BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59620.1
Length=2808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475351 jgi|Araly1|475351|fgenesh2_kg.2__481__AT1G59620.1 3478 0.0
Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577 712 0.0
Ahg494924 jgi|Araly1|494924|fgenesh2_kg.8__740__AT5G43470.1 97.1 6e-19
Ahg923884 jgi|Araly1|923884|scaffold_105165.1 76.8 8e-13
> Ahg475351 jgi|Araly1|475351|fgenesh2_kg.2__481__AT1G59620.1
Length=2655
Score = 3478 bits (1883), Expect = 0.0
Identities = 2429/2686 (90%), Gaps = 63/2686 (2%)
Strand=Plus/Plus
Query 122 ATGGCTGAGACACTTTTGTCATTTGGAGTCGAAAAGCTTTGGGACCTCCTTGTCCGAGAA 181
|||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCTGAGACAATTTTGTCGGTTGGAGTCGAAAAGCTTTGGAACCTCCTTGTCCGAGAA 60
Query 182 TCTGATCGATTTCAAGGAGTTAAAAAGCAATTTAATGAATTGAGAAGTGATTTAAATAAG 241
||||| |||||||||||||||||| |||||||||||| ||| | ||||||| | |||| |
Sbjct 61 TCTGAGCGATTTCAAGGAGTTAAAGAGCAATTTAATGTATTAAAAAGTGATCTGAATATG 120
Query 242 TTAAGGTGCTTTTTAGAAGATGCAGATGCCAAGAAACATCAAAGTGCAATGGTGAGTAAC 301
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TTAAGGTGCTTTTTGGAAGATGCAGATGCCAAGAAACATAAAAGTGCAATGGTGAGTAAC 180
Query 302 ACTGTGAAAGAGGTCAAGGAAATTGTTTATGACACAGAAGATATCATTGAAACCTTTCTT 361
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 ACTGTGAAAGAAGTCAAGGAAATAGTTTATGACACAGAAGATATAATTGAAACCTTTCTT 240
Query 362 CGaaaaaaaCAACTCGGAAGAACAAGAGGCATGAAGAAACGTATCAAAGAATTTGCTTGC 421
|||||| || |||| ||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 241 CGAAAAGAAGAACTTGGAAGAACAAGTGGCATCAAGAAACGTATCAAACAATTTGCTTGC 300
Query 422 GTTCTTCCTGATCGCCGGAAAATTGCTATCGATATGGAAGGCCTAAGTAAGAGGAT-TGC 480
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 301 GTTATTCCTGATCGCCGGAAAATTGCTATCGATATGGAAGGCCTAAGTAACAGGATCT-C 359
Query 481 TAAGGTGATCTGCGATATGCAGAGTCTTGGCGTACAACAGGAAAATGTTAAGAAATTGGT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAAGGTGATCTCCGATATGCAGAGTCTTGGCGTACAACAGGAAAATGTTAAGAAATTGGT 419
Query 541 TGGCCATTTGGTGGAGGTTGAAGATAGCAGTCAAGTAGTTTCTATAACCGGGATGGGCGG 600
||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 420 TGGCCATTTGGTGGA-G--GAAAATAGCAGTCAAGTGGTTTCTATAACCGGGATGGGCGG 476
Query 601 TATTGGTAAAACCACCCTTGCAAGACAAGTTTTCAATCATGAGACAGTAAAAAGTCATTT 660
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 TATTGGTAAAACCACCCTCGCAAGACAAGTTTTTAATCATGAGACAGTAAAAAGTCATTT 536
