BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59710.1
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925110 jgi|Araly1|925110|scaffold_200671.1 1472 0.0
Ahg475343 jgi|Araly1|475343|fgenesh2_kg.2__473__AT1G59720.1 547 8e-155
> Ahg925110 jgi|Araly1|925110|scaffold_200671.1
Length=951
Score = 1472 bits (797), Expect = 0.0
Identities = 900/949 (95%), Gaps = 9/949 (1%)
Strand=Plus/Plus
Query 240 CATCTCTTTCTCTAACAATGGAGATTTTTCAAAAGGCCAAAGCCGTTCGTCTACGGAGCC 299
||||||||||||||||||||||||||||||| ||||| ||||| |||||| | || ||||
Sbjct 8 CATCTCTTTCTCTAACAATGGAGATTTTTCAGAAGGCGAAAGCGGTTCGTTTGCGTAGCC 67
Query 300 ATCACGACAAGTACCTAGTCGCCGATGAAGACGAAGAATCTGTAACTCAAGAACGTAACG 359
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 68 ACCACGACAAGTACCTAGTCGCCGAAGAAGACGAAGAATCTGTAACTCAAGAACGTAACG 127
Query 360 GCTCAGCAGGTGCAGCCAAATGGACCGTTGAGATAATCCCAGGCTCAACAAATCTCATCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GCTCAGCAGGTGCAGCCAAATGGACCGTTGAGATAATCCCAGGCTCAACAAATCTCATCC 187
Query 420 GTCTCAAAAGCGCTTATGGCAAATACTTAACAGCGTCTAACAAACCGTTTCTTCTTGGAG 479
|||||||||||||||| || ||||||||||| ||||| || |||||||||||||||||||
Sbjct 188 GTCTCAAAAGCGCTTACGGAAAATACTTAACGGCGTCAAATAAACCGTTTCTTCTTGGAG 247
Query 480 CCACCGGaaaaaaaGTTCTACAGACTAAACCTAGTCGTCTTGACTCGTCTTTAGCTTGGG 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 248 CCACCGGAAAAAAAGTTCTACAGACTAATCCTAGTCGTCTTGACTCGTCTTTAGCTTGGG 307
Query 540 AACCGATTAGAGATTCTGCTTTGGTTAAGCTCAAGACTCGTTATGGTAACTTCCTTCGTG 599
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 308 AACCGATTAGAGACTCTGCTTTGGTTAAGCTTAAGACTCGTTATGGTCACTTCCTTCGTG 367
Query 600 GTAACGGTGGTTTACCTCCCTGGAGAAACTCTGTTACTCATGATATTCCTCATAGATCGG 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTAACGGTGGTTTACCTCCTTGGAGAAACTCTGTTACTCATGATATTCCTCATAGATCGG 427
Query 660 CCACTCAAGAATGGGTACTTTGGCATATAGATGTCGTTGAGATCCTCCCTGCAAAC-GCA 718
| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 428 CGACTCAAGAATGGGTTCTTTGGCATGTTGATGTCGTTGAGATCCTCCCTGCAAACTGCA 487
Query 719 AACTCCGATCACCACCA-C--CAGCACCTGCAGCTGCAGCAACCTCCGTCGCCGCTTCAT 775
| || ||||||| || | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 488 A--TC--ATCACCAGCAGCAACAGCAGCTGCAGCTGCAGCTACCTCCGTCGCCGCTTCAT 543
Query 776 CATTCTGATTCTCTTGATTTCACACCTGGATCTCCTTCCAGATCTGACCGTTTCTTTAGA 835
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 544 CATTCTGATTCTCTTGATTTCACACCTGGATCTCCTTCCAGATCTAACCGTTTCTTTAGA 603
Query 836 CAAGAGTCAACGGATTCACTGGCGGTTGGATCGCCGCCGAAATCGGAAGGGAGAGTGATA 895
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CAAGAGTCAACGGATTCAGTGGCGGTTGGATCGCCGCCGAAATCGGAAGGGAGAGTGATA 663
Query 896 TACTACCATGTGGCGGATGATGATGATGATGTTGAAGATGACTCTGTTGAGGTAAGTTCG 955
