BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59680.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907520 jgi|Araly1|907520|Al_scaffold_0002_601 523 6e-148
Ahg946695 jgi|Araly1|946695|scaffold_702924.1 111 6e-24
Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1 104 1e-21
Ahg342633 jgi|Araly1|342633|fgenesh1_pg.C_scaffold_3002396 82.4 5e-15
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 80.5 2e-14
> Ahg907520 jgi|Araly1|907520|Al_scaffold_0002_601
Length=957
Score = 523 bits (283), Expect = 6e-148
Identities = 404/459 (88%), Gaps = 22/459 (5%)
Strand=Plus/Plus
Query 350 CAGA-AAGATTTGGACCGCATCTTCCTCTGCCGGTTCACTCTTATG---AT---GA---- 398
|||| || ||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 455 CAGAGAA-ATTTGGACCGCATCTTCCTCTGCCGTTTCACTCTTATGATAATGAGGATGGG 513
Query 399 -C-GTGACTCTATCTTGTGTCAGACAAGAGCAGCTTGCTTTGTTATATGGGAACAACGAG 456
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 514 GCTGTGACTCTATCTTGTGTCAGACAAGAGCAACTTGCTTTGTTATATCAGAACAGCGAG 573
Query 457 ACAGATGATTCATTAGAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGG 516
|||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 574 ACAGTTGAGTCATTAGAGATTTGGATTACGAATCAGATTGATCCCAATGCGGTGTCGTGG 633
Query 517 AGCATATTTTTGAAAGTGGATATCAAACCGCTTATTGGTTTTCCAAAAGACTTCGATCCT 576
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |||
Sbjct 634 AGCATATTTTTGAAAGTGGATATCGAACCGCTTATTGGTTTTCCAAAAAACTTTGAACCT 693
Query 577 GGGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTTACGATTTGGACGGACAT 636
| |||||||||||||||||||||||||||||||| |||||||| ||| | ||| | ||
Sbjct 694 GCGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGCTGTGGTTTCCGAA--G-ACGAATAT 750
Query 637 TTATATAGTACCAA-GAAGAACTGT-GCCTACCAAAGGCTTTACATCATTGGAGAAGATG 694
|||||| |||||| || || |||| || ||||||| ||||||||||||||||||||||
Sbjct 751 TTATATTTTACCAATGA-GACCTGTCGC-TACCAAACACTTTACATCATTGGAGAAGATG 808
Query 695 GATACTTCACATCTGTAAAAATCAAATGCTCTGACTCACCTGAATTCTCTGCTTATGCTC 754
||||||||| |||| | ||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 809 GATACTTCAAATCTTTCAAAATTAGATGCTCTGACTCACCTGAATTCTCTTCTTATGCTC 868
Query 755 CAAGTTTAGTG-ACATACAAACCAACCAACTACGCAAAA 792
| ||||||||| |||||||||||||||||| | ||||||
Sbjct 869 CCAGTTTAGTGCACATACAAACCAACCAACAAGGCAAAA 907
Score = 252 bits (136), Expect = 3e-66
Identities = 155/164 (95%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGATCTTTCTGTGGATTTGGTAGGGGAGATACTCTCTAGGGTTCCGCTAACATCT 60
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 10 ATGTCAGATCTTGCTGTGGATTTGATAGGGGAGATACTCTCTAGGGTTCCGCTAACATCT 69
Query 61 CTGAGCGCAGTGCGATGTACTTGCAAATCGTGGAACA-CTTTATCTAAGCATCAGATTTT 119
||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 70 CTGAGCGCAGTACGATGTACTTGCAAATCGTGGAA-AGCTTTATCTAAGCATCAGATTGT 128
Query 120 TGGTAAAGCAGAATTAGCAGCGACTAAGCAGTTTTTGGGGTTCA 163
||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 129 TGGTAAAGCAGAAGTAGCAGCAACAAAGCAGTTTTTGGGGTTCA 172
> Ahg946695 jgi|Araly1|946695|scaffold_702924.1
Length=1201
Score = 111 bits (60), Expect = 6e-24
Identities = 190/251 (76%), Gaps = 16/251 (6%)
Strand=Plus/Plus
Query 472 GAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCATA-TTTTTGAA 530
||||||||| |||| || ||||||||||||| |||||||||||||||| | |||||||
Sbjct 834 GAGATTTGGGTTACGGATAAGATTGATCCCAACGCAGTGTCGTGGAGCA-AGTTTTTGAT 892
Query 531 AGTGGATATCAAACCGCTTATTGGTTTTCCAAAAGACTTC--GATCCTGGGAGCTTCTTC 588
||||| || | ||| || | ||||||| || | || || ||| ||||||| |