Query 661 TGCTCAACTCGCGTGGGTATGTGTTTCACAACAGTTTACAAGGAAGTATGTGTGGCAAAC 720
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 537 TGCTGGACTCGCGTGGGTATGTGTTTCACAACAGTTTACAAGGAAGTATGTCTGGCAGAC 596
Query 721 AATCTTGCGGAAAGTTGGGCCAGAATATATAAAGTTAGAGATGACGGAAGACGAACTTCA 780
|||||||||||| |||||||||| |||||| ||| ||||||||| ||||||||||||||
Sbjct 597 GATCTTGCGGAAACTTGGGCCAGAGTATATAGAGTCAGAGATGACAGAAGACGAACTTCA 656
Query 781 AGAAAAACTCTTTCGCCTATTGGGTACACGAAAGGCTTTGATTGTCCTTGATGATATATG 840
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 657 AGAAAAACTCTTTCAAGTATTGGAAACACAAAAGGCTTTGATTGTCCTTGATGATATATG 716
Query 841 GAGAGAAGAAGATTGGGACATGATAGAACCAATCTTTCCACTGGGAAAAGGCTGGAAAGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAGAGAAGAAGATTGGGACATGATAGAACCAATCTTTCCACTGGGAAAAGGCTGGAAAGT 776
Query 901 ATTACTTACTTCTCGTAATGAAGGTGTCGCATTACGAGCAAATCCAAATGGTTTCATCTT 960
||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 777 ATTGCTTACTTCTCGCAATGAGGGTGTCGCATTACGAGCAAATCCAAATGGTTTCACCTT 836
Query 961 TAAACCAGATTGCCTAACTCCTGAAGAGAGTTGGACAATTTTCCGAAGGATAGTTTTTCC 1020
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 837 TAAACCAGATTGCCTAACTCTTGAAGAGAGTTGGACAATTTTTCAAAGGATAGTTTTTCC 896
Query 1021 GGGAGAAAACACTACAGAATATAAAGTTGATGAAAAAATGGAAGAGCTTGGTAAGCAAAT 1080
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 897 GGGAGAAAACACTACCGAATATAAGGTTGATGAAAAAATGGAAGAGCTGGGTAAGCAGAT 956
Query 1081 GATCAAACATTGTGGAGGGTTACCGTTGGCTCTTAAGGTGTTAGGCGGGTTGTTAGTTGT 1140
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 957 GATCAAACATTGTGGAGGGTTACCATTGGCTCTTAAGGTGTTAGGCGGGTTGTTAGCTGC 1016
Query 1141 GCACTTCACATTGGATGAGTGGAAAAGGATCTATGGGAATATTAAATCTCACATCGTTGG 1200
||| | ||||||| |||||||||||||||| |||| |||||| || ||||||||||||||
Sbjct 1017 GCAATACACATTGCATGAGTGGAAAAGGATATATGAGAATATCAAGTCTCACATCGTTGG 1076
Query 1201 AGGAACTAGCTTCAATGACAAAAATATGAGTTCAGTTTATCATATTTTG-CATCTGAGCT 1259
|| |||||||||||||||| |||| ||||||| ||||||||||| ||| | ||||||||
Sbjct 1077 GGGGACTAGCTTCAATGACAGAAATTTGAGTTCGGTTTATCATATATTGTC-TCTGAGCT 1135
Query 1260 TTGAAGAGCTGCCTATATATTTGAAGCACTGCTTCCTCTACCTTGCCCAATTTCCTGAAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 TTGAAGAGCTGCCTATATATTTGAAGCACTGCTTCCTCTACCTTGCCCAATTTCCAGAAG 1195
Query 1320 ATTTTACAATAGATCTGGAAAAGTTATCTTACTACTGGGCCGCAGAAGGAATGCCAAGAC 1379
|||||||||||||| ||||||| |||||||| |||||||| ||||||||||| ||||| |
Sbjct 1196 ATTTTACAATAGATGTGGAAAAATTATCTTATTACTGGGCAGCAGAAGGAATACCAAGGC 1255
