGAGATGTTCTTGATAACATATGATCTATTGCAACCAT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5