BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59610.1
Length=3261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475352 jgi|Araly1|475352|fgenesh2_kg.2__482__AT1G59610.1 5385 0.0
Ahg471140 jgi|Araly1|471140|fgenesh2_kg.1__1094__AT1G10290.1 3097 0.0
> Ahg475352 jgi|Araly1|475352|fgenesh2_kg.2__482__AT1G59610.1
Length=3209
Score = 5385 bits (2916), Expect = 0.0
Identities = 3128/3228 (97%), Gaps = 23/3228 (1%)
Strand=Plus/Plus
Query 1 GACGAAGACACACACAGACAAACAAATCCTAGCTTAGCACCGTCGCGACCGAATTCGAAA 60
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGAAGACACACACACAAAAACAAATCCTAGCTTAGCACCGTCGCGACCGAATTCGAAA 60
Query 61 TTCCGGTAACCCAATCGCCGGGAAA-ATCCACCGCTCGTGGCTACCGATATTGATTCTAA 119
||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||| |
Sbjct 61 TTCCGGTAACCCAATCGCC-GGAAATATCCACCGCTCGTGGTTACCGAGATTGATTCTCA 119
Query 120 TCGGATCTAGCGGCTCCCTTTCTTCGTCCAGATCTCGTACTTCATTC--GACCTCGATTC 177
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TCGGATCTAGCGGCTCCCTTTCTTCGTCCAGATCTCGTACTTCATTCGAGACCTCGATTC 179
Query 178 GCTGTGCAAGTTACGATGGAGGCGATCGATGAGTTGTCTCAGCTTTCGGATTCGATGAGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTGTGCAAGTTACGATGGAGGCGATCGATGAGTTGTCTCAGCTTTCGGATTCGATGAGA 239
Query 238 CAAGCGGCGTCTCTGCTCGCTGACGAAGATCCCGATGAGACCTCTTCTTCTAGACGGCCA 297
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAGCGGCGGCGCTACTCGCTGACGAAGATCCCGATGAGACCTCTTCTTCTAGACGGCCA 299
Query 298 GCTACTTCTCTCAACGTCGTTGCCCTAGGGAATGTGGGAGCTGGAAAGTCTGCAGTTCTA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTACTTCTCTCAACGTCGTTGCCCTAGGGAATGTGGGAGCTGGAAAGTCTGCAGTTCTG 359
Query 358 AATAGCCTAATTGGGCATCCAGTTCTGCCGACGGGTGAGAATGGTGCGACACGGGCTCCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATAGCCTAATTGGGCATCCAGTTCTGCCGACGGGTGAGAATGGTGCGACACGGGCTCCT 419
Query 418 ATTATCATTGATTTGAGTAGAGAAGAATCACTGAGCAGCAAGGCAATAATCTTGCAAATT 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 ATTATCATTGATTTGAGTAGAGAAGAATCACTGAGCAGCAAGGCAATCATCTTGCAAATT 479
Query 478 GACAATAAAAATCAACAAGTTTCTGCAAGTGCACTAAGGCATTCACTACAAGATAGGCTT 537
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 480 GACAATAAAAATCAACAAGTTTCTGCAAGTGCGCTAAGGCATTCTCTACAAGATAGGCTT 539
Query 538 AGCAAAGGAGCTTCAGGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACA 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCAAAGGAGCCTCAGGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACA 599
Query 598 GCTCCACCACTGAAATTGATTGATTTGCCTGGACTGGACCAGCGAATTGTGGACGATTCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTCCACCACTGAAATTGATTGATTTGCCTGGACTGGACCAGCGAATTGTGGACGATTCT 659
Query 658 ATGATTGGTGAACATGCACAGCACAACGATGCTATATTGCTGGTTGTTGTGCCTGCTAGC 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 ATGATTGGTGAACATGCACAGCACAACGATGCCATATTGCTGGTTGTTGTGCCTGCTAGC 719