Query 1380 CTAGGTATTACGATGGAGCGACTATTCGAAAGGTCGGAGATGGATACATAGAAGAGTTGG 1439
| |||||||||||||||||||| |||||| || ||| |||||||||||||||||| ||||
Sbjct 1256 CAAGGTATTACGATGGAGCGACCATTCGAGAGATCGCAGATGGATACATAGAAGAATTGG 1315
Query 1440 TAAAGAGAAACATGGTTATTTCTGAGAGAGACGCTAGAACTAGGAGATTTGAAACATGTC 1499
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1316 TAAAGAGAAACATGGTTATTTATGAAAGAGACGCGAGAACTAGGAGATTTGAAACATGTC 1375
Query 1500 ACTTGCATGATATTGTGAGAGAAGTTTGTCTTCTTAAAGCTGAAGAAGAGAACTTGATA- 1558
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 1376 ACTTGCATGATATTGTGAGAAAAGTTTGTCTACTTAAAGCTGAAGAAGAGAACTTCCTAA 1435
Query 1559 -----G---A-A--AC-T---G--AAAACTCTAAATCTCCTAGTAAACCTCGCAGACTTG 1601
| | | || | | ||||||| ||||||| | ||||| ||||||||||||
Sbjct 1436 AAATTGTTCACAGCACATCAAGTGAAAACTCGAAATCTCTTTGTAAATCTCGCAGACTTG 1495
Query 1602 TCGTAAAAGGGGGTGATAAAACAGATATGGAGGGGAAGCTGAAGAATCCAAAACTTAGAT 1661
| ||| || | ||||| || || ||||||||| ||||||||||||||||||| ||||||
Sbjct 1496 TAGTACAACAGTGTGATGAACCATATATGGAGGAGAAGCTGAAGAATCCAAAAATTAGAT 1555
Query 1662 CTCTCTTGTTTATCGAGGAGCTTGGTGGTTATAGGGGATTCGAAGTATGGTTTACGAGGC 1721
||||||||||||||||| ||||| | || ||| | | ||| | | ||||||||||
Sbjct 1556 CTCTCTTGTTTATCGAGCAGCTTAG-----AT-GGGCAGTAAAAGGAAGCTTTACGAGGC 1609
Query 1722 TACAGTTGATGAGGGTTTTAGATCTC-CATGGA-GTTGAGTTTGGAGGGGAGTTACCCTC 1779
|||||||||||||||| |||||||| | || | ||| | ||||||||||||||||||||
Sbjct 1610 TACAGTTGATGAGGGTGTTAGATCTTTC-TG-ATGTTCATTTTGGAGGGGAGTTACCCTC 1667
Query 1780 TAGCATCGGACTGCTAATCCACTTGAGATATTTGAGTTTATATCGGGCAAAAGCATCTCA 1839
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1668 TAGCATCGGACTGCTAATCCACTTGAGATATTTGAGTTTATATCGGGCACTCGTATCTCA 1727
Query 1840 TCTACCTTCGTCTATGCAGAATTTGAAGATGCTGCTCTATTTAAACCTATGTGTACAA-- 1897
||||||||| || |||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 1728 TCTACCTTCTTCCATGCGGAATTTGAAGATGCTGCTGTATTTAAACCTATGTGTAGATCC 1787
Query 1898 -GA-GAG-T-TGTTACA-TTTACATTCCCAATTTCTTGAAAGAGATGCTAG-AGCTGAAA 1951
|| ||| | |||| || ||| |||||||||||| ||||||||||||| || | |||||
Sbjct 1788 TGATGAGGTATGTT-CAATTTCCATTCCCAATTTATTGAAAGAGATGC-AGGAATTGAAA 1845
Query 1952 TACCTCTCTCTCCCACTAAGAATGGATGATAAGAGCATGGGGGAGTGGGGGGATCTTCAG 2011
|||||||||||||| |||||||| |||||| | |||||| ||||||||| |||| |||
Sbjct 1846 TACCTCTCTCTCCCGTTAAGAATGCATGATACG--CATGGGAGAGTGGGGG-ATCTCCAG 1902
