BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G59722.1

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907515 jgi|Araly1|907515|Al_scaffold_0002_596                     418    2e-116
  Ahg338390 jgi|Araly1|338390|fgenesh1_pg.C_scaffold_2000489           248    3e-65 


> Ahg907515 jgi|Araly1|907515|Al_scaffold_0002_596
Length=846

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 355/413 (86%), Gaps = 25/413 (6%)
 Strand=Plus/Plus

Query  12   CTTGAAGAAGCCCAAGCCGAAAGAAACGGAAGATG-ATGATCATCTTAGGATTTCAGACA  70
            ||| |||||||||||||| |||||||||||||| | |||||||||||||| |||||||||
Sbjct  406  CTT-AAGAAGCCCAAGCCAAAAGAAACGGAAGA-GAATGATCATCTTAGGGTTTCAGACA  463

Query  71   ACAACACCACCATCTCAAACCGC-AAGAT-GGTT-T--C-AAC-T-G-----AAGAAACT  117
            ||| | ||| ||||||||||||| ||| | |||| |  |   | | |     | |||| |
Sbjct  464  ACAGCGCCATCATCTCAAACCGCAAAGTTGGGTTATGCCTTCCGTGGCTCCCACGAAAGT  523

Query  118  GCTTCCAATTGGGGATCTTCTGCTACTTCCAAGGTTTCTAAGGATGTTGC-AG-CCGGAT  175
            | |||||||| || |||||||||||||||||||||||||||||||||||  |  ||||||
Sbjct  524  G-TTCCAATTTGGAATCTTCTGCTACTTCCAAGGTTTCTAAGGATGTTGTTATTCCGGAT  582

Query  176  T-TTCTCTCATGGATCCTTTCACGTTAGGGTTTTCCGT-AGGCGATTACTTCCCAGCTGA  233
            | ||||| | | ||||||||||||||||| |||||||  || ||| |||||||| || ||
Sbjct  583  TCTTCTCGCCTTGATCCTTTCACGTTAGGTTTTTCCGGCAG-CGAATACTTCCCCGCGGA  641

Query  234  TCCAATGGAGGTCACATATAATTGGGGGGTCTGTGCCAACAATGGTGTTTGGGATCCTTC  293
            |||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct  642  TCCAATGGAGATCACAGATAATTGGGGGGTCTGCGCCAACAGTGGTGTTTGGGATCCTTC  701

Query  294  TTGGCTAGATTTTGATTTTTCATCAACACTATTTACTAATGATTGGACTGTTTCTGGCTA  353
            ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||
Sbjct  702  TTGGCTAGATTTTGATTGTTCCTCAACACTATTTACTGATGATTGGACTGTTTCTGGCTA  761

Query  354  CAAC-CCACTTTTGGGAGCCACTGAtttttttAACGCGAGCACTTTCCAAACG  405
            || | ||||||||| |||||||||||| ||||| |||||||| ||| ||||||
Sbjct  762  CA-CTCCACTTTTGCGAGCCACTGATTCTTTTACCGCGAGCA-TTTACAAACG  812


> Ahg338390 jgi|Araly1|338390|fgenesh1_pg.C_scaffold_2000489
Length=642

 Score =  248 bits (134),  Expect = 3e-65
 Identities = 190/216 (88%), Gaps = 7/216 (3%)
 Strand=Plus/Plus

Query  174  ATT-TTCTC-TCATGGATCCTTTCACGTTAGGGTTTTCCGTAGGC--GATTACTTCCCAG  229
            ||| ||||| || | ||||| ||||| |||||||||||||  | |  ||||| ||||  |
Sbjct  386  ATTCTTCTCTTC-TTGATCCATTCACATTAGGGTTTTCCG--GCCATGATTATTTCCTGG  442

Query  230  CTGATCCAATGGAGGTCACATATAATTGGGGGGTCTGTGCCAACAATGGTGTTTGGGATC  289
            | ||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct  443  CGGATTCAATGGCGGTCACAGATAATTGGGAGGTCTGTGCCAACAATGGTGTTTGGGATC  502

Query  290  CTTCTTGGCTAGATTTTGATTTTTCATCAACACTATTTACTAATGATTGGACTGTTTCTG  349
            ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct  503  CTTCTTGGCTAGATTTTGATTTTTCGTCAACACTCTTTACTGATGATTGGACTGTTTCTG  562

Query  350  GCTACAACCCACTTTTGGGAGCCACTGAtttttttA  385
            ||||||| |||||||||| ||| ||||||| |||||
Sbjct  563  GCTACAATCCACTTTTGGCAGCTACTGATTCTTTTA  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17055548283


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5