Query 718 CAGGCATCTGAAATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGGCATCTGAAATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAG 779
Query 778 AGTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACCCAAAGTCC 837
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 AGTACCAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACCCAAAATCC 839
Query 838 CTTGCAGCAGTTCAGGCGCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGATATTCCA 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTGCAGCAGTTCAGGCTCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGATATTCCA 899
Query 898 TGGGTTGCACTTATTGGCCAATCTGTCTCAATTGCATCAGCGCAGTCTGGAGGCAGTGAG 957
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 TGGGTTGCACTTATTGGCCAATCTGTCTCAATTGCATCAGCGCAGTCTGGTGGCAGTGAG 959
Query 958 AACTCTTTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGCCTTAAATCCATTTTGACTGGT 1017
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 960 AACTCTTTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTCTGAAATCCATTTTGACTGGT 1019
Query 1018 GCTCCACAAAGCAAACTTGGCAGAATTGCCCTGGTCGACACTCTTGCTAGCCAGATCCGT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 GCTCCACAAAGCAAACTTGGCAGAATTGCCCTGGTCGACACTCTTGCTAGCCAGATTCGT 1079
Query 1078 AGCAGAATGAAGCTCAGGCTTCCGAACATCTTAACTGGACTCCAGGGTAAGTCTCAAATA 1137
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCAGAATGAAGCTCAGGCTTCCAAACATCTTAACTGGACTCCAGGGTAAGTCTCAAATA 1139
Query 1138 GTGCAGGACGAATTAGCGAGGCTTGGTGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTGCAGGACGAATTAGCGAGGCTTGGTGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGG 1199
Query 1198 GCAATAGCTTTGGAGCTTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGT 1257
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 GCAATAGCTTTGGAGCTTTGTCGTGAGTTTGAGGACAAATTTCTTCTCCATTTAGCTGGT 1259
Query 1258 GGTGAAGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAATCGTATC 1317
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1260 GGTGAAGGAAGTGGTTGGAAGGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACCGTATC 1319
Query 1318 AAAAAGCTTCCGTTGGATAGACATTTTGACTTGAACAATGTCAAAAGGATCGTGTTGGAG 1377
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAACAGCTTCCATTGGATAGACATTTTGACTTGAACAATGTCAAAAGGATCGTGTTGGAG 1379
Query 1378 GCTGATGGTTATCAACCTTATCTCATATCTCCAGAGAAAGGGTTGAGATCGTTAATAAAA 1437
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCAGATGGTTATCAACCTTATCTTATATCTCCAGAGAAAGGGTTGAGATCGTTAATAAAA 1439
Query 1438 ACCGTTCTTGAGTTGGCTAAAGACCCAGCACGACTATGTGTTGATGAGGTTCACCGAGTG 1497
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1440 ACCGTTCTTGAGTTGGCTAAAGACCCAGCACGGCTATGTGTTGATGAGGTTCACCGAGTG 1499
