BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59722.1 Length=471 Score E Sequences producing significant alignments: (Bits) Value Ahg907515 jgi|Araly1|907515|Al_scaffold_0002_596 418 2e-116 Ahg338390 jgi|Araly1|338390|fgenesh1_pg.C_scaffold_2000489 248 3e-65 > Ahg907515 jgi|Araly1|907515|Al_scaffold_0002_596 Length=846 Score = 418 bits (226), Expect = 2e-116 Identities = 355/413 (86%), Gaps = 25/413 (6%) Strand=Plus/Plus Query 12 CTTGAAGAAGCCCAAGCCGAAAGAAACGGAAGATG-ATGATCATCTTAGGATTTCAGACA 70 ||| |||||||||||||| |||||||||||||| | |||||||||||||| ||||||||| Sbjct 406 CTT-AAGAAGCCCAAGCCAAAAGAAACGGAAGA-GAATGATCATCTTAGGGTTTCAGACA 463 Query 71 ACAACACCACCATCTCAAACCGC-AAGAT-GGTT-T--C-AAC-T-G-----AAGAAACT 117 ||| | ||| ||||||||||||| ||| | |||| | | | | | | |||| | Sbjct 464 ACAGCGCCATCATCTCAAACCGCAAAGTTGGGTTATGCCTTCCGTGGCTCCCACGAAAGT 523 Query 118 GCTTCCAATTGGGGATCTTCTGCTACTTCCAAGGTTTCTAAGGATGTTGC-AG-CCGGAT 175 | |||||||| || ||||||||||||||||||||||||||||||||||| | |||||| Sbjct 524 G-TTCCAATTTGGAATCTTCTGCTACTTCCAAGGTTTCTAAGGATGTTGTTATTCCGGAT 582 Query 176 T-TTCTCTCATGGATCCTTTCACGTTAGGGTTTTCCGT-AGGCGATTACTTCCCAGCTGA 233 | ||||| | | ||||||||||||||||| ||||||| || ||| |||||||| || || Sbjct 583 TCTTCTCGCCTTGATCCTTTCACGTTAGGTTTTTCCGGCAG-CGAATACTTCCCCGCGGA 641 Query 234 TCCAATGGAGGTCACATATAATTGGGGGGTCTGTGCCAACAATGGTGTTTGGGATCCTTC 293 |||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| Sbjct 642 TCCAATGGAGATCACAGATAATTGGGGGGTCTGCGCCAACAGTGGTGTTTGGGATCCTTC 701 Query 294 TTGGCTAGATTTTGATTTTTCATCAACACTATTTACTAATGATTGGACTGTTTCTGGCTA 353 ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| Sbjct 702 TTGGCTAGATTTTGATTGTTCCTCAACACTATTTACTGATGATTGGACTGTTTCTGGCTA 761 Query 354 CAAC-CCACTTTTGGGAGCCACTGAtttttttAACGCGAGCACTTTCCAAACG 405 || | ||||||||| |||||||||||| ||||| |||||||| ||| |||||| Sbjct 762 CA-CTCCACTTTTGCGAGCCACTGATTCTTTTACCGCGAGCA-TTTACAAACG 812 > Ahg338390 jgi|Araly1|338390|fgenesh1_pg.C_scaffold_2000489 Length=642 Score = 248 bits (134), Expect = 3e-65 Identities = 190/216 (88%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 174 ATT-TTCTC-TCATGGATCCTTTCACGTTAGGGTTTTCCGTAGGC--GATTACTTCCCAG 229 ||| ||||| || | ||||| ||||| ||||||||||||| | | ||||| |||| | Sbjct 386 ATTCTTCTCTTC-TTGATCCATTCACATTAGGGTTTTCCG--GCCATGATTATTTCCTGG 442 Query 230 CTGATCCAATGGAGGTCACATATAATTGGGGGGTCTGTGCCAACAATGGTGTTTGGGATC 289 | ||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 443 CGGATTCAATGGCGGTCACAGATAATTGGGAGGTCTGTGCCAACAATGGTGTTTGGGATC 502 Query 290 CTTCTTGGCTAGATTTTGATTTTTCATCAACACTATTTACTAATGATTGGACTGTTTCTG 349 ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| Sbjct 503 CTTCTTGGCTAGATTTTGATTTTTCGTCAACACTCTTTACTGATGATTGGACTGTTTCTG 562 Query 350 GCTACAACCCACTTTTGGGAGCCACTGAtttttttA 385 ||||||| |||||||||| ||| ||||||| ||||| Sbjct 563 GCTACAATCCACTTTTGGCAGCTACTGATTCTTTTA 598 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17055548283 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5