BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59740.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475340 jgi|Araly1|475340|fgenesh2_kg.2__470__AT1G59740.1 3197 0.0
> Ahg475340 jgi|Araly1|475340|fgenesh2_kg.2__470__AT1G59740.1
Length=2019
Score = 3197 bits (1731), Expect = 0.0
Identities = 1934/2030 (95%), Gaps = 21/2030 (1%)
Strand=Plus/Plus
Query 1 TTGTCCTCAAAGATAGTAAAG--AAGCCAAATAATAACCAatctttcttctatcttctct 58
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1 TTGCCCTCAAAGATAGTAAAGACAAGCCAAATAATAATCAATCTTTCTTCTATCTTCTTT 60
Query 59 ccctcaatatctttctctcactctctgatctcCCTGGCACAACTAAAGTAGAGATATAGA 118
| ||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 61 CTCTCAATATC--TCTCT--CTCTC---TCTCTCTGGCACAACTAAAGTAGAGATATAGA 113
Query 119 GAGAGAGGAACTTTGGATTGTTTGTGTCTTTGTGACAGATGGCAGAGATAAACAAACAAA 178
|||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 114 GAGAGA--AACTTTGGATTTTTTGTGGGTTTGTGAGAGATGGCAGAGATAAACAAACAAA 171
Query 179 GCAACAAATGGGAACAAGAAGAGGTTAGTAATG-AA--AATAATTGGGAATTGGCTGAAG 235
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 172 GCAACAAATGGGAACAAGAAGTGGTTAGTAATGAAATGAATAATTGGGAATTGGCTGAAG 231
Query 236 AAGAAAGTGTTGACTGGAGAGGGAGACCTTCCAACCCTAACAAGCATGGTGGAATGAGAG 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 232 AAGAAAGTGTTGACTGGAGAGGGAGACCTTCCAACCCTAACAAACATGGTGGAATGAGAG 291
Query 296 CTGCTCTCTTTGTTCTTGGACTACAAGCCTTTGAGATAATGGGGATAGCAGCAGTAGGGA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CTGCTCTCTTTGTTCTTGGACTACAAGCCTTTGAGATAATGGGGATAGCAGCAGTAGGGA 351
Query 356 ACAACCTTATAACTTATGTAATAAACGAAATGCATTTCCCTTTGTCTAAAGCGGCCAATA 415
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 352 ACAACCTTATAACTTATGTAATAAACGAAATGCATTTCCCCTTGTCTAAAGCGGCCAATA 411
Query 416 TTGTTACCAACTTTGTCGGTACCATCTTTATCTTTGCCCTTCTCGGCGGCTATCTCTCGG 475
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 412 TTGTTACCAACTTTGTCGGTACCATCTTTATCTTTGCCCTCCTCGGCGGCTACCTCTCGG 471
Query 476 ACGCCTTTCTAGGCAGCTTCTGGACCATTATCATATTCGGCTTCGTCGAGCTTTCTGGTT 535
| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 472 ATGCCTTTTTAGGCAGCTTCTGGACCATCATCATCTTCGGCTTCGTCGAGCTTTCTGGTT 531
Query 536 TCATACTACTATCAGTACAAGCACATTTACCCCAACTAAAGCCACCAAAATGTAACCCAT 595
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 532 TCATACTACTGTCAGTACAAGCACATTTGCCTCAACTAAAGCCACCAAAGTGTAACCCAT 591
Query 596 TGATAGACCAAACATGTGAAGAAGCCAAAGGTTTCAAGGCAATGATCTTCTTCATGGCAC 655
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 592 TGATAGACCAAGCATGTGAAGAAGCCAAAGGTTTAAAGGCAATGATCTTCTTCATGGCAC 651
Query 656 TCTACTTGGTGGCTTTAGGAAGTGGCTGCGTGAAACCAAACATGATAGCTCACGGTGCGG 715
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTTACTTGGTGGCGTTAGGAAGTGGCTGCGTGAAACCAAACATGATAGCTCACGGTGCGG 711
Query 716 ACCAGTTCTCTCAGTCGCATCCTAAACAATCTAAAAGACTGTCATCTTACTTCAATGCTG 775
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 712 ACCAGTTCTCTCAGTCGCATCCTAAACAATCTAAAAGACTCTCATCTTACTTCAATGCCG 771
Query 776 CCTATTTTGCATTCTCAATGGGCGAGCTTATCGCTCTAACTCTCCTTGTTTGGGTTCAAA 835
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CCTATTTCGCATTCTCAATGGGCGAGCTTATCGCTCTAACTCTCCTTGTTTGGGTTCAAA 831
Query 836 CTCATTCGGGCATGGACATTGGATTTGGAGTCTCTGCTGCAGCGATGACTATGGGCATCA 895
|||||||||| |||||| |||| || ||||||||||||||||| |||||||||||| |||
Sbjct 832 CTCATTCGGGAATGGACGTTGGGTTCGGAGTCTCTGCTGCAGCAATGACTATGGGCCTCA 891
Query 896 TTAGCTTAGTCTCCGGTACTATGTATTTTCGTAACAAACGTCCACGTCGAAGCATCTTCA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTAGCTTAGTCTCCGGTACTATGTATTTTCGTAACAAACGTCCACGTCGAAGCATCTTCA 951
Query 956 CTCCCATTGCCCATGTTATTGTGGCTGCCATATTAAAAAGAAAGCTTGCGTCTCCCTCTG 1015