Query 1498 CTTGTTGACATAGTTTCAGCTTCCGCGAATGCCACACCTGGTCTTGGGAGATATCCTCCT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTTGTTGACATAGTTTCAGCTTCCGCGAATGCCACACCTGGTCTTGGGAGATATCCTCCT 1559
Query 1558 TTTAAGAGAGAGGTTGTAGCTATAGCAAGTGCCGCACTTGATGGATTCAAGAATGAAGCT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTTAAGAGAGAGGTTGTAGCTATAGCAAGTGCCGCACTTGATGGATTCAAGAATGAAGCT 1619
Query 1618 AAGAAGATGGTAGTTGCATTAGTTGATATGGAGCGTGCATTTGTACCACCTCAGCACTTC 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1620 AAGAAGATGGTAGTTGCATTAGTTGATATGGAGCGTGCATTTGTACCACCTCAACACTTC 1679
Query 1678 ATCCGCCTCGTACAAAGAAGAATGGAAAGGCAGCGTCGTGAGGAGGAGCTAAAAGGTCGT 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATCCGCCTCGTACAAAGAAGAATGGAAAGGCAGCGTCGTGAGGAGGAGCTAAAAGGTCGT 1739
Query 1738 TCCTCTAAAAAGGGACAAGATGCAGAGCAGTCTCTCTTAAACAGGGCTACTAGTCCTCAG 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1740 TCCTCTAAAAAGGGACAAGATGCAGAGCAGTCTCTCTTAAACAGGGCAACTAGTCCTCAG 1799
Query 1798 CCAGATGGGCCATCATCAACTGGTGGTAGCTTAAAATCTTTGAGAGACAAATTAATGCCA 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CCAGATGGGCCATCATCAACTGGTGGTAGCTTAAAATCTTTGAGAGACAAATTAATGCCG 1859
Query 1858 CAAGATAAAGATAAAGATAAAGAAAAAGAGACTCCGGAGGTGTCTGGTCTGAAGACTGCT 1917
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1860 CAAGATAAAGACAAAGATAAAGATAAAGAGACTCCGGAGGTGTCTGGTCTGAAGACTGCT 1919
Query 1918 GGACCTGAGGGAGAGATAACTGCAGGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGG 1977
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1920 GGACCTGAGGGAGAGATAACAGCAGGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGG 1979
Query 1978 TGGAGTAGGCGATGGTTTGTTCTGAATGAAAAAACTGGAAAGCTTGGTTATACaaaaaaa 2037
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1980 TGGAGTAGGCGATGGTTTGTTCTGAATGAAAAAACAGGAAAGCTTGGCTATACAAAAAAA 2039
Query 2038 CAAGAAGAAAGAAACTTCCGCGGCACTGTAACTTTGGAGGAATGCAGTATCGAAGAAATT 2097
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 CAAGAAGAGAGAAACTTCCGCGGCACTGTAACTTTGGAGGAATGCAGTATCGAAGAAATT 2099
Query 2098 TCTGATGATGAAGGAGAAAAATCAAAGAGCTCGAAAGATAAGAAATCAAATGGACCGGAT 2157
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2100 TCTGATGATGAAGGAGAAAAATCAAAGAGCTCTAAAGATAAGAAATCAAATGGACCTGAT 2159
Query 2158 TCAAAAGGACCAGGCCTTGTATTTAAGATAACTTGCAGGGTTCCATATAAGACTGTACTT 2217
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2160 TCAAAAGGACCAGGCCTTGTATTTAAGATAACTTGCAGGGTTCCTTATAAGACTGTACTT 2219
Query 2218 AAAGCTCACAATGCGTTGGTTCTCAAGGCCGAGAGCATGGTTGATAAGAATGAATGGATA 2277
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 AAAGCTCATAATGCGTTGGTTCTCAAGGCCGAGAGCATGGTTGATAAGAATGAATGGATT 2279
