BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59650.1
Length=2086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475347 jgi|Araly1|475347|fgenesh2_kg.2__477__AT1G59650.1 3000 0.0
> Ahg475347 jgi|Araly1|475347|fgenesh2_kg.2__477__AT1G59650.1
Length=2050
Score = 3000 bits (1624), Expect = 0.0
Identities = 1927/2066 (93%), Gaps = 50/2066 (2%)
Strand=Plus/Plus
Query 50 GaaaaaaaGCTTCTTCTTCACCAAA-CAGTTTGTCTAGTTGTCTGTGTCTCATTTACCAT 108
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 3 GAAAAAAAGCTTCTTCTTCACCAAATTA-TTTGTCTAGTTGTCTGTGTCTCATTTACCAT 61
Query 109 ATTTTCTCTCTAAATTTTTCCCATTACTGGATTTGAAGATCGTGTCTGGCAGATTTTATC 168
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 62 A-TTTCTCTCTAAATATTTCCCATTACTGGATTTGAAGATCGTGTCTGGCAGATTCTATC 120
Query 169 TGATTTTCTGATC---------AGAGAGAAGTAAAAGGAAACAACTTTTTTGTTAGCTTT 219
||| ||||||||| ||||||||| ||||||||||||| ||||| | ||||
Sbjct 121 TGA-TTTCTGATCAGAAGAAGAAGAGAGAAGAAAAAGGAAACAAC-TTTTT-CT--CTTT 175
Query 220 CTCTCTCTACAAGTTTTGGGTTTTTAAGAGAAAGAGATAAAGGAGACAGCTTtctctctc 279
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 176 CTCTCTCTACAAGTTCTGGGTTTTTAAGAGAAAGAGATCAAGGAGACAGCTTTCTCTCTC 235
Query 280 tgtctctctctAAAAGTTCTGGGTTTAGAAAGAGATCTTTCTTATATGTTGAATTTGTGA 339
| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 236 TCTCTATCTCTAAAAGTTCTGGGTTTAGAAAGAGA----TCTTATATGTTGAATTTGTGA 291
Query 340 TC----AGAG--GTGAGAGAGATGGGAGGTTGCGTGTCAACGCCTAAGAGCTGTGTAGGA 393
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCAGAGAGAGAAGAGAGAGAGATGGGAGGTTGCGTGTCAACGCCTAAGAGCTGTGTAGGA 351
Query 394 GGTAAAATAAGGTCAAGCAAAAGGAGAAAGACTCGGACAAGACGAAAGATTCAGAAGAAG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGTAAAATAAGGTCAAGCAAAAGGAGAAAGACTCGGACAAGACGAAAGATTCAGAAGAAG 411
Query 454 AGAGTTGTTTCTTCTTCTCGCTTATCTGACGGATCTTTCGATAATAATCCCACTTTCAGA 513
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 412 AGAGTTGTTTCTTCTTCTCGCTTATCTGACGGATCTTTCGATAATAATCACACTTTCAGA 471
Query 514 GCAAGTGTTGATGAAGCATGGTTTGATTCCAATCTCGCCTTTGAAACCGATTGTGATGAT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GCAAGTGTTGATGAAGCATGGTTTGATTCCAATCTCGCCTTTGAAACCGATTGTGATGAT 531
Query 574 GACTTTCATAGTGTTCAGGAAGATACGTTGTCAGTGAACGGATGTGAGCGTATCTCAGTA 633
|| ||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 532 GATTTTCACAGTGTTCAGGAAGATATTTTGTCAGTAAACGGAGGTGAGCGTATCTCAGTC 591
Query 634 TCGAGTATGTCATCTGTTAAAGACTCTAACCTTGGTGGTTCCGCTCGGAATTCTCTAAGC 693
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCGAGTATGTCATCTGTTAGAGACTCTAACCTTGGTGGTTCCGCTCGGAATTCTCTAAGC 651
