BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59660.1
Length=3185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315354 jgi|Araly1|315354|fgenesh1_pm.C_scaffold_2000387 649 0.0
> Ahg315354 jgi|Araly1|315354|fgenesh1_pm.C_scaffold_2000387
Length=663
Score = 649 bits (351), Expect = 0.0
Identities = 513/585 (88%), Gaps = 36/585 (6%)
Strand=Plus/Minus
Query 363 TCAGTCAAGTCCTTTTGGAAGCACCACACAACAATCACAGCCTGCCTTTGGAAACAGCAC 422
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 663 TCAGTCAAGTCCTTTCGGAAGCACCACACAGCAATCACAGCCTGCCTTTGGAAACAGCAC 604
Query 423 TTTT-G---GT-T-CA------------TC-A--ACACCT---TTTGGTGCCTCAACCAC 458
|||| | || | || || | || ||| ||||||||||||| |||
Sbjct 603 TTTTGGTTCGTCTACACCTTTTGGTGCCTCTAGCACGCCTGCCTTTGGTGCCTCAAACAC 544
Query 459 -GCCTGCCTTTGGTGCCTCTAGCAC-GCCTGCCTTTGGTGTCTCAAACACTTCCGGGTTT 516
|| || ||||| ||||| | ||| || || ||||| | |||||||||||||| ||||
Sbjct 543 TTCC-GCATTTGGCGCCTCAAACACTTCC-GCATTTGGCGCCTCAAACACTTCCGCGTTT 486
Query 517 GGAGCCACAAACACACCCGGATTTGGTGCCACAAACACAACAGGGTTTGGTGGCAGTAGC 576
|||||||||| ||||||||| ||||||||||||| |||| | || ||||||| || ||||
Sbjct 485 GGAGCCACAAGCACACCCGGGTTTGGTGCCACAAGCACACCCGGATTTGGTGCCACTAGC 426
Query 577 ACACCTGGGTTTGGGGCATCAAGCACGCCTGCCTTTGGCTCCACA-AACACGCCTGCTTT 635
|||||||||||||| |||||||||||| ||||||||||||||| | ||||| ||||||||
Sbjct 425 ACACCTGGGTTTGGTGCATCAAGCACGTCTGCCTTTGGCTCCA-ATAACACACCTGCTTT 367
Query 636 TGGTGCTTCAAGTACTCCTTTATTCGGCTCCTCGAGCTCACCTGCATTTGGTGCGTCACC 695
||||||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 366 TGGTGCTGCAACTACTCCTTCATTCGGCTCCTCGAGCTCACCTGCATTTGGCGTGTCACC 307
Query 696 TGCTCCAGCCTTTGGTAGCTCTGGCAATGCATTTGGCAACAATACCTTCAGTTCTGGAGG 755
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 306 TGCTCCAGCCTTTGGTAGCTCTGGCAATGCATTTGGTAACAATGCCTTCAGTTCTGGAGG 247
Query 756 TGCTTTTGGTTCATCAAGCACTCCTACGTTTGGGGCATCTAACA---CT--T-CTGCCTT 809
|||||||||| |||||||||||||| |||||||||||||||||| || | |||||||
Sbjct 246 TGCTTTTGGTGCATCAAGCACTCCTGCGTTTGGGGCATCTAACACTCCTGCTCCTGCCTT 187
Query 810 TGGGGCATCAAGTTCCCCATCTTTTAATTTCGGTTCTTCCCCAGCTTTTGGACAGTCTAC 869
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TGGGGCATCAAGTACCCCATCTTTTAATTTCGGTTCTTCCCCAGCTTTTGGACAGTCTAC 127
Query 870 CTCAGCATTTGGTAGCAGTTCCTTTGGTTCTACACAATCTTCCTT 914
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 126 CTCAGCATTTGGTAGCAGTTCCTTTGGTTCTACACAATCTACCTT 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120327083955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5