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 664 TACTTCCATGTGGCGGATGATGATGGCGATGTTGAAGATGATTCTGTTGAGGTAAGTTCG 723
Query 956 TTTACTTTCAAAGGAAATGGTGTTGAAGAGCTGACTATGAGATTGAAAGAAGAGAGCAAT 1015
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTTACTTTCAAAGGCAATGGTGTTGAAGAGCTGACTATGAGATTGAAAGAAGAGAGCAAT 783
Query 1016 GTCGAAGACGTTATCGTTTGTACTCGTAGTCCGTTGAACGGGAAGCTTTTCCCATTGCGT 1075
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 784 GTCGAAGATGTTATCGTTTGTACTCGTAGTCCGTTGAACGGGAAGCTTTTCCCGTTGCGT 843
Query 1076 CTTCAACTTCCACCTAACAATGCTGACATGACTGTTGTCTTAGTGCCAAAATCATCAAAA 1135
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 844 CTTCAACTCCCACCTAACAATGCAGACATGACTGTCGTCTTAGTGCCAAAATCATCAAAA 903
Query 1136 ATAGCAGAAAAGTTCATCAAGTGAGATCTTTCTTTTGAAGCTGAGCTGT 1184
||||||||| |||| |||||||||||||||| ||| |||||||||||||
Sbjct 904 ATAGCAGAAGAGTTTATCAAGTGAGATCTTTGTTT-GAAGCTGAGCTGT 951
> Ahg475343 jgi|Araly1|475343|fgenesh2_kg.2__473__AT1G59720.1
Length=1972
Score = 547 bits (296), Expect = 8e-155
Identities = 344/367 (94%), Gaps = 4/367 (1%)
Strand=Plus/Minus
Query 1242 CTTAGAGATACTGCTTGATTACCAAACTTATGATTTAGAGATACCATTCTTTCCCTTTTG 1301
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1972 CTTACAGATACTGCTTGATTACCAAACTTATGATTTAGATATACCATTCTTTCCCTTTTG 1913
Query 1302 TCCAACTCTAATGCTCAATCTCTTTCAATTACTGCGACTAGttttttttttGCTACCAGT 1361
||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1912 TCCCACTCTAATGCTCAATCTCTTTCAATTACTGCGACTAG----GTTTTAGCTACCAGT 1857
Query 1362 AGTCTAAACAAGAGCAGGATCCATCTTTGAAGTGATGGAAACGAACACGATCTCTCACGA 1421
|||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||
Sbjct 1856 AGTCTAAACAAGAGCAGGATCCGTCTTTGAAATGATGGAACCGAACACGGTCTCTCACGA 1797
Query 1422 TGATCTCAGTGTTGAAGACTTTTGAGATCAGTTTAGTAACCTCGTGGCAATCGTTGCAGA 1481
||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||
Sbjct 1796 TGATCTCAGTGTTGAAGACTTTTGATATCAGTTTAGTAACTTCATGGCAATCGCTGCAGA 1737
Query 1482 CACGTAGATTCTTGAATATACGGATTGGAGTCTGAGGTGGTAAGTTTATCAGACCAAAAG 1541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1736 CACGTAGATTCTTGAATATACGGATTGGAGTCTGAGGTGGTAAGCTTATCAGACCAAAAG 1677
Query 1542 CAATGGCAAGTCTTTCACTGTGCAGCCTAAGGGAATACTCTTTGCTACCATCATTGGTGG 1601
||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1676 CAATGGCAAGTCTCTCACTGTGCAGCCGGAGGGAATACTCTTTGCTACCGTCATTGGTGG 1617
Query 1602 CATCCAC 1608
||||||
Sbjct 1616 AATCCAC 1610
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1641 CAATTGATCTTAGCCTGTCGTCGATCAC 1668
||||||||||||||||||||||||||||
Sbjct 1610 CAATTGATCTTAGCCTGTCGTCGATCAC 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62620362780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5