BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59720.1
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475343 jgi|Araly1|475343|fgenesh2_kg.2__473__AT1G59720.1 2486 0.0
Ahg471011 jgi|Araly1|471011|fgenesh2_kg.1__965__AT1G09220.1 56.5 7e-07
> Ahg475343 jgi|Araly1|475343|fgenesh2_kg.2__473__AT1G59720.1
Length=1972
Score = 2486 bits (1346), Expect = 0.0
Identities = 1526/1613 (95%), Gaps = 11/1613 (1%)
Strand=Plus/Plus
Query 23 TTTCACCTCCAACAACTATAACTTATTACCATCCAATGTCTATCGGTCTTCTGGTCCACC 82
|||| ||| ||||||||| ||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 4 TTTCCCCTACAACAACTA-AACTTATTATCATCCAATGTCTATCAGTCTTCTGCTCCACC 62
Query 83 CATTATCTCCTCATATCCCACCGGC-AAGTTCTCCCTCAGCCTCCACCGCCGGTAACCAT 141
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 63 CATTATCTCCTCATATCCAACCGGCTAA-TTCTCCCTCAGCCTCCACCGCCGGTAACCAT 121
Query 142 CACCAACGTATTTTCTCCTTAGCAGAAACATGTTCAGACATGTCTCAGCTCAAGCAACTT 201
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CACCGACGTATTCTCTCCTTAGCAGAAACATGTTCAGACATGTCTCAGCTCAAGCAACTC 181
Query 202 CACGCCTTCACTCTCCGTACTACTTACCCTGAGGAACCCGCAACTCTGTTTCTCTACGGC 261
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182 CACGCCTTCACTCTCCGTACTACTTACCCTGATGAACCCGCAACTCTGTTTCTCTACGGC 241
Query 262 AAAATCCTCCAGCTCTCTTCCTCCTTCTCCGACGTCAATTACGCGTTCCGGGTTTTCGAC 321
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAAATCCTCCAGCTATCTTCCTCCTTCTCCGACGTCAATTACGCGTTCCGGGTTTTCGAC 301
Query 322 TCCATCGAAAACCATAGCT-CTTTCATGTGGAACACTCTTATAAGAGCATGTGCTCATGA 380
||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 302 TCCATTGAAAACCATAGCTCCTTT-ATGTGGAACACTCTTATAAGAGCATGTGCTCATGA 360
Query 381 TGTTTCAAGGAAAGAAGAAGCCTTTATGCTTTACCGGAAAATGTTAGAGAGAGGTGAATC 440
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 361 TGTTTCAAGGAAAGAAGAAGCCTTTCTGCTGTACCGGAAAATGTTAGAGAGAGGTGAATC 420
Query 441 TTCACCGGATAAGCATACGTTTCCGTTTGTATTGAAAGCTTGCGCTTATATATTCGGGTT 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 GGCACCGGATAAGCATACGTTTCCGTTTGTTTTGAAAGCTTGCGCTTATATATTCGGGTT 480
Query 501 CTCCGAAGGGAAGCAAGTTCATTGTCAGATTGTGAAACATGGGTTTGGTGGAGATGTGTA 560
|| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 481 ATCGGAAGGGAAGCAAGTTCATTGTCAGGTTGTCAAACATGGGTTTAGTGGAGATGTGTA 540
Query 561 TGTTAATAATGGTTTGATTCATTTGTATGGGTCTTGTGGGTGTTTGGATTTAGCACGGAA 620
||| || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 541 TGTGAACAATGGTTTGATTCATTTTTATGGATCTTGTGGATGTTTGGATTTAGCACGGAA 600
Query 621 AGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAATTCGATGATCGATGCTCT 680
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 AGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAATTCGATGATTGATGCTCT 660
Query 681 GGTTCGGTTTGGGGAGTATGATTCTGCGTTACAACTGTTTAGAGAGATGCAGAGATCGTT 740
||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct 661 GGTTCGGGTTGGGGAGTATGATTCTGCGTTACAATTGTTTAGAGATATGCAGAAATCGTT 720
Query 741 TGAACCAGATGGTTATACGATGCAGAGTGTTTTGAGTGCGTGTGCTGGTCTTGGATCTTT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGAACCAGATGGTTATACGATGCAGAGTGTTTTGAGTGCGTGTGCTGGTCTTGGATCTTT 780
Query 801 GTCACTAGGTACTTGGGCACATGCGTTTCTGCTGCGAAAATGTGATGTCGATGTTGCTAT 860
|||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 781 GTCATTAGGTACTTGGGCACATGTGTTTCTGTTGCGAAATTGTGATGTCGATGTTGCTAT 840
Query 861 GGATGTTTTGGTTAAGAACTCGTTGATCGAAATGTATTGCAAATGCGGGTCGTTGAGAAT 920
||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 GGATGTTCTGATTAAGAACTCGTTGATTGAAATGTATTGCAAATGCGGGTCGTTGAGAAT 900
Query 921 GGCTGAGCAAGTGTTTCAGGGGATGCAAAAACGTGACTTAGCTTCATGGAATGCAATGAT 980
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 901 GGCTGAGCAAGTGTTTCAGGGAATGCGAAAACGTGACTTAGCTTCATGGAACGCAATGAT 960
Query 981 TCTAGGGTTTGCTACACATGGAAGAGCTGAGGAAGCCATGAATTTCTTCGACCGTATGGT 1040
|||||||||||||||||| |||| |||||||||||| ||||||| ||||||| |||||||
Sbjct 961 TCTAGGGTTTGCTACACACGGAAAAGCTGAGGAAGCTATGAATTGCTTCGACTGTATGGT 1020