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 952 CTCCCATTGCCCAAGTTGTTGTGGCTGCCATATTAAAAAGAAAGCTTGTGTCTCCCTCTG 1011
Query 1016 ACCCAAGAATGCTCCATGGAGACCACCATGTCGCAAACGACGTCGTACCCTCCTCCACTT 1075
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACCCAAGAATGCTTCATGGAGACCACCATGTCGCAAACGACGTCGTACCCTCCTCCACTT 1071
Query 1076 TACCACACACTCCTCGTTTCAGGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAA 1135
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TACCATACACTCCTCGTTTCAGGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAA 1131
Query 1136 ACACAAAGGAGAGTCCATGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTAAAAACCC 1195
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1132 ACACCAAGGAGAGTCCGTGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTCAAAACCC 1191
Query 1196 TAATCTCACTTGTCCCTATCTTTGCAAGCACCATAGTCTTCAACACCATCTTGGCACAGC 1255
|||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 1192 TAATCTCACTTGTCCCAATCTTCGCAAGCACCATCGTCTTCAACACAATCTTGGCTCAGC 1251
Query 1256 TCCAAACGTTTTCAGTCCAACAAGGAAGTTCCATGAACACTCGTCTCTCAAATTCCTTCC 1315
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1252 TCCAAACGTTTTCGGTCCAACAAGGAAGTTCCATGAACACTCGTCTTTCAAATTCCTTCC 1311
Query 1316 ACATCCCTCCGGCTTCACTCCAGGCCATCCCTTACATAATGCTCATATTCCTTGTCCCTC 1375
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1312 ACATTCCTCCGGCTTCACTCCAGGCCATCCCTTACATGATGCTCATATTCCTCGTCCCTC 1371
Query 1376 TCTACGACTCTTTCTTAGTCCCTTTTGCACGTAAGCTCACAGGACATAACTCAGGTATTC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TCTACGACTCTTTCTTAGTCCCTTTTGCACGTAAGCTCACAGGACATAACTCAGGTATTC 1431
Query 1436 CTCCATTGACTCGGATAGGAATTGGACTCTTCCTCTCCACTTTCTCCATGGTTTCAGCTG 1495
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1432 CTCCATTGACTCGGATAGGAATCGGACTCTTCCTCTCCACTTTCTCCATGGTTTCAGCTG 1491
Query 1496 CCATGCTCGAGAAGAAACGTAGAGACTCTTCGGTTCTTGACGGTAGAATCTTGAGTATCT 1555
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1492 CCATGCTCGAGAAGAAACGTAGAGACTCTTCAGTTCTTGACGGTAGAATCTTGAGTATCT 1551
Query 1556 TCTGGATCACGCCACAGTTCTTGATCTTTGGTATCTCCGAGATGTTTACAGCTGTTGGAT 1615
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1552 TCTGGATCACGCCACAGTTCTTGATCTTTGGGGTCTCCGAGATGTTTACAGCTGTTGGAT 1611
Query 1616 TAATCGAGtttttttACAAGCAATCTGCAAAGGGCATGGAATCATTCTTGATGGCATTGA 1675
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TAATCGAGTTCTTTTACAAGCAATCTGCAAAGGGCATGGAATCATTCTTGATGGCATTGA 1671
Query 1676 CTTATTGTTCCTACTCCTTTGGGTTTTACTTCAGCTCGGTGCTCGTTTCGGTCGTAAACA 1735
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 CATATTGTTCCTACTCCTTTGGGTTTTACTTCAGCTCGGTGCTCGTTTCGGTCGTAAACA 1731
Query 1736 AGATCACTTCCACGTCAGTCGACTCTAAAGGGTGGCTCGGGGAGAACGACCTAAATAAGG 1795
|||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1732 AGATCACTTCGACGTCGGTCGACTCTAAAGGGTGGCTCGGAGAGAACGATCTGAATAAGG 1791
Query 1796 ACAGGCTCGATCTATTTTACTGGCTTTTAGCGGTTCTTAGTCTCTTGAACTTTCTTAGCT 1855
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 ACAGGCTCGATCTGTTTTATTGGCTTTTAGCGGTTCTTAGTCTCTTGAACTTTCTTAGCT 1851
Query 1856 ATCTCTTTTGGTCTCGTTGGAACATTAAGTCTTCGAGACGCAACAACACTAATGTTGTGG 1915
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1852 ATCTCTTTTGGTCTCGTTGGAACATTAAGTCTTCGAGAAGCAACAACACTAACGTGGTGG 1911
Query 1916 GTGATGA-GAACATTTAGCTTGATGCATaaaaaaaTGTACAATACATATAATATCACCTA 1974
| ||| | ||||||||||||||||||||| |||| ||||||||| |||| ||||||||||
Sbjct 1912 GAGAT-ATGAACATTTAGCTTGATGCATATAAAA-TGTACAATAAATATTATATCACCTA 1969
Query 1975 TTAACATGCAT-C-TC-C-AGCATATAATTAATATAAATAAACTGGTGTA 2020
||||||||||| | || | ||||||||||||||||||||||| || ||||
Sbjct 1970 TTAACATGCATGCATCTCCAGCATATAATTAATATAAATAAATTGTTGTA 2019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5