Query 694 GATGTCATCTCACAATCAAAATCAGAGAGTGCTTTGATTGACACTAAGCAGGCTGTTTTC 753
|||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 652 GATGTCATTTCACAATCAAAAGCAGAGAGTGCTTTGATTGACGCTAAGCAGCCTGTTTTT 711
Query 754 ATCGACGAGATATCTTCAAATGCTGATGGTAGCTCTA-ATAAAGATGAAGGGTTGTTGGA 812
|| |||||||||||||||||||||| || |||||||| | ||||||||||| ||||||||
Sbjct 712 ATTGACGAGATATCTTCAAATGCTGGTGATAGCTCTAGA-AAAGATGAAGGATTGTTGGA 770
Query 813 AAACTGCGGGATTCTTCCGAGTAATTGTTTGCCTTGTCTTAATTCAACTGTTC-CTTCTA 871
||||||||||||||||||||| ||||||||||| |||||||||| |||||||| || |||
Sbjct 771 AAACTGCGGGATTCTTCCGAGCAATTGTTTGCCATGTCTTAATTTAACTGTTCACT-CTA 829
Query 872 TTGAAAAGAGAAGGTCTTTAAGCTCTAGCCCTCCAAGTACGAGGAAAAAAGCTGCGGTTA 931
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 830 TTGAAAAGAGAAGGTCTTTAAGCTCTAGCCCTCCGAGTACGAGGAAAAAAGCTGCGCTTA 889
Query 932 AACTATCTTTCAAGTGGAGAGAAGGGCACCCTACTGGTCCTTTATTTTCTACAACAATGC 991
||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct 890 AACTATCTTTCAAGTGGAGAGAAGGGCACGCTACCGGTCCTTTATTTTCTACAAAAATGC 949
Query 992 AGTTGCAGAGACCGATGGCAGGTTCTCAGGTTCCGTTTTGTCCACTCGAAAAGAAAATGT 1051
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 950 AGTTGCAGAGACCGATGGCAGGTTCTCAGGTTCCGTTTTGTCCGCTCGAAAAGCAAATGT 1009
Query 1052 TTGATTCTTGGTCAATTATTGAGCCTGGTAGTTTCCGGGTTCGTAGCAAAACTTATTTCA 1111
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1010 TCGATTCTTGGTCAATTATTGAGCCAGGTAGTTTCCGGGTTCGTAGCAAAACTTATTTCA 1069
Query 1112 GAGATAAGAAGAAAGAGCTTGCACCAAACTATGCTGCATATAATCCATTTGGTGTCGATG 1171
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GAGAAAAGAAGAAAGAGTTTGCACCAAACTATGCTGCATATAATCCATTTGGTGTCGATG 1129
Query 1172 TATTTTTATCTCAACGTAAAGTAAACCATATAGCGCAATACGTGGAGCTTCCTGTTGTTA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1130 TATTTTTATCTCAACGTAAAGTAAACCATATAGCGCAATACGTGGAGCTTCCTATTGTTA 1189
Query 1232 CTACCACCCCGACTAAGCTCCCATCAATCCTTGTTGTAAATGTTCAGATTCCATTGTATC 1291
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCACCACCCCGACCAAGCTCCCATCAATCCTTGTTGTAAATGTTCAGATTCCATTGTATC 1249
Query 1292 CAGCTGCAATTTTTCATGGTGAAACTGATGGAGAAGGAATGAATTTCGTTTTATACTTTA 1351
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1250 CAGCTGCAATTTTTCAAGGTGAAACTGATGGAGAAGGAATGAATTTTGTTTTATACTTTA 1309
Query 1352 AACTTTCGGATAACTATTTAAAGGAGCTTCCACCACATTTTCAAGAAAGCATTCAGAGAT 1411
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1310 AACTTTCGGATAATTATTTAAAGGAGCTTCCACCTCATTTTCAAGAAAGCATTCAGAGAT 1369