Query 2278 AATAAGCTGCAAAAGGTTATCCAGGCCCGAGGAGGCCAAGTGGGTAGCGCTTCCATGAGA 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 AATAAGCTGCAAAAGGTTATCCAGGCCCGAGGAGGCCAAGTGGGTAGCGCTTCCATGAGA 2339
Query 2338 CAAAGTCTTTCAGAAGGCTCACTTGATAAGATGGTAAGGAAACCGGTCGACCCGGAAGAG 2397
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2340 CAAAGTCTTTCAGAAGGTTCACTTGATAAGATGGTAAGGAAACCGGTCGACCCAGAAGAG 2399
Query 2398 GAATTACGGTGGATGTCCCAAGAAGTACGGGGTTATGTTGAAGCTGTTCTCAACAGTCTA 2457
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2400 GAATTGCGGTGGATGTCCCAAGAAGTACGGGGTTACGTTGAAGCTGTTCTCAACAGTCTA 2459
Query 2458 GCTGCCAATGTTCCAAAGGCTGTTGTTCTCTGTCAAGTGGAGAAATCCAAGGAAGACATG 2517
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2460 GCTGCCAATGTTCCAAAGGCTGTTGTTCTTTGTCAAGTGGAGAAATCAAAGGAAGACATG 2519
Query 2518 CTGAATCAGCTATACAGCTCTATCAGCGCAATTGGTAATGAGAGGATTGAATCATTGATT 2577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 CTGAATCAGCTATACAGCTCTATCAGCGCAATTGGTAATGAGAGGATTGAATCATTGATT 2579
Query 2578 CAAGAGGATCAGAACGTCAAAAGACGAAGAGACCGTTACCAGAAACAGTCCTCTCTTCTC 2637
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2580 CAAGAGGATCAGAATGTCAAAAGACGAAGAGACCGTTACCAGAAACAGTCCTCTCTTCTC 2639
Query 2638 TCAAAGCTCACTAGGCAGCTTAGCATTCACGATAACCGAGCAGCTGCTGCTTCAAGCTGG 2697
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2640 ACAAAGCTCACAAGGCAGCTTAGCATTCACGATAACAGAGCAGCTGCTGCTTCAAGCTGG 2699
Query 2698 TCTGACAATAGTGGCACTGAAAGCAGCCCGAGAACCAATGGAGGGTCATCAGGAGAGGAC 2757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2700 TCTGACAATAGTGGCACTGAAAGCAGCCCGAGAACCAATGGAGGGTCATCAGGAGAGGAC 2759
Query 2758 TGGATGAATGCGTTTAACGCAGCTGCTAGTGGACCTGACTCATTGAAGAGATATGGATCT 2817
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2760 TGGATGAATGCGTTTAACGCAGCTGCTAGTGGACCTGACTCATTGAAGAGATACGGATCT 2819
Query 2818 GGCGGCCATAGCCGTCGTTACAGTGATCCAGCACAGAATGGTGAGGATTCTTCTGGATCT 2877
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2820 GGCGGCCATAGCCGCCGTTACAGTGATCCAGCGCAGAACGGTGAGGATTCTTCTGGATCT 2879
Query 2878 GGTGGCAGCTCCCGTCGCACCACACCAAACCGGCTCCCACCAGCTCCGCCACAGTCTGGA 2937
|| |||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 2880 GGCGGCAGCTCCCGTCGGACCACCCCAAACCGACTCCCACCAGCACCGCCACAGTCTGGA 2939
Query 2938 TCATCTTACAGGTATTAGAAACCTGTTTGGTTTCCAGGATTGTTATTGAACGAACCATAA 2997
||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||| |||||
Sbjct 2940 TCATCTTACAGGTATTAGAAATCTGGTTGATTTCCAGGATTGTTATTGAAAGAAGCATAA 2999
Query 2998 AACACATTCTTTTCTTTCTTTTTCTGCCCTTTCGGATTGGTCCCTGTTTCTGGGACTATT 3057
|| ||| | |||||| |||| ||||||||||||||||||| |||| ||||||||||
Sbjct 3000 AA-ACA--CAATTCTTT-TTTT---GCCCTTTCGGATTGGTCCCCGTTTTTGGGACTATT 3052
Query 3058 TTTCTTATGTC-TCACTAGTTTaaaaaaaaaaaaaCCAGAATGATAATATGATGATGATG 3116