Query 2012 TTTATGACCCGGCTTAGAGCCCTCTCTATCTATATCAGAGGCAGGTTGAATATGAAAACT 2071
|||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1903 TTTATGACCCGGCTCAGAACCCTCTCTATCTATATCAGAGGCAGGTTGACTATGAAAACT 1962
Query 2072 CTATCTTCATCTCTAAGTAAACTGAGAGACTTGGAAAATCTTACTATCTGTTATTACCCG 2131
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1963 CTATCTTCATCTCTAAGTGAATTGAGACACTTGGAAAATCTTACTATCTGTTATTACCCG 2022
Query 2132 ATGTATGCTCCCATGAGTGGTATAGAAGGATTAGTTTTGGACTGCGATCAGCTCAAGCAT 2191
||||||||||||||||||| || |||||||||||||||||| |||| | | ||||| |||
Sbjct 2023 ATGTATGCTCCCATGAGTGCTAAAGAAGGATTAGTTTTGGATTGCGCTAATCTCAAACAT 2082
Query 2192 CTGAATTTGAGAATATATATGCCAAGGTTACCTGATGAACAACATTTTCCTTGGCATCTT 2251
||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 2083 CTGAAGTTGAGAATATATATGCCAAGGTTACCTGATGAACAACAATTTCCTTCTTACCTT 2142
Query 2252 CGAAACATATCTCTAGCTGAGTGTTGTTTGAAGGAGGATCCAATGCCGATTTTAGAGAAG 2311
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2143 AGAAACATATCTCTAGCTGAGTGTTGTTTGAAGGAAGATCCAATGCCGATTCTAGAGAAG 2202
Query 2312 CTGCTTCAATTAAACGAGGTCAGTTTATCTCATCAATCTTTCTGTGGGAAGAGAATGGTT 2371
||| |||| ||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 2203 CTGATTCACTTAAATGAGGTCAGTTTATCGCATCAATCTTTTTGCGGGAAGAGAATGGTT 2262
Query 2372 TGCTCGGATGGTGGGTTTCCTCAATTGCAAAAGCTCGATTTGTGTGGACTAGAGGAGTGG 2431
||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 2263 TGCTCGGGTGGTGGGTTTCCTCAATTGCTGAAGCTCGATTTGTGTGGACTAGATGAATGG 2322
Query 2432 GAAGAGTGGATAGTCGAAGAAGGCTCCATGCCACGGCTTCATAAGCTGACTATCCGCAAC 2491
|||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 2323 GAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAAGCTGACTCTCCGCAAC 2382
Query 2492 GATCCTAAATTAAAGGAGCTTCCTGATGGGTTGAAATTTATCACTTCCTTGAAAGAAGTG 2551
|||||||||||||||||| ||||||||||| ||||||||||||| || ||| ||||| ||
Sbjct 2383 GATCCTAAATTAAAGGAGTTTCCTGATGGGCTGAAATTTATCACATCTTTGGAAGAACTG 2442
Query 2552 CATGTCATCTTAAATAATTGGGACTTTAAGAAGAAACTGTCCAGGGGAGGAGAAGATTAC 2611
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2443 CATGTCATCTTAAATAATTGGGACTTTAAGAAGAAACTGTCCAGGGGAGGAGCAGATTAT 2502
Query 2612 TACAAAGTCCAACACATTCCTCTTGTTCGATTTCTTTAAGCCTATCCAATTGTAGTCACT 2671
||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||||
Sbjct 2503 TACAAAGTCCAACACATTCCTCTCGTTCGATTTCTCTAAGCCTATCAAATTATAGTCACT 2562
Query 2672 CAGGTAATATATTCTTTCCTCATGTCATTCTAG-AGCTAGTATAATTCTCTTTGTGTTGT 2730
||||||||||||||||||| ||||||||||| | | |||||||||||||||| |
