BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59675.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925116 jgi|Araly1|925116|scaffold_200677.1 449 7e-126
Ahg924343 jgi|Araly1|924343|scaffold_105624.1 211 4e-54
> Ahg925116 jgi|Araly1|925116|scaffold_200677.1
Length=1150
Score = 449 bits (243), Expect = 7e-126
Identities = 293/318 (92%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 5 CCTCACGTGATAATGATACATCTCAATCAGACCATGTTCCTTTGGATTTAACCATTGAGA 64
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |||
Sbjct 112 CCTCACGTGATAATGATACATCTCAATCAGAACATATTCCTCTGGATTTAACCATCCAGA 171
Query 65 TACTCTCAAGACTTCCTGCGAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTCTGGT 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 172 TACTCTCAAGACTTCCTGCAAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTTTGGT 231
Query 125 CGGCCAACACCACCAGTCAAAATTTCATCAACTCCTTTGCGACTGGGTCCTTGGCATCGC 184
| ||| |||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 232 CCACCATCACCACTAGTCAATATTTCATCAACTCCTTTGCGACTCGGTCCTTGGCATCGG 291
Query 185 GGCCTTCTGTACTGCTAACCGTCCGAAAAGGTGACATTCTGTTCGTTTTCTCGTATCCCG 244
||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 292 GGCCTTCTGGACTGCTAACCGTCCAAAAAGGCGACATTCTGTTCGTTTTCTCGTCTCCCC 351
Query 245 TAGACAAGAATAGTTCCGATGGTCAATTTACTTGTGTGGGAAGTTATCAATTGACAAACC 304
|| ||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||| |
Sbjct 352 TACACAAGAATAGTCCCGACGGTCAATTTTCTTGTGTGGGAAGTTATCAATTTACAAAAC 411
Query 305 CTAATTTTGGTAACCTCT 322
||||||||||||||||||
Sbjct 412 CTAATTTTGGTAACCTCT 429
Score = 152 bits (82), Expect = 2e-36
Identities = 105/116 (91%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 381 GAGAAACAGTATTAGAGAAGTCGAAACTGTGGGTGATGAAGTTAGACTT-TCTGACAAGT 439
|||||||||||||||||||||||||||||| ||||||||| |||||||| | ||| |||
Sbjct 1016 GAGAAACAGTATTAGAGAAGTCGAAACTGTCGGTGATGAATTTAGACTTGT-TGAGGAGT 1074
Query 440 ATATGTACACCATGAATGTTTACCCAAATCACATCGAAAGTCTTGTGTCTTTGTGA 495
|||||||||||| |||||||||||| ||| ||||||| ||||| ||||||||||||
Sbjct 1075 ATATGTACACCAGGAATGTTTACCCTAATAACATCGAGAGTCTCGTGTCTTTGTGA 1130
> Ahg924343 jgi|Araly1|924343|scaffold_105624.1
Length=1178
Score = 211 bits (114), Expect = 4e-54
Identities = 177/207 (86%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 64 ATACTCTCAAGACTTCCTGCGAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTCTGG 123
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 67 ATACTCTCAAGACTTCCTGCAAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTTTGG 126
Query 124 TCGGCCAACACCACCAGTCAAA-ATTTCATCAACTCCTTTGCGACTGGGTCCTTGGCATC 182
||| ||| ||||| ||| ||| ||||||||| ||| || || ||| ||||||| |||||
Sbjct 127 TCGACCATTACCACAAGT-AAAGATTTCATCACCTCGTTCGCAACTCGGTCCTTAGCATC 185
Query 183 GCGGCCTTCTGTACTGCTAACCGTCCGA-AAAGGTGACATTCTGTTCGTTTTCTCGTATC 241
|| ||| || |||||| |||||||| | ||||| || ||| ||||||||||||||| ||
Sbjct 186 GCAGCCATCGGTACTGGTAACCGTCT-ATAAAGGCGAAATTTTGTTCGTTTTCTCGTCTC 244
Query 242 CCGTAGACAAGAA-TAGTTCCGATGGT 267
|| || |||| || |||||| ||||||
Sbjct 245 CCCTAAACAA-AAGTAGTTCTGATGGT 270
Score = 91.6 bits (49), Expect = 5e-18
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 441 TATGTACACCATGAATGTTTACCCAAATCACATCGAAAGTCTTGTGTCTTTGTGA 495
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1104 TATGTACACCATGAATGTTTACCCAAATCACATCCAGAGTCTTGTGTCTTTGTGA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5