|||||||| || || |||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 3053 TTTCTTATTTCCTCGCTAGTT-AAAAAAAAAAA--C-AGAATGATAATATGATGATGATG 3108
Query 3117 TACTTGCGTGTGTTTGTAGATAGATATTTGTTAGAGAGACACATATATATGAGTTTGGTC 3176
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 3109 TACTTGCGTGTGTTTGTAGATAGATATTTGTTAGTGA--CACATAT----GAGTTTGGTC 3162
Query 3177 TTCATATTGGTCATATGCTTTATATTAAAGAAAATGTTACTTTTCTTT 3224
||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 3163 TTCATTTTG-TCATATGCTTTTTATTAAAGAAAATGTTACTTTTCTTT 3209
> Ahg471140 jgi|Araly1|471140|fgenesh2_kg.1__1094__AT1G10290.1
Length=3225
Score = 3097 bits (1677), Expect = 0.0
Identities = 2426/2786 (87%), Gaps = 58/2786 (2%)
Strand=Plus/Plus
Query 191 CGATGGAGGCGATCGATGAGTTGTCTCAGCTTTCGGATTCGATGAGACAAGCGGCGTCTC 250
||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
Sbjct 160 CGATGGAGGCGATCGATGAGTTGTCTCAGCTCTCAGATTCGATGAAACAGGCGGCGTCGC 219
Query 251 TGCTCGCTGACGAAGATCCCGATGAGACCTCTTCTT-CTAGACGGCCAGCTAC-TTCTCT 308
| ||||| |||||||||||||| ||||||||||||| | || || || ||||| ||| ||
Sbjct 220 TTCTCGCCGACGAAGATCCCGACGAGACCTCTTCTTCCAAG-CGCCCTGCTACTTTC-CT 277
Query 309 CAACGTCGTTGCCCTAGGGAATGTGGGAGCTGGAAAGTCTGCAGTTCTAAATAGCCTAAT 368
||||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 278 CAACGTCGTTGCCTTAGGAAATGTGGGAGCTGGAAAGTCTGCAGTTCTAAACAGTCTAAT 337
Query 369 TGGGCATCCAGTTCTGCCGACGGGTGAGAATGGTGCGACACGGGCTCCTATTATCATTGA 428
|||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct 338 TGGGCATCCAGTGCTGCCGACGGGTGAGAATGGTGCTACACGAGCTCCTATAATAATTGA 397
Query 429 TTTGAGTAGAGAAGA-ATCACTGAGCAGCAAGGCAATAATCTTGCAAATTGACAATAAAA 487
||||| || | ||| || ||||||||||||| || |||||||||||||||||||||
Sbjct 398 ATTGAGCAG-GGAGAGTTCTTTGAGCAGCAAGGCGATTATCTTGCAAATTGACAATAAAT 456
Query 488 ATCAACAAGTTTCTGCAAGTGCACTAAGGCATTCACTACAAGATAGGCTTAGCAAAGGAG 547
||| ||||||||||||||||| || || ||||| ||||||||||| |||||||||||||
Sbjct 457 CTCAGCAAGTTTCTGCAAGTGCTCTGAGACATTCTCTACAAGATAGACTTAGCAAAGGAG 516
Query 548 CTTCA-GGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACAGCTCCACCA 606
| ||| |||| | |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 517 CCTCAGGGAA-GAACCGTGATGAAATAAACTTAAAACTTCGTACCAGCACAGCTCCACCA 575
Query 607 CTGAAATTGA-TTGATTTGCCTGGACTGGACCAGCGAATTGTGGACGATTCTATGATTGG 665
||||||| | ||||| ||||||||||||||||| | ||||||||||| || |||||||
Sbjct 576 TTGAAATT-AGTTGATCTGCCTGGACTGGACCAGAGGATTGTGGACGAGTCAATGATTGC 634
Query 666 TGAACATGCACAGCACAACGATGCTATATTGCTGGTTGTTGTGCCTGCTAGCCAGGCATC 725
|||| | || || ||||| ||||| ||| |||||||| | ||||||||||||||||||||
Sbjct 635 TGAATACGCGCAACACAATGATGCCATACTGCTGGTTATAGTGCCTGCTAGCCAGGCATC 694
Query 726 TGAAATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAGAGTACTAG 785
