BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59600.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925133 jgi|Araly1|925133|scaffold_200694.1 1554 0.0
> Ahg925133 jgi|Araly1|925133|scaffold_200694.1
Length=1016
Score = 1554 bits (841), Expect = 0.0
Identities = 946/997 (95%), Gaps = 5/997 (1%)
Strand=Plus/Plus
Query 33 TTTTGCATCGACGGC-GAAAAATGCGATCGTTAGAAGAGCTATCTCCGATAGAAACTCTA 91
|||||| |||||||| ||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 1 TTTTGCTTCGACGGCGGAAAAATGCGATCGTTAGAAGAGTTATCTCCGGTCGAAACCCTA 60
Query 92 GATATCGAAGAGAACGGTCTCGCTCTCGTCTCACGCGTCAAGCTCAATCTCACAATCCAC 151
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 61 GATATCGAAGAGAACGGTCTCTCTCTCGTCTCACGCGTCAAGCTCTGTCTCACAATCCAC 120
Query 152 CCAGTAGTCCCATCCGTATCCAAATCCATCGACGAATGGCAACTCAAGCGATCCTTAATA 211
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCAATAGTCCCCTCCGTATCCAAATCCATCGACGAATGGCAACTCAAACGATCCTTAATA 180
Query 212 GATTACCTCAAAAACTCTGTCGTAACC-TCCGTCACAGTTCCGGAGGAAGACATCGTAGT 270
||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 181 GATTACCTCAAAAACTCCGTCGT-ACCGTCCGTCACAGTTGCGGAGGAAGACATCGTAGT 239
Query 271 TCGTCGTCACAAGGACTTGAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTT 330
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCGCCGTCACAAGGATTTAAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTT 299
Query 331 GTTTATACGCGATTTAGGGTTTCTCGATGggaagaagaagaagaaggagaatgatggaga 390
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 300 GTTTATACGCGATTTAGGGTTTCTTGATGGGAAGAAGAGGAAGAAAGAGAATGATGGAGA 359
Query 391 gagagatgtgaaggaattggagaagaagtttttggattggagGAAGAGTTTGGTGGAGAA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAGATGTGAAGGAATTGGAGAAGAAGTTTTTGGATTGGAGGAAGAGTTTGGTGGAGAA 419
Query 451 GATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTGGTACTTCC 510
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTTGTACTTCC 479
Query 511 GATTTCAGATGATTTCGAGAAGTTGAAGAAGGATTGGGAGGAGTTTTACGCTTTTGGACA 570
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 480 GATTTCAGATGATTTCGAGAGGTTGAAGAAGGATTGGGAGGAGTTTTATGCTTTTGGACA 539
Query 571 TTCAAGGGAAGGAAGGAGAGAGGCTGATACGATTATACTTAGAGGTGTGCCATCAAGATG 630
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 540 TTCAAGGGAAGGAAGGAGAGAGGCTGATACGGTTATACTTAGAGGTGTTCCATCAAGATG 599
Query 631 GTTTGCTGAGCCACGAGTTTCATCGAAGCCTTCTATGTTGGTTACACATACAATCTTCTC 690
||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 600 GTTTGCTGAGCCAAGAGTTTCATCGAAGCCTTCAATGTTGGTTACGCATACAATCTTCTC 659
Query 691 TAGCTTTGGGAAAATTAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAGGACGC 750
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 TAGCTTTGGGAAAATAAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAAGACGC 719
Query 751 AGATGAGGATAGTGGAGACCTCATATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGA 810
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 AGATGAGGACAGTGGAGACCTCGTATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGA 779
Query 811 GAAGTACAATGA-TTTCGTGAATGCCATGAAGGCTTTTTGTGGTCGCTCAATGGAAAAGG 869
|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 GAAGTACAATGACTTT-GTGAATGCCATGAAGGCTTTCAGTGGTCGCTCAATGGAAAAGG 838
Query 870 AAGGCACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGATTCTTCAGAA 929
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 839 AAGGTACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGGTTCTTCCGGA 898
Query 930 ACTCGAGAAAGCCGTTGGATAACAGAGATGGCGGATACAGAAACGAGTCTTTTGGATGCA 989
||||||||| | | ||||||||||||||||| ||||||||||| ||| |||| |||| ||
Sbjct 899 ACTCGAGAAGGACATTGGATAACAGAGATGGAGGATACAGAAATGAGGCTTTCGGATACA 958
Query 990 ATCAGGATGATTTACGCCGAAAAAGATTCAGGGAGTA 1026
||||||||||||||||||| |||||||||||||||||
Sbjct 959 ATCAGGATGATTTACGCCGGAAAAGATTCAGGGAGTA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5