Sbjct 893 GGTGGAAATGAGACCACTCACTGGTTTT-CAGTTCA-ATCAAGAAGCTGTGAGCTTCGCC 950
Query 589 ATTGACGAAGAGAAGAAAGTCGTTGTGGTTTACGATTTGGACGGACATTTATA-TAGTAC 647
||||| || ||||||||||| ||| |||||| |||| || | || || | | ||
Sbjct 951 ATTGATGAGGAGAAGAAAGTTGTTTTGGTTTTCGATCAAGA-AG-TATATA-ACCCG-AC 1006
Query 648 CAAGAAGAACTGTGCCTACCAAA-GGCTTTACATCATTGGAGAAGATGGATACTTCACAT 706
|||| | | | | | | ||||| | |||||||||||||||||||||||||||||| ||
Sbjct 1007 CAAG-ACCATTCT-CAT-CCAAACAG-TTTACATCATTGGAGAAGATGGATACTTCAAAT 1062
Query 707 CTGTAAAAATC 717
|| | ||||||
Sbjct 1063 CTATGAAAATC 1073
> Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1
Length=1119
Score = 104 bits (56), Expect = 1e-21
Identities = 214/286 (75%), Gaps = 28/286 (10%)
Strand=Plus/Plus
Query 351 AGAAAGATTTGGACCGCATCTTCCTCTGCCGGTTCACTCTTATGAT---G--AC-GTGAC 404
|||||| |||||||||| ||||| ||||||| ||| |||||||||| | || |||||
Sbjct 687 AGAAAGGTTTGGACCGCGTCTTCGTCTGCCGTTTCGCTCTTATGATGAAGACACTGTGAC 746
Query 405 TCTATCTTGTGTCAGACAAGAGCAGCTTGCTTTGTTATATGGGAACAACGAGACAGATGA 464
||| ||| |||| ||| ||||||| |||||| |||||| | || || || || |
Sbjct 747 TCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTAT-T----TCAGCGTGA-GGACAA 800
Query 465 -TT-CA-TTAGAGATTTGGATTACAAATCAGATTGATCC-CAATGCAGTGTCGTGGAGC- 519
|| || || ||||||||| |||| | | ||||||| || || | ||||| ||||||
Sbjct 801 CTTACATTTGGAGATTTGGGTTACGACTAAGATTGAGCCTGAA-GTGGTGTCATGGAGCA 859
Query 520 A--TATTTTTGA-AAGTGGATATCAAACCGCTTATTGGTTTTCCAA--AAGACTT-CGAT 573
| | ||||| | ||||||||| |||| || | || |||| ||| || || | |
Sbjct 860 AGTTGTTTTT-AGCAGTGGATATGGAACCACTCACTGATTTT-CAATTTGGAGTTAC-A- 915
Query 574 CCTGGGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTT 619
||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 916 GGAGGGAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCTGTAGTTT 961
> Ahg342633 jgi|Araly1|342633|fgenesh1_pg.C_scaffold_3002396
Length=1092
Score = 82.4 bits (44), Expect = 5e-15
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 472 GAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCATATT-TTTGAA 530
||||| |||||||||| | |||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 808 GAGATATGGATTACAACTAAGATTGATCCCAATGCAGTGTCGTGGAGCAAATTCTTT-AA 866
Query 531 AGT 533
|||
Sbjct 867 AGT 869
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 80.5 bits (43), Expect = 2e-14
Identities = 211/287 (74%), Gaps = 31/287 (11%)
Strand=Plus/Plus
Query 350 CAGAAAGATTTGGACCGCA-TCTTCCTCTGCCGGTTCACTC-TTATGATGACGTGACTCT 407
|||| |||||||||| | | |||||||||||| ||| | | |||| || | ||||||
Sbjct 1301 CAGAGAGATTTGGACAG-ATTCTTCCTCTGCC-GTTTAAACATTAT-AT-TTG-GACTCT 1355
Query 408 ATCTTGTGTCAGACAAGAG---C-AGC--TTGCTTTGTTAT-ATGGGAACAACGAGACAG 460
||||||||||| | ||||| | || | || |||||| |||| | || | |||
Sbjct 1356 ATCTTGTGTCAAAGAAGAGAAACTCGCAGTCGCGGTGTTATGTTGGG-A-AA--ATACAT 1411
Query 461 ATGATTCATTAGAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCA 520
||| | | ||||||| ||||| |||| | |||||||||| ||||| | |||||||||||
Sbjct 1412 ATG--TGA-TAGAGATATGGATGACAATTAAGATTGATCCTAATGCCGCGTCGTGGAGCA 1468
Query 521 TATTTTTGAA-AGTGGATATCAAACCGCTTATTGGT-TT-TCCAAAAGACTT-C-GATCC 575
||| || || ||| |||| ||||| | |||||| || | | || | |||
Sbjct 1469 AATTCTT-AAGAGTTGATAGGAAACCACCCATTGGTCTTGGCTTTGTG-TTTGCTAATCG 1526
Query 576 TG--G-GAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTT 619
|| | || |||||||||||||||||||||||||||| |||||||
Sbjct 1527 TGATGACAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCCGTGGTTT 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5