||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 695 TGAAATTTCATCATCCCGAGCCCTTAAGATTGCAAAGGAGTATGATCCAGAGAGTACTAG 754
Query 786 GACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAAC-CCAAAGTCCCTTGCAG 844
|||| |||| ||||| | |||||||| ||||||||||||||| | |||| |||||||||
Sbjct 755 GACAATAGGCATTATTGGAAAAATTGACCAGGCAGCAGAGAACTCGAAAG-CCCTTGCAG 813
Query 845 CAGTTCAGGCGCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGATATTCCATGGGTTG 904
| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 814 CTGTTCAGGCTCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGACATTCCATGGGTTG 873
Query 905 C-ACTTATTGGCCAATCTGTCTCAATTGCATCAGCGCAGTCTGGAGGCAGTGAGAACTCT 963
| | |||||||||| || || |||||||| ||||| ||||||||| | ||||||||||
Sbjct 874 CTA-TTATTGGCCAGTCCGTTTCAATTGCGTCAGCACAGTCTGGAAGTGGTGAGAACTCC 932
Query 964 TTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGCCTTAAATCCATTTTGACTGGTGCTCCA 1023
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 933 TTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTCTTAAGTCCATTTTGACTGGGGCTCCA 992
Query 1024 CAAAGCAAACTTGGCAGAATTGCCCTGGTCGACACTCTTGCTAGCCAGATCCGTAGCAGA 1083
|||| ||| ||||||||||| || |||| ||||| |||||||||||||| |||||||||
Sbjct 993 CAAACCAAGCTTGGCAGAATCGCGTTGGTGGACACCCTTGCTAGCCAGATTCGTAGCAGA 1052
Query 1084 ATGAAGCTCAGGCTTCCGAA-CATCTTAACTGGACTCCAGGGTAAGTCTCAAATAGTGCA 1142
||||||||||||||||| || |||| |||| ||||||||||||||||||||||||||
Sbjct 1053 ATGAAGCTCAGGCTTCC-AAGTGTCTTGTCTGGGCTCCAGGGTAAGTCTCAAATAGTGCA 1111
Query 1143 GGACGAATTAGCGAGGCTTGGTGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGGGCAAT 1202
||| || |||||||||||||||| ||||| |||| |||||||||||| |||||||| ||
Sbjct 1112 GGATGAGCTAGCGAGGCTTGGTGAACAATTAGTTAACAGTGCTGAAGGTACAAGGGCTAT 1171
Query 1203 AGCTTTGGAGCTTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGA 1262
||||||||||||||| ||||||||||||||||| |||||||| || || |||||||||||
Sbjct 1172 AGCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGTTTCTTCTGCACTTGGCTGGTGGTGA 1231
Query 1263 AGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAATCGTATCAAAAA 1322
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1232 AGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGAAATTTCCCCAACCGTATCAAGCA 1291
Query 1323 GCTTCCGTTGGATAGACATTTTGACTTGAACAATGTCAAAAGGATCGTGTTGGAGGCTGA 1382
|||||| ||||||||||||||||||||||||||||| |||||| | || |||||||| ||
Sbjct 1292 GCTTCCATTGGATAGACATTTTGACTTGAACAATGTTAAAAGGGTTGTTTTGGAGGCAGA 1351
Query 1383 TGGTTATCAACCTTATCTCATATCTCCAGAGAAAGGGTTGAGATCGTTAATAAAAACCGT 1442
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1352 TGGTTATCAACCTTATCTTATATCTCCAGAGAAAGGGTTGAGATCGTTGATAAAGATTGT 1411
Query 1443 TCTTGAGTTGGCTAAAGACCCAGCACGACTATGTGTTGATGAGGTTCACCGAGTGCTTGT 1502