Sbjct 2563 CAGGTAATATATTCTTTCCGCATGTCATTCT-GCAATTAGTATAATTCTCTTT-T----- 2615
Query 2731 CAGTTATTTATGTGTTACCAAGCGACTCGGCTTGACTGCTACAATC 2776
| || | | |||||||||||||||||||||||||||||||||
Sbjct 2616 -A-TT-T----GCGTTACCAAGCGACTCGGCTTGACTGCTACAATC 2654
> Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577
Length=1827
Score = 712 bits (385), Expect = 0.0
Identities = 881/1112 (79%), Gaps = 67/1112 (6%)
Strand=Plus/Plus
Query 893 TGGAAAGTATTACTTACTTCTCGTAATGAAG-GTGTCGCATTACGA-GCAAATCCAA-AT 949
||||||||| |||||||||| || || | || | || || |||| | ||| |||||| ||
Sbjct 1 TGGAAAGTACTACTTACTTCACGCAACG-AGAGAGTAGCCTTAC-ATGCAGATCCAACAT 58
Query 950 GGTTTCATC-TTTAAACCAGATTGCCTAACTCCTGAAGAGAGTTGGACAATTTTCCGAAG 1008
| | | | ||||||||| | |||||||| |||| | ||||||| | ||||||||||
Sbjct 59 -G-TGCCGCTTTTAAACCAAAGTGCCTAACAATTGAAAACAGTTGGATACTTTTCCGAAG 116
Query 1009 GATAGTTTTTCCGGGAGAAAACACTACA-GA-ATATAAAGTTGATGAAAAAATGGAAGAG 1066
||||| ||||| | |||| || ||| | || ||| ||| ||| | |||||||||||
Sbjct 117 GATAGCATTTCC--TATAAAAGACGACACAACATTTAAGGTTAATGTAGAAATGGAAGAG 174
Query 1067 CTTGGTAAGCAAATGATCAAACATTGTGGAGGGT-TACCGTTGGCTCTTAAGGTGTTAGG 1125
| ||| |||| |||||||||||||||||| ||| |||| |||||| |||||||||||||
Sbjct 175 ATGGGTGAGCAGATGATCAAACATTGTGGA-GGTCTACCATTGGCTGTTAAGGTGTTAGG 233
Query 1126 CGGGTTGTTAGTTGTGCACTTCACATTGGATGAGTGGAAAAGGATCTATGGGAATATTAA 1185
|||||||||| || ||| | |||||| |||||||||||||||| ||| ||||||||
Sbjct 234 TGGGTTGTTAGCTGCGCAATGCACATTTCATGAGTGGAAAAGGATAAATGAGAATATTAG 293
Query 1186 ATCTCACATCGTTGGAGGAACTAGCTTCAATGACAAAAATATGAGTTCAGTTTATCATAT 1245
| |||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||| |
Sbjct 294 AGCTCACATCGTTGGAGGGACTACCTTCAATGACATAAATATCAGTTCAGTTTATCATGT 353
Query 1246 TTTGCATCTGAGCTTTGAAGAGCTGCCTATATATTTGAAGCACTGCTTCCTCTACCTTGC 1305
| | ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 354 TCTAAATCTGAGTTTTGAAGAGCTGCCTGTTTATTTGAAGCACTGCTTCCTCTACCTTGC 413
Query 1306 CCAATTTCCTGAAGATTTTACAATAGATCTGGAAAAGTTATCTTACTACTGGGCCGCAGA 1365
||| ||||| ||||||| | |||||| ||| || || || || || ||||| | |||
Sbjct 414 CCATTTTCCAGAAGATTATGTGATAGATGTGGGGAATTTGTCCTATTATTGGGCTGGAGA 473
Query 1366 AGGAATGCCAAGACCTAGGTATTACGATGGAGCGACTATTCGAAAGGTCGGAGATGGATA 1425
|||||| | |||||| |||||||| |||||||| || |||||| |||||| ||||| |||
Sbjct 474 AGGAATACAAAGACCGAGGTATTATGATGGAGCAACCATTCGAGAGGTCGCAGATGAATA 533
Query 1426 CATAGAAGAGTTGGTAAAGAGAAACATGGTTATTTCTGAGAGAGACGCTAGAACTAGGAG 1485
