BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59725.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907514 jgi|Araly1|907514|Al_scaffold_0002_595 1552 0.0
Ahg471147 jgi|Araly1|471147|fgenesh2_kg.1__1101__AT1G10350.1 209 3e-53
> Ahg907514 jgi|Araly1|907514|Al_scaffold_0002_595
Length=1005
Score = 1552 bits (840), Expect = 0.0
Identities = 945/995 (95%), Gaps = 10/995 (1%)
Strand=Plus/Plus
Query 1 ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAAGCGCAACGGAAGACGATCTA 60
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1 ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAACCGCAACCGAAGACGATCTA 60
Query 61 AAGAAATCGTATCGAAGACTTGCAATGAAATGGCACCCTGACAAAAACCCTA-CTTCAAT 119
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 61 AAGAAATCGTATCGAAGACTTGCGATGAAATGGCACCCTGACAAAAACCC-AGCTTCAAA 119
Query 120 CAAGCAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGA 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAGAAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGA 179
Query 180 TCCTAACAAACGTCAGATCTATGATCAATATGGTGAAGACGGACTTACGGCGACAGAAGC 239
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 180 TCCTAATAAACGTCAGATCTATGATCAATACGGTGAAGACGGACTTACGGCGACAG-A-- 236
Query 240 AACGGCGTCGTCTCAACAACATAATTACTCTTCTGGTAACAACAATAATTACAATGCAGG 299
||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||| ||
Sbjct 237 AACGGCGTCGTCTCAACAACAGAATCACTCTTCTGGTAACAACAAT-A--ACAATGC-GG 292
Query 300 G-TTTAGGTATTATCCACGTGATGCTGAAGATATTTTCGCTGAGTTTTTCGGTGCATCTG 358
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 293 GATTTAGGTATTATCCACGTGATGCTGAAGATATTTTTGCTGAGTTTTTCGGTGCATCTG 352
Query 359 AGAAAGTCTTTGATGGTGGCGTCGGCGGTGGCGGGAGGTTTAAAAGTGCGGAGGCGGGAA 418
|||||||||||| |||||| | ||||||||||||||| ||||||| ||||||||||||||
Sbjct 353 AGAAAGTCTTTGGTGGTGGTGGCGGCGGTGGCGGGAGATTTAAAACTGCGGAGGCGGGAA 412
Query 419 GTCAGACGAATAGGAAAACTCCGGTGAACAGGAAAGCTCCGGCGATTGAGAGTAAATTGG 478
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 413 GTCAGACGAATAGGAAAACACCGGTGAATAGGAAAGCTCCGGCGATTGAAAGTAAATTGG 472
Query 479 CTTGTACTCTTGAGGAGTTGTATAAAGGTGGGAGGAGGAAGATGAAGATTTCCCGCGTTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 473 CTTGTACTCTTGAGGAGTTGTATAAAGGTGGGAGGAGGAAGATGAAGATTTCCCGAGTTG 532
Query 539 TTCCTGATGGTCTTGGAAAGTCAAAGCCAGTGGAAGAGATCTTGAAGATAGATATAACAC 598
|||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 533 TTCCTGATGGTCTTGGAAAGACAAAACCAGTGGAAGAGATCTTGAAGATAGACATAACAC 592
Query 599 CAGGATGGAAGAAAGGAACTAAGATAACTTTTCCAGAGAAAGGAAACCAAGAACCCGGTG 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAGGATGGAAGAAAGGAACAAAGATAACTTTTCCAGAGAAAGGAAACCAAGAACCCGGTG 652
Query 659 TTACTCCCGCAGATCTCATCTTTGTTATAGATGAGAAACCGCATTCGGTTTACAAAAGAG 718
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 653 TTACTCCCGCGGATCTCATCTTTGTTATCGATGAGAAACCGCATTCGGTTTACAAAAGAG 712
Query 719 ACGGTAACGATCTTATTGTAGACAAGAAAGTTTCGCTTTTGGAGGCTTTAACAGGGATCA 778
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 713 ACGGTAACGATCTGATTGTAGACAAGAAAGTTTCACTGTTGGAGGCTTTAACAGGGATCA 772
Query 779 CTCTTAGCTTAACAACACTAGACGGGAGGAATCTGACTATCCCGGTTTTGGATATCGTTA 838
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 773 CTCTTAGCTTAACAACTTTAGACGGGAGGAATCTGACTATCCCGGTATTGGATATTGTTA 832
Query 839 AACCGGGTCAGGAGATAGTGATTCCTAGTGAAGGAATGCCCATCTCTAAAGAAGGTTCAA 898
||||||| ||||||||||| ||||||| ||||||||||||| | |||||||||| |||||
Sbjct 833 AACCGGGGCAGGAGATAGTAATTCCTAATGAAGGAATGCCCGTTTCTAAAGAAGTTTCAA 892
Query 899 AGAGAGGAGATCTAAGAATCAACTTTGAGATATGTTTCCCCTCGAGGCTAACATCGGAAC 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 893 AGAGAGGAGATCTAAGAATCAACTTTGAGATTTGTTTCCCCTCGAGGCTAACATCAGAAC 952
Query 959 AGAAGACAGATCTCAAGAGAGTTCTTGGTGGTAGC 993
|||||||||||||||||||||||||||||||||||
Sbjct 953 AGAAGACAGATCTCAAGAGAGTTCTTGGTGGTAGC 987
> Ahg471147 jgi|Araly1|471147|fgenesh2_kg.1__1101__AT1G10350.1
Length=1393
Score = 209 bits (113), Expect = 3e-53
Identities = 190/227 (84%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 1 ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAAGCGC-AACGGAAGACGATCT 59
|||||||| |||||||||||||| || || ||||||| || ||| ||| ||||| |||||
Sbjct 181 ATGGGGGTAGATTACTACAATGTGCTAAAAGTGAATCGAAACGCTAAC-GAAGATGATCT 239
Query 60 AAAGAAATCGTATCGAAGACTTGCAATGAAATGGCACCCTGACAAAAACCCTACTTCAAT 119
||||| || || || ||| | || ||||||||||||||||||||||||||||| |
Sbjct 240 GAAGAAGTCTTACCGGAGAATGGCTATGAAATGGCACCCTGACAAAAACCCTACGAC--- 296
Query 120 CAAGCAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGA 179
|||| |||||||||||||||||||||| || ||||| |||||||| || ||||| |||||
Sbjct 297 CAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTATGACGTTTTGAGCGA 356
Query 180 TCCTAACAAACGTCAGATCTATGATCAATATGGTGAAGACGGACTTA 226
|||| | | |||||||||||| ||||| || |||||||| || ||||
Sbjct 357 TCCTCAGAGACGTCAGATCTACGATCAGTACGGTGAAGAAGGTCTTA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5