|||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct 1412 CCTTGAGTTGGCTAAAGACCCGGCACGTCTTTGTGTTGATGAGGTTCACCGAGTTCTTGT 1471
Query 1503 TGACATAGTTTCAGCTTCCGCGAATGCCACACCTGGTCTTGGGAGATATCCTCCTTTTAA 1562
|||||||||||| || || || ||||| |||||||| |||||||||||||||||||| ||
Sbjct 1472 TGACATAGTTTCGGCCTCTGCAAATGCTACACCTGGACTTGGGAGATATCCTCCTTTCAA 1531
Query 1563 GAGAGAGGTTGTAGCTATAGCAAGTGCCGCACTTGATGGATTCAAGAATGAAGCTAAGAA 1622
| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1532 GCGAGAGGTTGTAGCTATAGCAAGTGCAGCACTTGATGGTTTCAAGAATGAAGCCAAGAA 1591
Query 1623 GATGGTAGTTGCATTAGTTGATATGGAGCGTGCATTTGTACCACCTCAGCACTTCATCCG 1682
||||| |||||| ||||||||||||| || || |||||||||||||| || || |||||
Sbjct 1592 AATGGTGGTTGCACTAGTTGATATGGAACGCGCTTTTGTACCACCTCAACATTTTATCCG 1651
Query 1683 CCTCGTACAAAGAAGAATGGAAAGGCAGCGTCGTGAGGAGGAGCTAAAAGGTCGTTCCTC 1742
|| || ||||| ||||||||||| || ||||| ||||| ||||| ||||| || || ||
Sbjct 1652 TCTTGTGCAAAGGAGAATGGAAAGACAACGTCGCGAGGAAGAGCTGAAAGGGCGATCTTC 1711
Query 1743 TAAAAAGGGACAAGATGCAGAGCAGTCTCTCTTAAACAGGGCTACTAGTCCTCAGCCAGA 1802
||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 1712 TAAGAAGGGACAAGATGCAGAGCAGTCCCTTTTAAGCAGGGCTACTAGTCCTCAGCCAGA 1771
Query 1803 TGGGCCATCATCAACTGGTGGTAGCTTAAAATCTTTGAGAGACAAATTAATGCCACAAGA 1862
||||||| | || ||||||||||||||||||| ||| ||||||| || | |
Sbjct 1772 TGGGCCA--A-CAGCTGGTGGTAGCTTAAAATCAATGAAAGACAAA------CCT-A-G- 1819
Query 1863 TAAAGATAAAGATAAAGAAAAAGAGACTCCGGAGGTGTCTGGTCTGAAGACTGCTGGACC 1922
| | || |||||||| || | |||||||| ||||||||||| |||||||||||
Sbjct 1820 TCC-GC-AA-GATAAAGA----GA--CGCCGGAGGTCTCTGGTCTGAAAACTGCTGGACC 1870
Query 1923 TGAGGGAGAGATAACTGCAGGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAG 1982
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1871 TGAGGGGGAGATAACAGCAGGGTACTTAATGAAGAAAAGTGCAAAAACAAATGGGTGGAG 1930
Query 1983 TAGGCGATGGTTTGTTCTGAATGAAAAAACTGGAAAGCTTGGTTATACaaaaaaaCAAGA 2042
|||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 1931 TAGGCGATGGTTTGTTCTGAATGAGAAAACTGGAAAGCTCGGCTATACCAAAAAGCAAGA 1990
Query 2043 AGAAAGAAACTTCCGCGGCACTGTAACTTTGGAGGAATGCAGTATCGAAGAAATTTCTGA 2102
||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||| | ||
Sbjct 1991 AGAAAGAAACTTCCGGGGCACTATAACTTTGGAGGAATGCACTATTGAAGAAATTCCCGA 2050
Query 2103 TGATGAAGGAGAAAAATCAAAGAGCTCGAAAGATAAGAAATCAAATGGACCGGATTCAAA 2162
|| |||| |||||| |||||||||||||| || ||||| |||||||||| ||||||||
Sbjct 2051 GGACGAAGTAGAAAAGTCAAAGAGCTCGAAGGACAAGAAGGCAAATGGACCTGATTCAAA 2110
Query 2163 AGGACCAGGCCTTGTATTTAAGATAACTTGCAGGGTTCCATATAAGACTGTACTTAAAGC 2222
||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| |||||
Sbjct 2111 AGGACCAGGCCTTGTATTTAAAATAACCTGCAAGGTTCCCTATAAGACTGTACTAAAAGC 2170
Query 2223 TCACAATGCG-TTGGTTCTCAAGGCCGAGAGCATGGTTGATAAGAATGAATGGATAAATA 2281