| || |||| ||||| |||||||||||||| ||| || | | ||||||||||||| ||
Sbjct 534 CGTAAAAGAATTGGTCAAGAGAAACATGGTCATTGCTAATATAGACGCTAGAACTTCAAG 593
Query 1486 ATTTGAAACATGTCACTTGCATGATATTG-TGAGAGAAGTTTGTCTTCTTAAAGCTGAAG 1544
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| |
Sbjct 594 ATTTGAAACATGTCACTTGCATGATAT-GATGAGAGAAGTTTGTCTGCTTAAAGCTGAGG 652
Query 1545 AAGAGAACTT-G-A--TA--G---A-AA-C---TG---A-AAACTCTAAATCTCCTAGTA 1586
||||||| || | | || | | || | | | ||| ||| |||||||| |||
Sbjct 653 AAGAGAATTTTGTACATATTGTTGATAAACGCCTACCTACAAAGTCTCAATCTCCTTGTA 712
Query 1587 AACCTCGCAGACTTGTC-GTAAAAGGGGGTGATAAAACAGAT-ATGG-A-GGGGAAGCTG 1642
|| |||||||| ||| | ||| | | |||| ||||| || || | |||| || ||
Sbjct 713 AATCTCGCAGAATTG-CAGTACACCAGCTTGATGAAACATATCATCCTAAGGGGGAGATG 771
Query 1643 AAGAATCCAAAACTTAGATCTCTCTTGTTTATCGAGGAGCTTGGTGGTTATAGG--GGAT 1700
|| ||||||||||||||||||||||||| || || |||||| | | ||| ||||
Sbjct 772 AA---TCCAAAACTTAGATCTCTCTTGTTTTTC-AG---CTTGGTAG--A-AGGTTGGAT 821
Query 1701 TCGA--AG-T--ATGGTTTACGAGGCTACAGTTGATGAGGGTTTTAGATCTC-CATGGAG 1754
| | || | || |||||| ||| |||||||| |||||| ||||||||| || | |
Sbjct 822 GCCATCAGATTTATTGTTTACAAGGTTACAGTTGTTGAGGGCATTAGATCTCTCAAGAAC 881
Query 1755 TTGAGTTTGGAGG-GG-A-GTTACCCTCTAGCATCGG-ACTGCTAATCCACTTGAGATAT 1810
| |||||| ||| || | |||||||||||| || || | ||| |||||||||||||||
Sbjct 882 TC-AGTTTGAAGGAGGGAAGTTACCCTCTAGTATTGGGAA-GCTCATCCACTTGAGATAT 939
Query 1811 TTGAGTTTATATCGGGCAAAAGCATCTCATCTACCTTCGTCTATGCAGAATTTGAAGATG 1870
||||||||||| | |||| | | | ||||||||||||| || ||| ||| |||||| |
Sbjct 940 TTGAGTTTATACCAGGCACATGTAACTCATCTACCTTCCTCCATGTGGAACCTGAAGAAG 999
Query 1871 CTGCTCTATTTAAACCTATGTGTACAAGAGAGT-TGTTACATT-TACATTCCCAATTTCT 1928
|||||||||||||||||||||||| | || | | | || | ||||| |||||||| |
Sbjct 1000 CTGCTCTATTTAAACCTATGTGTAGGTGCGA-TATCTC-CAATCTACATGCCCAATTTTT 1057
Query 1929 TGAAAGAGATGCTAGAGCTGAAATACCTCTCT 1960
|||||||||||| ||| ||| ||||||||||
Sbjct 1058 TGAAAGAGATGCGAGAATTGACATACCTCTCT 1089
> Ahg494924 jgi|Araly1|494924|fgenesh2_kg.8__740__AT5G43470.1
Length=3033
Score = 97.1 bits (52), Expect = 6e-19
Identities = 327/455 (72%), Gaps = 38/455 (8%)
Strand=Plus/Plus
Query 2209 TATG-CCAAGGTTACCTGATGAACAACATTTTCCTTGGCATCTTCGAA-ACATATCTCTA 2266
|||| | ||| || |||||| |||| || || ||| || ||| ||| |||||||||||
Sbjct 2321 TATGTCAAAGATT-CCTGATCAACATCAATTCCCTCCCCACCTT-GAACACATATCTCTA 2378
