BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G59690.1

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924343 jgi|Araly1|924343|scaffold_105624.1                        337    5e-92
  Ahg925113 jgi|Araly1|925113|scaffold_200674.1                        292    1e-78


> Ahg924343 jgi|Araly1|924343|scaffold_105624.1
Length=1178

 Score =  337 bits (182),  Expect = 5e-92
 Identities = 262/301 (87%), Gaps = 4/301 (1%)
 Strand=Plus/Plus

Query  135   GATAGACACGAATGGACGCATAATCGC-GT-TTTTGACTCTTTCTGAAATGGA-CCTAAT  191
             ||||||||||||||||||||||| | |  | ||||| ||||| |||||||||| || |||
Sbjct  859   GATAGACACGAATGGACGCATAAACACTTTGTTTTGCCTCTTGCTGAAATGGAGCC-AAT  917

Query  192   ACGGAAAGAAAAGCCAAGCTTTTATGGTGTTAGTGATGCTGGTGAGATTGTTTTTGCACC  251
              ||||  ||||||| | |||| |||||||||||| ||| ||||||| || ||||| ||| 
Sbjct  918   GCGGAGCGAAAAGCTATGCTTCTATGGTGTTAGTTATGTTGGTGAGCTTATTTTTACACA  977

Query  252   ATCGATATTGTTTGAATCGTTTTATCTACTATATTTTGATCCGAGGAGAAACAGTATTAG  311
             |  ||  ||||||| |||||||||| | |||||||| |||||||||||||||||||||||
Sbjct  978   AAGGAGGTTGTTTGGATCGTTTTATATTCTATATTTCGATCCGAGGAGAAACAGTATTAG  1037

Query  312   AGAAGTCTCGGTTGAAGGAATTGTGGGTGATGAATTTAGAAGCCGCTATGGATTTGTTAA  371
             ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1038  AGATGTCTTGTTTGAAGGAATTGTGGGTGATGAATTTAGAAGCCGCTATGGATTTGGTAA  1097

Query  372   AGACTATATGTACAACATGAAGGTTTACCCAAATCACATCAAGAGTCTCGTGTTTTTGTG  431
             ||||| |||||||| |||||| |||||||||||||||||| ||||||| |||| ||||||
Sbjct  1098  AGACTTTATGTACACCATGAATGTTTACCCAAATCACATCCAGAGTCTTGTGTCTTTGTG  1157

Query  432   A  432
             |
Sbjct  1158  A  1158


> Ahg925113 jgi|Araly1|925113|scaffold_200674.1
Length=739

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 211/236 (89%), Gaps = 6/236 (3%)
 Strand=Plus/Plus

Query  135  GATAGACACGAATGGACGCATAATCGCGTT--TTTGACTCTTTCTGAAATGGACCTAATA  192
            |||||||||||||||||||||||| || ||  |||| |||||||||||||||||| ||||
Sbjct  501  GATAGACACGAATGGACGCATAATTGCTTTGATTTGCCTCTTTCTGAAATGGACCCAATA  560

Query  193  CGGAAAG-AAA-AGCCAAGCTTTTATGGTGTTAGTGATGCTGGTGAGATTGTTTTTGCAC  250
            | | | | ||| ||||| |||||| |||||||||| ||||||||||| || |||||||||
Sbjct  561  C-G-ACGCAAAGAGCCACGCTTTTGTGGTGTTAGTAATGCTGGTGAGCTTTTTTTTGCAC  618

Query  251  CATCGATATTGTTTGAATCGTTTTATCTACTATATTTTGATCCGAGGAGAAACAGTATTA  310
            ||| ||| |||| |||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct  619  CATGGATGTTGTCTGAATCGTTTAATATTCTATATTTCGATCCGAGGAGAAACAGTATTA  678

Query  311  GAGAAGTCTCGGTTGAAGGAATTGTGGGTGATGAATTTAGAAGCCGCTATGGATTT  366
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct  679  GAGAAGTCTCGTTTGAAGGAATTGTGGGTGATGAATTTTGAAGCCGCTATGGATTT  734



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15567480312


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5