||||||||| ||| | || ||||| ||||| | || |||||||| || ||||| ||||
Sbjct 2171 TCACAATGCCCTTG-TGCTTAAGGCTGAGAGTGTAGTCGATAAGAACGAGTGGATTAATA 2229
Query 2282 AGCTGCAAAAGGTTATCCAGGCCCGAGGAGGCCAAGTGGGTAGCGCTTCCATGAGACAAA 2341
|| ||||||||||||||||||| || |||||||||||||| || | |||||||||||| |
Sbjct 2230 AGTTGCAAAAGGTTATCCAGGCTCGTGGAGGCCAAGTGGGCAGTGTTTCCATGAGACAGA 2289
Query 2342 GTCTTTCAGAAGGCTCACTTGATAAGATGGTAAGGAAACCGGTCGACCCGGAAGAGGAAT 2401
||||||||||||| ||||||||||||||||| |||||||| |||| || ||||||||
Sbjct 2290 GTCTTTCAGAAGGTTCACTTGATAAGATGGTTAGGAAACCCATCGATCCAGAAGAGGAGC 2349
Query 2402 TACGGTGGATGTCCCAAGAAGTACGGGGTTATGTTGAAGCTGTTCTCAACAGTCTAGCTG 2461
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 2350 TCCGGTGGATGTCCCAAGAAGTACGGGGTTATGTTGAAGCTGTTCTTAACAGTCTTGCAG 2409
Query 2462 CCAATGTTCCAAAGGCTGTTGTTCTCTGTCAAGTGGAGAAATCCAAGGAAGACATGCTGA 2521
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 2410 CCAATGTTCCAAAGGCTGTTGTTCTTTGTCAAGTGGAGAAAGCAAAGGAAGACATGCTGA 2469
Query 2522 ATCAGCTATACAGCTCTATCAGCGCAATTGGTAATGAGAGGATTGAATCATTGATTCAAG 2581
|||| |||||||| ||||| || ||||| || ||||| |||||||| |||||||||||||
Sbjct 2470 ATCAACTATACAGTTCTATAAGTGCAATAGGCAATGAAAGGATTGAGTCATTGATTCAAG 2529
Query 2582 AGGATCAGAACGTCAAAAGACGAAGAGACCGTTACCAGAAACAGTCCTCTCTTCTCTC-A 2640
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct 2530 AGGATCAGAATGTCAAAAGACGAAGAGAGCGTTACCAGAAACAATCCTCTCTTCTTTCGA 2589
Query 2641 AAGCTCACTAGGCAGCTTAGCATTCACGATAACCGAGCAGCTGCTGCTTCAAGCTGGTCT 2700
|| ||||| |||||||||||||||||||| || |||||||||||||||||||| | ||
Sbjct 2590 AA-CTCACGAGGCAGCTTAGCATTCACGACAATCGAGCAGCTGCTGCTTCAAGTTATTCG 2648
Query 2701 GACAATAGTGGCACTGAAAGCAGCCCGAGAACCAA-TGGAGGGTCATCAGGAGAGGACTG 2759
|||||||||||||||||||| ||||| ||||| || |||||| || ||||| || |||||
Sbjct 2649 GACAATAGTGGCACTGAAAGTAGCCCAAGAAC-AAGTGGAGGTTCTTCAGGGGACGACTG 2707
Query 2760 GATGAATGCGTTTAACGCAGCTGCTAGTGGACC-T--GACTCATTG--AAGAGATATGGA 2814
||||||||| || ||| | ||||||| ||||| | ||||||||| ||| | || ||
Sbjct 2708 GATGAATGCCTTCAACTCCGCTGCTAACGGACCCTCAGACTCATTGTCAAG-G-TACGGT 2765
Query 2815 TCTGGCGGCCATAGCCGTCGTTACAGTGATCCAGCACAGAATGGTGA-G--G-ATTCTTC 2870
|| || || || ||||| || |||||||| || || ||||| || || | | || | |
Sbjct 2766 TCCGGTGGTCACAGCCGCCGCTACAGTGACCCCGCTCAGAACGGAGATGCAGCAT-CACC 2824
Query 2871 TGGATCTGGTGGCAGCTCCCGTCGCACCACACCAAACCGGCTCCCACCAGCTCCGCCACA 2930
|| |||||| ||| | | | |||||||| || || ||| | |||||||| || || |
Sbjct 2825 AGGCTCTGGTAGCAAC-CGC--CGCACCACCCCCAATCGGTTGCCACCAGCACCACCGCC 2881
Query 2931 GTCTGGATCATCTTACAGGTATTAGA 2956
| | || ||| |||||||||||||||
Sbjct 2882 GACAGGTTCAGCTTACAGGTATTAGA 2907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123078191082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5