BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59600.1 Length=1259 Score E Sequences producing significant alignments: (Bits) Value Ahg925133 jgi|Araly1|925133|scaffold_200694.1 1554 0.0 > Ahg925133 jgi|Araly1|925133|scaffold_200694.1 Length=1016 Score = 1554 bits (841), Expect = 0.0 Identities = 946/997 (95%), Gaps = 5/997 (1%) Strand=Plus/Plus Query 33 TTTTGCATCGACGGC-GAAAAATGCGATCGTTAGAAGAGCTATCTCCGATAGAAACTCTA 91 |||||| |||||||| ||||||||||||||||||||||| |||||||| | ||||| ||| Sbjct 1 TTTTGCTTCGACGGCGGAAAAATGCGATCGTTAGAAGAGTTATCTCCGGTCGAAACCCTA 60 Query 92 GATATCGAAGAGAACGGTCTCGCTCTCGTCTCACGCGTCAAGCTCAATCTCACAATCCAC 151 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 61 GATATCGAAGAGAACGGTCTCTCTCTCGTCTCACGCGTCAAGCTCTGTCTCACAATCCAC 120 Query 152 CCAGTAGTCCCATCCGTATCCAAATCCATCGACGAATGGCAACTCAAGCGATCCTTAATA 211 ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 CCAATAGTCCCCTCCGTATCCAAATCCATCGACGAATGGCAACTCAAACGATCCTTAATA 180 Query 212 GATTACCTCAAAAACTCTGTCGTAACC-TCCGTCACAGTTCCGGAGGAAGACATCGTAGT 270 ||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||| Sbjct 181 GATTACCTCAAAAACTCCGTCGT-ACCGTCCGTCACAGTTGCGGAGGAAGACATCGTAGT 239 Query 271 TCGTCGTCACAAGGACTTGAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTT 330 ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCGCCGTCACAAGGATTTAAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTT 299 Query 331 GTTTATACGCGATTTAGGGTTTCTCGATGggaagaagaagaagaaggagaatgatggaga 390 |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| Sbjct 300 GTTTATACGCGATTTAGGGTTTCTTGATGGGAAGAAGAGGAAGAAAGAGAATGATGGAGA 359 Query 391 gagagatgtgaaggaattggagaagaagtttttggattggagGAAGAGTTTGGTGGAGAA 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GAGAGATGTGAAGGAATTGGAGAAGAAGTTTTTGGATTGGAGGAAGAGTTTGGTGGAGAA 419 Query 451 GATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTGGTACTTCC 510 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 GATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTTGTACTTCC 479 Query 511 GATTTCAGATGATTTCGAGAAGTTGAAGAAGGATTGGGAGGAGTTTTACGCTTTTGGACA 570 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 480 GATTTCAGATGATTTCGAGAGGTTGAAGAAGGATTGGGAGGAGTTTTATGCTTTTGGACA 539 Query 571 TTCAAGGGAAGGAAGGAGAGAGGCTGATACGATTATACTTAGAGGTGTGCCATCAAGATG 630 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 540 TTCAAGGGAAGGAAGGAGAGAGGCTGATACGGTTATACTTAGAGGTGTTCCATCAAGATG 599 Query 631 GTTTGCTGAGCCACGAGTTTCATCGAAGCCTTCTATGTTGGTTACACATACAATCTTCTC 690 ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 600 GTTTGCTGAGCCAAGAGTTTCATCGAAGCCTTCAATGTTGGTTACGCATACAATCTTCTC 659 Query 691 TAGCTTTGGGAAAATTAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAGGACGC 750 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 660 TAGCTTTGGGAAAATAAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAAGACGC 719 Query 751 AGATGAGGATAGTGGAGACCTCATATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGA 810 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 720 AGATGAGGACAGTGGAGACCTCGTATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGA 779 Query 811 GAAGTACAATGA-TTTCGTGAATGCCATGAAGGCTTTTTGTGGTCGCTCAATGGAAAAGG 869 |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 780 GAAGTACAATGACTTT-GTGAATGCCATGAAGGCTTTCAGTGGTCGCTCAATGGAAAAGG 838 Query 870 AAGGCACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGATTCTTCAGAA 929 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 839 AAGGTACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGGTTCTTCCGGA 898 Query 930 ACTCGAGAAAGCCGTTGGATAACAGAGATGGCGGATACAGAAACGAGTCTTTTGGATGCA 989 ||||||||| | | ||||||||||||||||| ||||||||||| ||| |||| |||| || Sbjct 899 ACTCGAGAAGGACATTGGATAACAGAGATGGAGGATACAGAAATGAGGCTTTCGGATACA 958 Query 990 ATCAGGATGATTTACGCCGAAAAAGATTCAGGGAGTA 1026 ||||||||||||||||||| ||||||||||||||||| Sbjct 959 ATCAGGATGATTTACGCCGGAAAAGATTCAGGGAGTA 995 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47043679578 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5