BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59670.1
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907524 jgi|Araly1|907524|Al_scaffold_0002_605 989 0.0
> Ahg907524 jgi|Araly1|907524|Al_scaffold_0002_605
Length=699
Score = 989 bits (535), Expect = 0.0
Identities = 637/687 (93%), Gaps = 4/687 (1%)
Strand=Plus/Plus
Query 26 ATGGGAGA-GAGAGAGGAAGTGAAACTGTTGGGAACATGGTACAGTCCGGTCGTGATAAG 84
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGGAGAGGA-AGAGGAAGTGAAACTGTTGGGAACATGGTACAGTCCGGTCGTGTTAAG 59
Query 85 AGCAAAGATCGCTCTTCGTCTCAAATCGGTTGATTATGATTACGTTGAAGAGGATTTGTT 144
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AGCAAAGATAGCTCTTCGTCTCAAATCGGTTGATTATGATTACGTTGAAGAAGATTTGTT 119
Query 145 CGGATCTAAGAGTGAGCTTCTTCTCAAATCGAACCCTATTTTCAAGAAAGTCCCGGTTCT 204
|||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 120 CGGATCAAAGAGTGAGCTTCTTCTCAAATCGAACCCGGTTTACAAGAAAGTCCCGGTTCT 179
Query 205 CATCCACAACACTAAACCGGTTTGTGTA-TCTCTTAACATCGTTGAATACATCGACGAGA 263
||||||||||| |||||||||||| | | |||||||||||||| || |||||||| ||||
Sbjct 180 CATCCACAACAGTAAACCGGTTTGCG-AGTCTCTTAACATCGTAGAGTACATCGATGAGA 238
Query 264 CGTGGAACTCATCTGGATCGTCCATTCTTCCTTCTCATCCTTATGATCGTGCCCTTGCTC 323
||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||
Sbjct 239 CGTGGAACTCATCTGGACCGTCCATTCTTCCTTCTCATCCTCATGATCGAGCTCTTGCTC 298
Query 324 GCTTCTGGTCTGTCTTTGTTGATGACAAGTGGTTACCGACTTTGATGGCAGCTGTGGTCG 383
|||||||||||| ||| ||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 299 GCTTCTGGTCTGCCTTCGTTGATGACAAGTGGTTTCCGGCTTTGATGGCAGCAGTGGTCA 358
Query 384 CTAAATCGGAAGAAGCAAAAGCAAAAGGCATGGAAGAAGTGGAAGAAGGGTTGTTGCAAC 443
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTAAATCGGAAGACGCAAAAGCAAAAGGCATGGAAGAAGTGGAAGAAGGGTTGTTGCAAC 418
Query 444 TAGAAGCTGCGTTTATTGCTCTAAGCAAAGGGAAATCtttttttGGCGGTGAAACAATCG 503
| || | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 TCGAGGATGCGTTTATTTCTCTAAGCAAAGGGAAATCTTTTTTCGGCGGTGAAACAATCG 478
Query 504 GGTTCATAGACATTTGCCTTGGAAGCTTTTTAGTTCTCTTAAAAGCTAGAGAGAAGCTTA 563
||||||| |||||||| || ||||||||||||||| |||| ||||||||||| |||||||
Sbjct 479 GGTTCATGGACATTTGTCTCGGAAGCTTTTTAGTTTTCTTTAAAGCTAGAGAAAAGCTTA 538
Query 564 AAAACGAAAAGATTTTAGACGAATTAAAAACTCCTTCTCTTTATAGATGGGCCAACCAGT 623
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 AAAAAGAAAAGATTTTAGACGAATTAAAAACTCCTTCTCTTTATAGATGGGCTAACCAGT 598
Query 624 TTTTGTCAAATGAAATGGTGAAGAATGTGGTGCCGGATATTGATAAAGTCGCCAAGTTTA 683
|||||||| |||||| ||||| ||||||||||||||| || |||| ||| ||||||||||
Sbjct 599 TTTTGTCAGATGAAACGGTGATGAATGTGGTGCCGGAGATAGATAGAGTTGCCAAGTTTA 658
Query 684 TAGAAGAGTTTGAGGATAGAGCTCAAT 710
||| ||| ||||||||||||||||||
Sbjct 659 TAGTAGAACTTGAGGATAGAGCTCAAT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32023250280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5