Query 2267 GCTGAGTGTTGTTTGAAGGAGGATCCAATGCCGATTTTAGAGAAGCTGCTTCAATTAAAC 2326
| || | || |||||||||||||||||||| |||| ||| ||||||| || ||
Sbjct 2379 TTTCTTTGCCGCATGGAGGAGGATCCAATGCCGATTCTAGAAAAGTTGCTTCATTTGAA- 2437
Query 2327 G-AGGTCAGTTTA-TCTCATCAATCTTTCTG-TGGGAAGAGAATGGTT-TGCTCGGATGG 2382
| ||| | ||| || | | ||||| | ||||| || ||| ||| ||||| | ||
Sbjct 2438 GTCGGTTAAATTAGGATC-TGACGCTTTC-GTTGGGAGGAAAAT-GTTGTGCTCAAAAGG 2494
Query 2383 TGGGTTTCCTCAATTGCAAAAGCTC--GATTTGTGTGGACTAGAGGAGTGGGAAGAGTGG 2440
|| ||||||||||| | |||| || | | || || | ||||| ||||||||||
Sbjct 2495 CGGATTTCCTCAATT--ACGTGCTCTAGAAATATCTGAACAATTGGAGTTGGAAGAGTGG 2552
Query 2441 ATAGTCGAAGAAGGCTCCATGCCACGGCTTCATAAGCTGACTATCCGCAACGA-T-CCTA 2498
||||| |||||||| || |||||| | |||| || | ||||| | || | | |
Sbjct 2553 ATAGTGGAAGAAGGGTCGATGCCATGTCTTCGTACTTTAACTAT--AC-TTGATTGCAAA 2609
Query 2499 AA-TTAAAGGAGCTTCCTGATGGGTTGAAATTTATCACTTCCTTGAAA-GAAGTGCATGT 2556
|| || ||||| ||||||||||| | |||| || || ||||| ||| ||| || | |
Sbjct 2610 AAGTTGAAGGAACTTCCTGATGGACTCAAATACATGACATCCTT-AAAGGAACTG-AAG- 2666
Query 2557 CATCT-TA--AAT-AATTGGGACTTTAAGAAGAAACTG-T-CCAGGGGAGGAGAAGATTA 2610
|| | | ||| || |||| | ||| ||||| || | ||| || |||||||||||
Sbjct 2667 -AT-TAGAGGAATGAAGAGGGAGTGGAAGGAGAAATTGATACCA--GGTGGAGAAGATTA 2722
Query 2611 CTACAAAGTCCAACACATTCCTCT-TGTTCGATTT 2644
||||||||||||||||||||| | ||||| ||||
Sbjct 2723 CTACAAAGTCCAACACATTCC-CGATGTTCAATTT 2756
> Ahg923884 jgi|Araly1|923884|scaffold_105165.1
Length=2759
Score = 76.8 bits (41), Expect = 8e-13
Identities = 147/196 (75%), Gaps = 16/196 (8%)
Strand=Plus/Plus
Query 2208 ATATGCCAAGGTTACCTGATGAACAAC-ATTTTCCTTGGCATCTT-CGAAACATATCTCT 2265
||||||||||||| || ||| || | | | || ||| |||||| || |||||| ||
Sbjct 2285 ATATGCCAAGGTTTCCAGATCAATACCGA-TTCCCTCCCCATCTTGCG-CACATATGGCT 2342
Query 2266 -AGCTGAGTGTTGTTTGAAGGAGGATCCAATGCCGATTTTAGAGAAGCTGCTTCAATTAA 2324
| | || ||| | || |||| ||||| ||||||||| |||| ||| ||||||| || |
Sbjct 2343 GATCGGA-TGTCGCATGGAGGAAGATCCGATGCCGATTCTAGAAAAGTTGCTTCATTTGA 2401
Query 2325 ACGAGGTCAGTTTATC--TCATC-AAT-CTTTCTGTGGGAAG-AGAATGGTTTGCTCGGA 2379
| | |||||||||| ||||| | | |||| ||||||| |||||||| |||||| |
Sbjct 2402 A--A--TCAGTTTATCTTTCATCTGGTGCATTCT-TGGGAAGTAGAATGGTGTGCTCGAA 2456
Query 2380 TGGTGGGTTTCCTCAA 2395
|| || |||||||||
Sbjct 2457 AGGCGGATTTCCTCAA 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105967061590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5