BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59640.2
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925128 jgi|Araly1|925128|scaffold_200689.1 1051 0.0
> Ahg925128 jgi|Araly1|925128|scaffold_200689.1
Length=835
Score = 1051 bits (569), Expect = 0.0
Identities = 639/674 (95%), Gaps = 0/674 (0%)
Strand=Plus/Plus
Query 161 TGATTAAGTTGATGGATCCGAGTGGGATGATGAACGAAGGAGGACCGTTTAATCTAGCGG 220
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TGATTTAGTTGATGGATCCGAGTGGGATGATGAACGAAGGAGGACCGTTTAATCTAGCGG 69
Query 221 AGATCTGGCAGTTTCCGTTGAACGGAGTTTCAACCGCCGGAGATTCTTCTAGAAGAAGCT 280
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 70 AGATCTGGCAGTTTCCGTTGAACGGAGTTTCAACCGCCGGAGATTCTTCGAGAAGAAGCT 129
Query 281 TCGTTGGACCGAATCAGTTCGGTGATGCTGATCTAACCACAGCTGCTAACGGTGATCCAG 340
||| |||||||||||||||||| ||| | ||||||||| | ||||||||||| ||||| |
Sbjct 130 TCGCTGGACCGAATCAGTTCGGAGATACCGATCTAACCGCCGCTGCTAACGGCGATCCGG 189
Query 341 CGCGTATGAGTCACGCGTTGTCTCAGGCGGTTATTGAAGGTATCTCCGGCGCTTGGAAAC 400
||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 190 CGCGTATGAGTCACGTACTGTCGCAGGCCGTTATTGAAGGTATCTCCGGCGCGTGGAAAC 249
Query 401 GGAGGGAAGATGAGTCTAAGTCGGCGAAGATCGTCTCCACCATTGGCGCTAGTGAAGGTG 460
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 250 GGAGGGAAGATGAGTCTAAGTCGGCGAAGATCGTCTCCATAAATGGCGCGAGTGAAGGTG 309
Query 461 AGAACAAAAGACAGAAGATAGATGAAGTGTGTGATGGGAAAGCAGAAGCAGAATCGCTAG 520
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 310 AGAACAAAAGACAGAAGATAGATGAAGTGTGTGATGGGAAAGCGGAAGCGGAATCGCTAG 369
Query 521 GAACAGAGACGGAACAAAAGAAGCAACAGATGGAACCAACGAAAGATTATATTCATGTTC 580
|||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||
Sbjct 370 GAACAGAGACGGAACAAAAGAAGCTACAAATCGAACCGACGAAAGATTATATTCATGTTC 429
Query 581 GAGCTAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCTGAAAGAGCGAGAAGAGAGA 640
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCTGAAAGAGCGAGAAGAGAGA 489
Query 641 AAATAAGTGAGCGGATGAAAATCTTGCAAGATCTTGTTCCGGGATGTAACAAGGTTATTG 700
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 490 AAATAAGCGAACGGATGAAAATCTTGCAAGATCTTGTACCGGGATGTAACAAGGTTATTG 549
Query 701 GAAAAGCACTTGTTCTAGATGAGATAATTAACTATATACAATCATTGCAACGTCAAGTTG 760
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 550 GAAAAGCACTTGTTCTTGATGAGATAATCAACTATATACAATCATTGCAACGTCAAGTTG 609
Query 761 AGTTCTTATCGATGAAGCTTGAAGCAGTCAACTCAAGAATGAACCCTGGTATCGAGGTTT 820
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 610 AGTTCTTATCGATGAAGCTTGAAGCGGTCAATTCAAGAATGAACCCTGGTATTGAGGTTT 669
Query 821 TTCCACCCAAAGAG 834
||||||||||||||
Sbjct 670 TTCCACCCAAAGAG 683
Score = 257 bits (139), Expect = 2e-67
Identities = 147/151 (97%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 1241 AGTTTGGTCAGCAAGCGTTTGAGAATCCGGAGATACAGTTCGGGTCGCAGTCTACGAGGG 1300
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 682 AGTTTGGTCAGCAAACATTTGAGAATCCGGAGATGCAGTTCGGGTCGCAGTCTACGAGGG 741
Query 1301 AATACAGTAGAGGAGCATCACCAGAGTGGTTGCACATGCAGATAGGATCAGGTGGTTTCG 1360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 742 AATACAGTAGAGGAGCATCACCAGAGTGGTTGCATATGCAGATAGGATCAGGTGGTTTCG 801
Query 1361 AAAGAACGTCTTGATAAAGAAACAACACTTG 1391
|||||||||||||||||||||||||||||||
Sbjct 802 AAAGAACGTCTTGATAAAGAAACAACACTTG 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5