Query 1412 TACTAGATGATGAGGTTGAGAAAGTTAGAGGCTACACTACTG-ACACGAATGTACCCTTT 1470
||||||||||||||||||||||||||||||||| || | || | || ||||||||||||
Sbjct 1370 TACTAGATGATGAGGTTGAGAAAGTTAGAGGCTTTACCA-TGGATACAAATGTACCCTTT 1428
Query 1471 AGAGAACGGTTAAAGATATTGGGTCGTGTTGCGAATGTAGACGATCTTCAGTTGAATGGT 1530
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1429 AGAGAACGGTTAAAGATATTGGGTCGTGTTGCGAATGTAGATGATCTCCAATTGAATGGC 1488
Query 1531 GCAGAGAAAAAACTCATGAATGCTTATAACGAAAAACCTGTGCTTTCACGTCCACAGCAC 1590
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GCAGAGAAAAAACTTATGAATGCTTATAACGAAAAACCTGTGCTTTCACGTCCACAGCAC 1548
Query 1591 GAGTTCTACTCGGGTGAAAATTACTTTGAGATTGATATTGATATGCATAGATTCAGTTAT 1650
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1549 GAGTTCTACTCGGGTGAAAATTACTTTGAGATTGATATCGATATGCATAGATTCAGTTAT 1608
Query 1651 ATATCGCGGAAAGGATTTGAAGCATTTTTAGACAGGCTAAAGAACTGTGTTCTTGATGTT 1710
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1609 ATATCGCGGAAAGGATTTGAAGCATTTTTAGACAGGCTCAAGCACTGTGTTCTTGATGTT 1668
Query 1711 GGACTCACAATTCAGGGGAATAAACCGGAGGAGTTACCGGAGCAGATTTTGTGTTGCATC 1770
|||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||
Sbjct 1669 GGACTCACAATTCAGGGGAATAAACCAGAGGAATTACCGGAGCAGATTCTGTGTTGTGTC 1728
Query 1771 CGGTTAAATGGGATTGATTACATGAATTATCATCAGTTAGCTCTTAGTCAAGAAGTCCTA 1830
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 CGGTTAAACGGGATTGATTACATGAATTATCATCAGTTAGCTCTTAGTCAAGAAGTCCTA 1788
Query 1831 TGATACTAAA-CAAAAGATAT-GACCttt-ttttttgttgttgttctttatcttcttttc 1887
||||| ||| |||| || | | || ||||||||||||||| ||||||||||||||
Sbjct 1789 TGATAA-AAAGCAAA-GACCTCG-CCGGAATTTTTTGTTGTTGTTGTTTATCTTCTTTTC 1845
Query 1888 ttttgttcCTCAAGAACACAAAATCTAAGAGATACATCGTTTTGAAGAAGAAGTCAATAA 1947
||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 1846 TTTTGTTCCTCAAGAACACAAAATCTAAGAGATTTTTCGGTTTGAAGAAGAACTCAATAA 1905
Query 1948 TGGAAGCATGAGTATATACATGATACATCATTCCGAAACCTGATCATTTCTCGGAGATTG 2007
||||||||||| |||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct 1906 TGGAAGCATGAATATATAAACAATACATCATTCCGAAACATGATCATACCTCGGAGATTG 1965
Query 2008 CCTACGACTCTGTACAGTGGCCAATATT--G-CT----C--ATCATAAATATCATAATTC 2058
|||||||||||||||||||||||||||| | || | |||||||||||||||| |
Sbjct 1966 CCTACGACTCTGTACAGTGGCCAATATTTCGACTAGTGCTCATCATAAATATCATAACTG 2025
Query 2059 AATGAGAAATCAC-CAACAACAGTAG 2083
||||||||||||| || |||||||||
Sbjct 2026 AATGAGAAATCACACA-CAACAGTAG 2050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78465904700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5