Query 1041 GGATAA-AA-G-AGAGAATGTTAGACCGAACTCAGTCACGTTTGTTGGCTTGCTCATCGC 1097
|| || || | | ||||||||| ||||||||| ||||||||||||| | | ||||| ||
Sbjct 1021 -GA-AAGAAGGCA-AGAATGTTAAACCGAACTCTGTCACGTTTGTTGCCCTCCTCATTGC 1077
Query 1098 CTGCAACCACCGAGGCTTTGTAAACAAAGGGCGCCAGTATTTTGACATGATGGTCAGAGA 1157
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTGCAACCACCGAGGCATGGTAAACAAAGGGCGCCAGTATTTTGACATGATGGTCAGAGA 1137
Query 1158 TTATTGCATCGAACCTGCGTTGGAGCATTACGGTTGCATCGTCGACCTTATTGCTCGTGC 1217
||| | ||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 1138 ATATGGTATCGAACCTGCGTTGGAGCATTATGGTTGTATCATCGACCTTGTTGCTCGTGC 1197
Query 1218 AGGCTACATTACTGAAGCTATTGACATGGTAATGAGCATGCCAATGAAACCAGATGCAGT 1277
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1198 AGGCTACATTACTGAAGCTATTGACATGGTGATGAGCATGCCGATGAAACCAGATGCAGT 1257
Query 1278 GATATGGAGAAGTCTCCTTGATGCTTGTTGCAAAAAGGGTGCTAGTGTGGAGCTAAGTGA 1337
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1258 GATATGGAGAAGTCTCCTTGATGCTTGTTGCAAAAAAGGCGCTAGTGTGGAGCTAAGTGA 1317
Query 1338 AGAAATTGCTAGAAATATTATTGGAACAAAGGAAGATAACGAAAGCTCCAATGGTAACTG 1397
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||
Sbjct 1318 AGAAATTGCTAGAAATATTATCGGAACAATGGAAGATAACCAAAGCTCCAATAGTAACTG 1377
Query 1398 CAGTGGTGCATATGTACTGTTGTCTAGAGTTTATGCATCAGCTAGCCGCTGGAACGATGT 1457
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1378 CAGTGGCGCATATGTACTGTTGTCTAGAGTTTATGCATCAGCTAGCCGGTGGAACGATGT 1437
Query 1458 TGGAATCGTTAGAAAACTAATGAGTGAACATGGAATTAGAAAAGAGCCTGGATGCAGTTC 1517
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1438 TGGAATCGTCAGAAAACTAATGAGTGACCATGGAATTAGAAAAGAGCCTGGATGCAGTTC 1497
Query 1518 TATTGAGATAAATGGCATCTCCCACGAGTTTTTCGCAGGAGACACGTCGCATCCTCAGAC 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TATTGAGATAAATGGCATCTCCCACGAGTTTTTCGCAGGAGACACGTCGCATCCTCAGAC 1557
Query 1578 CAAACAGATATACCAACAGTTGAAGGTGATCGACGACAGGCTAAGATCAATTG 1630
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1558 AAAACAGATATACCAACAGTTGAAAGTGATCGACGACAGGCTAAGATCAATTG 1610
Score = 547 bits (296), Expect = 1e-154
Identities = 344/367 (94%), Gaps = 4/367 (1%)
Strand=Plus/Plus
Query 1663 GTGGATGCCACCAATGATGGTAGCAAAGAGTATTCCCTTAGGCTGCACAGTGAAAGACTT 1722
|||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1610 GTGGATTCCACCAATGACGGTAGCAAAGAGTATTCCCTCCGGCTGCACAGTGAGAGACTT 1669
Query 1723 GCCATTGCTTTTGGTCTGATAAACTTACCACCTCAGACTCCAATCCGTATATTCAAGAAT 1782
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1670 GCCATTGCTTTTGGTCTGATAAGCTTACCACCTCAGACTCCAATCCGTATATTCAAGAAT 1729
Query 1783 CTACGTGTCTGCAACGATTGCCACGAGGTTACTAAACTGATCTCAAAAGTCTTCAACACT 1842
||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1730 CTACGTGTCTGCAGCGATTGCCATGAAGTTACTAAACTGATATCAAAAGTCTTCAACACT 1789
Query 1843 GAGATCATCGTGAGAGATCGTGTTCGTTTCCATCACTTCAAAGATGGATCCTGCTCTTGT 1902
||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1790 GAGATCATCGTGAGAGACCGTGTTCGGTTCCATCATTTCAAAGACGGATCCTGCTCTTGT 1849
Query 1903 TTAGACTACTGGTAGCaaaaaaaaaaCTAGTCGCAGTAATTGAAAGAGATTGAGCATTAG 1962
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1850 TTAGACTACTGGTAGCTAAAAC----CTAGTCGCAGTAATTGAAAGAGATTGAGCATTAG 1905
Query 1963 AGTTGGACAAAAGGGAAAGAATGGTATCTCTAAATCATAAGTTTGGTAATCAAGCAGTAT 2022
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1906 AGTGGGACAAAAGGGAAAGAATGGTATATCTAAATCATAAGTTTGGTAATCAAGCAGTAT 1965
Query 2023 CTCTAAG 2029
|| ||||
Sbjct 1966 CTGTAAG 1972
> Ahg471011 jgi|Araly1|471011|fgenesh2_kg.1__965__AT1G09220.1
Length=1133
Score = 56.5 bits (30), Expect = 7e-07
Identities = 47/55 (85%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 619 AAAGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAAT-TCGATGATC 672
|||||||||||||||||||||||||||| || || | |||||| | |||||||
Sbjct 37 AAAGTGTTTGATGAAATGCCTGAGAGAAATCCGGTAACATGGAATGT-GATGATC 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76447121715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5